Wall clock time and date at job start Tue Mar 31 2020 04:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99990 * 2 1 4 4 C 1.53004 * 109.47074 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47375 * 64.99669 * 4 3 2 6 6 C 1.42897 * 114.00161 * 180.02562 * 5 4 3 7 7 C 1.53117 * 109.52210 * 210.00026 * 6 5 4 8 8 C 1.53042 * 109.27738 * 182.37054 * 7 6 5 9 9 N 1.46851 * 109.51830 * 59.18214 * 8 7 6 10 10 C 1.46898 * 110.99682 * 174.15734 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99801 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99735 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47527 * 89.99956 * 16 14 12 18 18 H 1.08009 * 119.99486 * 359.97438 * 17 16 14 19 19 C 1.37868 * 120.00223 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46995 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47261 * 119.99939 * 21 19 17 24 24 H 1.48506 * 109.47056 * 239.99773 * 21 19 17 25 25 C 1.46839 * 111.19765 * 298.25422 * 9 8 7 26 26 C 1.53038 * 109.52321 * 61.74421 * 25 9 8 27 27 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47485 * 300.00453 * 1 2 3 29 29 H 1.09008 * 109.47172 * 60.00605 * 1 2 3 30 30 H 1.08997 * 109.47612 * 59.99646 * 3 2 1 31 31 H 1.09005 * 109.47115 * 299.99790 * 3 2 1 32 32 H 1.09003 * 109.46742 * 304.99902 * 4 3 2 33 33 H 1.08999 * 109.47266 * 185.00209 * 4 3 2 34 34 H 1.09006 * 109.52169 * 330.12185 * 6 5 4 35 35 H 1.09006 * 109.50431 * 62.43518 * 7 6 5 36 36 H 1.08995 * 109.53846 * 302.33626 * 7 6 5 37 37 H 1.08992 * 109.46857 * 299.16430 * 8 7 6 38 38 H 1.09007 * 109.45121 * 179.18665 * 8 7 6 39 39 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 40 40 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 41 41 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 42 42 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 43 43 H 1.08999 * 109.46908 * 90.00559 * 15 14 12 44 44 H 1.09000 * 109.47065 * 210.00008 * 15 14 12 45 45 H 1.08990 * 109.47304 * 330.00300 * 15 14 12 46 46 H 1.09004 * 109.46561 * 209.99850 * 16 14 12 47 47 H 1.08998 * 109.47073 * 329.99510 * 16 14 12 48 48 H 0.97000 * 119.99819 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.46389 * 181.75688 * 25 9 8 50 50 H 1.08998 * 109.46466 * 301.72418 * 25 9 8 51 51 H 1.09001 * 109.50415 * 180.87699 * 26 25 9 52 52 H 1.09005 * 109.50244 * 60.76180 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2219 6 6 5.3811 0.4190 -1.3245 7 6 5.7996 0.4968 -2.7953 8 6 7.3085 0.2653 -2.9042 9 7 7.6440 -1.0527 -2.3502 10 6 9.0629 -1.3675 -2.5630 11 6 9.4330 -2.6191 -1.7644 12 6 10.8889 -2.9417 -1.9821 13 8 11.5639 -2.2400 -2.7053 14 7 11.4405 -4.0106 -1.3741 15 6 10.6250 -4.8584 -0.5011 16 6 12.8557 -4.3244 -1.5863 17 6 13.6880 -3.6199 -0.5462 18 1 13.2106 -3.0000 0.1983 19 6 15.0589 -3.7668 -0.5449 20 7 15.6402 -4.5222 -1.4511 21 14 16.0906 -2.8929 0.7440 22 1 15.2030 -2.1105 1.6414 23 1 16.8410 -3.8963 1.5411 24 1 17.0481 -1.9767 0.0738 25 6 7.2944 -1.1348 -0.9264 26 6 5.7852 -0.9450 -0.7585 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5681 0.8410 33 1 3.9786 2.1764 0.0890 34 1 5.8789 1.2089 -0.7619 35 1 5.5530 1.4815 -3.1923 36 1 5.2721 -0.2679 -3.3653 37 1 7.8359 1.0387 -2.3460 38 1 7.6074 0.3057 -3.9517 39 1 9.6750 -0.5296 -2.2294 40 1 9.2402 -1.5475 -3.6233 41 1 9.2558 -2.4391 -0.7040 42 1 8.8210 -3.4570 -2.0980 43 1 10.1718 -5.6562 -1.0896 44 1 11.2548 -5.2926 0.2753 45 1 9.8416 -4.2575 -0.0396 46 1 13.0054 -5.4010 -1.5034 47 1 13.1568 -3.9912 -2.5795 48 1 16.6046 -4.6257 -1.4499 49 1 7.5832 -2.1112 -0.5372 50 1 7.8219 -0.3548 -0.3773 51 1 5.5282 -0.9905 0.2998 52 1 5.2573 -1.7329 -1.2959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092797176.