Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99621 * 2 1 4 4 O 1.20819 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99700 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47152 * 180.02562 * 5 3 2 7 7 C 1.36934 * 119.99550 * 276.47605 * 6 5 3 8 8 H 1.08003 * 119.99860 * 146.26205 * 7 6 5 9 9 C 1.38817 * 120.00290 * 326.25622 * 7 6 5 10 10 N 1.31620 * 119.99838 * 153.22748 * 9 7 6 11 11 Si 1.86793 * 119.99709 * 333.22617 * 9 7 6 12 12 H 1.48492 * 109.47192 * 95.38789 * 11 9 7 13 13 H 1.48502 * 109.46974 * 215.38296 * 11 9 7 14 14 H 1.48499 * 109.47485 * 335.38227 * 11 9 7 15 15 S 1.65598 * 119.99977 * 96.47356 * 6 5 3 16 16 O 1.42099 * 106.40147 * 336.46036 * 15 6 5 17 17 O 1.42100 * 106.39795 * 203.54254 * 15 6 5 18 18 C 1.76196 * 107.21665 * 90.00569 * 15 6 5 19 19 C 1.38167 * 120.02975 * 115.00149 * 18 15 6 20 20 C 1.38247 * 120.05465 * 180.02562 * 19 18 15 21 21 C 1.38286 * 120.11168 * 359.95467 * 20 19 18 22 22 C 1.38122 * 120.05663 * 0.02562 * 21 20 19 23 23 C 1.38716 * 120.02400 * 295.01327 * 18 15 6 24 24 O 1.35894 * 120.05619 * 359.96338 * 23 18 15 25 25 C 1.42906 * 116.99857 * 179.97438 * 24 23 18 26 26 H 1.08998 * 109.47577 * 59.99637 * 1 2 3 27 27 H 1.09007 * 109.47043 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47127 * 299.99475 * 1 2 3 29 29 H 1.09002 * 109.46903 * 60.00627 * 5 3 2 30 30 H 1.08997 * 109.47302 * 300.00235 * 5 3 2 31 31 H 0.97003 * 119.99580 * 180.02562 * 10 9 7 32 32 H 1.07998 * 119.97102 * 0.02562 * 19 18 15 33 33 H 1.07992 * 119.94409 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.97323 * 179.75196 * 21 20 19 35 35 H 1.08003 * 120.02845 * 179.97438 * 22 21 20 36 36 H 1.08996 * 109.47177 * 59.99906 * 25 24 23 37 37 H 1.09002 * 109.47096 * 180.02562 * 25 24 23 38 38 H 1.09001 * 109.46981 * 299.99709 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.0469 3.3751 -1.1778 8 1 3.8109 4.4288 -1.1967 9 6 4.4166 2.7255 -2.3476 10 7 3.9991 3.1771 -3.5112 11 14 5.5065 1.2105 -2.2701 12 1 4.6603 -0.0096 -2.2888 13 1 6.4197 1.1973 -3.4410 14 1 6.3061 1.2392 -1.0191 15 16 4.3720 3.4271 1.4255 16 8 3.7088 2.7033 2.4528 17 8 4.1868 4.8198 1.2121 18 6 6.0986 3.1886 1.6835 19 6 6.9547 4.2731 1.6793 20 6 8.3095 4.0864 1.8812 21 6 8.8113 2.8146 2.0887 22 6 7.9596 1.7273 2.0942 23 6 6.5995 1.9117 1.8908 24 8 5.7594 0.8436 1.8959 25 6 6.3452 -0.4414 2.1148 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.9556 0.7811 -0.8909 30 1 3.9563 0.7806 0.8891 31 1 4.2571 2.7230 -4.3286 32 1 6.5651 5.2674 1.5182 33 1 8.9771 4.9353 1.8771 34 1 9.8706 2.6710 2.2422 35 1 8.3521 0.7342 2.2560 36 1 6.8410 -0.4541 3.0854 37 1 5.5666 -1.2039 2.0941 38 1 7.0748 -0.6463 1.3314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095400390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -136.730706 kcal Electronic energy + Delta-G solvation = -28036.807866 eV Core-core repulsion = 23973.677585 eV Total energy + Delta-G solvation = -4063.130281 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96716 -39.73511 -37.27997 -36.39948 -35.90571 -35.15096 -34.58157 -32.16805 -31.05942 -29.94763 -28.62487 -27.24690 -26.45175 -24.19190 -22.86780 -21.97363 -20.82597 -18.71961 -18.19870 -17.48321 -17.18221 -17.01697 -16.26547 -16.02644 -15.86845 -15.70139 -15.35695 -15.28886 -14.58523 -14.13162 -14.13031 -13.61876 -13.19092 -13.14742 -12.89553 -12.77642 -12.54517 -12.16284 -12.04677 -11.70617 -11.55066 -11.26081 -11.24302 -11.07680 -11.00026 -10.85602 -10.80833 -10.42710 -10.25518 -10.20918 -9.91738 -9.85079 -9.14455 -9.02679 -8.34517 -8.13078 -6.70947 -4.12219 1.16762 1.54586 1.61237 2.88606 2.93262 3.09636 3.12359 3.25897 3.33311 3.75291 3.92856 4.13500 4.65589 4.84005 4.91319 4.93534 5.12703 5.16373 5.28194 5.39049 5.42721 5.48419 5.50778 5.53317 5.67405 5.70606 5.82910 5.86666 5.91180 6.00785 6.33592 6.42400 6.58436 6.65668 6.91506 6.96824 7.38474 7.40173 8.20354 8.49575 8.82789 8.85533 10.36358 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.006783 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.675636 B = 4126.886682 C = 4415.404824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.479 6.479 5 C 0.128 3.872 6 N -0.814 5.814 7 C -0.259 4.259 8 H 0.128 0.872 9 C 0.067 3.933 10 N -0.819 5.819 11 Si 0.854 3.146 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.250 1.250 15 S 2.580 3.420 16 O -0.985 6.985 17 O -0.966 6.966 18 C -0.690 4.690 19 C 0.010 3.990 20 C -0.182 4.182 21 C -0.048 4.048 22 C -0.232 4.232 23 C 0.215 3.785 24 O -0.311 6.311 25 C 0.023 3.977 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.281 0.719 32 H 0.145 0.855 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -9.151 6.634 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.288 6.288 3 C 0.288 3.712 4 O -0.362 6.362 5 C 0.000 4.000 6 N -0.638 5.638 7 C -0.404 4.404 8 H 0.145 0.855 9 C -0.148 4.148 10 N -0.455 5.455 11 Si 0.679 3.321 12 H -0.191 1.191 13 H -0.206 1.206 14 H -0.174 1.174 15 S 2.679 3.321 16 O -0.975 6.975 17 O -0.956 6.956 18 C -0.769 4.769 19 C -0.009 4.009 20 C -0.201 4.201 21 C -0.066 4.066 22 C -0.252 4.252 23 C 0.168 3.832 24 O -0.224 6.224 25 C -0.072 4.072 26