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:31 Heat of formation + Delta-G solvation = -149.945637 kcal Electronic energy + Delta-G solvation = -28327.073563 eV Core-core repulsion = 24325.835314 eV Total energy + Delta-G solvation = -4001.238249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.94840 -40.24999 -39.03002 -37.94586 -36.59984 -34.82075 -34.38112 -32.03135 -31.52857 -30.53723 -29.35312 -27.31203 -27.12957 -25.94248 -24.66759 -24.20915 -23.28496 -22.45717 -20.81750 -19.85809 -18.71392 -18.28238 -17.88167 -17.60825 -17.12248 -16.88841 -16.68333 -16.33588 -16.20903 -15.99000 -15.83371 -15.68135 -15.25740 -14.81682 -14.65856 -14.34425 -14.05087 -13.99575 -13.79047 -13.53715 -13.45074 -13.20914 -13.12734 -13.07273 -12.81475 -12.69867 -12.58225 -12.43900 -12.30186 -12.22339 -12.19295 -12.06890 -11.76656 -11.69366 -11.60340 -11.41025 -10.66069 -10.62602 -10.60141 -10.34613 -9.41997 -9.31958 -8.23362 -6.38519 1.35208 1.37624 1.49399 1.84261 2.27902 2.41627 2.64913 2.88995 2.94519 3.05989 3.74451 3.76300 3.89262 3.98215 4.04111 4.09754 4.18891 4.23391 4.28304 4.35903 4.39385 4.41316 4.45435 4.53482 4.56648 4.58850 4.60426 4.63636 4.73501 4.75514 4.83975 4.88372 4.90805 4.91483 4.93554 4.96957 5.01684 5.03344 5.11197 5.22974 5.23587 5.33686 5.55716 5.83923 6.01437 6.05342 6.12067 6.21831 6.36120 6.69022 6.79493 7.27348 7.48523 8.83846 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.001887 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.941105 B =14837.506337 C =14992.070669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.060 3.940 4 C 0.056 3.944 5 O -0.392 6.392 6 C 0.089 3.911 7 C -0.104 4.104 8 C 0.057 3.943 9 N -0.540 5.540 10 C 0.082 3.918 11 C -0.123 4.123 12 C 0.494 3.506 13 O -0.601 6.601 14 N -0.611 5.611 15 C 0.078 3.922 16 C 0.257 3.743 17 C -0.542 4.542 18 H 0.053 0.947 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.969 3.031 22 H -0.266 1.266 23 H -0.268 1.268 24 H -0.282 1.282 25 C 0.046 3.954 26 C -0.128 4.128 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.121 0.879 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.095 0.905 46 H 0.023 0.977 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.095 0.905 50 H 0.034 0.966 51 H 0.076 0.924 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.783 10.822 5.496 33.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.016 4.016 4 C -0.021 4.021 5 O -0.312 6.312 6 C 0.031 3.969 7 C -0.142 4.142 8 C -0.070 4.070 9 N -0.265 5.265 10 C -0.047 4.047 11 C -0.162 4.162 12 C 0.283 3.717 13 O -0.483 6.483 14 N -0.342 5.342 15 C -0.064 4.064 16 C 0.136 3.864 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.794 3.206 22 H -0.191 1.191 23 H -0.193 1.193 24 H -0.208 1.208 25 C -0.082 4.082 26 C -0.166 4.166 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.139 0.861 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.113 0.887 46 H 0.041 0.959 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.113 0.887 50 H 0.052 0.948 51 H 0.095 0.905 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.575 10.513 4.690 32.670 hybrid contribution 1.600 1.026 0.845 2.080 sum -28.974 11.539 5.535 31.675 Atomic orbital electron populations 1.22895 0.79721 1.03593 1.00807 1.87925 1.21263 1.28679 1.95589 1.22706 0.92043 0.84998 1.01901 1.22752 0.93849 0.98154 0.87297 1.87960 1.22306 1.82244 1.38697 1.22185 0.81063 0.96606 0.97023 1.21561 0.94292 1.02997 0.95343 1.22084 0.95599 0.88633 1.00718 1.62063 1.17670 1.29976 1.16760 1.21627 0.87177 0.95508 1.00352 1.21754 0.90487 1.00702 1.03307 1.21350 0.90902 0.79975 0.79436 1.90633 1.65749 1.50878 1.41002 1.48199 1.11581 1.27843 1.46613 1.21939 0.95344 0.95037 0.94063 1.18763 0.77158 0.95079 0.95444 1.21738 0.92490 1.29650 1.14218 0.92829 1.25890 0.99106 0.96025 0.98313 1.70065 1.10869 1.39885 1.36010 0.85345 0.78290 0.78418 0.78596 1.19069 1.19339 1.20784 1.22285 0.95647 1.02392 0.87866 1.21995 0.94900 0.98164 1.01570 0.89142 0.92703 0.93516 0.89623 0.92377 0.92556 0.89952 0.91666 0.89854 0.91140 0.94553 0.89966 0.95805 0.91226 0.86841 0.86106 0.91117 0.91610 0.88680 0.95872 0.98490 0.92400 0.88719 0.94756 0.90502 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.33 10.67 -144.34 -1.54 -8.87 16 3 C 0.06 0.75 6.32 71.98 0.45 1.20 16 4 C 0.06 0.76 6.13 71.98 0.44 1.20 16 5 O -0.39 -7.56 9.96 -144.34 -1.44 -9.00 16 6 C 0.09 1.53 2.67 30.67 0.08 1.62 16 7 C -0.10 -1.84 5.75 30.65 0.18 -1.66 16 8 C 0.06 1.15 5.42 86.33 0.47 1.61 16 9 N -0.54 -12.13 4.81 -896.35 -4.31 -16.43 16 10 C 0.08 2.29 4.56 86.31 0.39 2.69 16 11 C -0.12 -3.40 3.50 29.85 0.10 -3.29 16 12 C 0.49 20.66 7.67 87.66 0.67 21.34 16 13 O -0.60 -31.56 15.56 -3.04 -0.05 -31.61 16 14 N -0.61 -26.18 2.86 -851.15 -2.43 -28.61 16 15 C 0.08 2.31 10.24 127.77 1.31 3.62 16 16 C 0.26 14.15 5.16 85.63 0.44 14.59 16 17 C -0.54 -31.70 9.38 25.60 0.24 -31.46 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.01 0.32 5.46 84.65 0.46 0.78 16 20 N -0.93 -56.81 13.29 21.44 0.28 -56.53 16 21 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 C 0.05 0.87 4.85 86.33 0.42 1.29 16 26 C -0.13 -2.26 5.72 30.64 0.18 -2.08 16 27 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.77 7.96 -2.39 -0.02 0.75 16 33 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.07 0.99 7.79 -2.38 -0.02 0.97 16 35 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.08 1.63 8.12 -2.38 -0.02 1.61 16 39 H 0.02 0.76 8.04 -2.39 -0.02 0.74 16 40 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 41 H 0.11 2.60 5.47 -2.39 -0.01 2.59 16 42 H 0.12 2.78 8.11 -2.39 -0.02 2.76 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 45 H 0.09 2.07 6.44 -2.39 -0.02 2.05 16 46 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 47 H 0.00 -0.19 7.42 -2.39 -0.02 -0.21 16 48 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 49 H 0.09 1.63 5.81 -2.39 -0.01 1.61 16 50 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.08 1.19 7.96 -2.39 -0.02 1.17 16 52 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -78.31 412.99 0.50 -77.81 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.86 Total: 13.00 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.09 Total: 12.96 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -6.45 Total: -101.57 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -3.02 Total: -49.48 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -78.31 0.50 -77.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092797176.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.135 kcal (2) G-P(sol) polarization free energy of solvation -78.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds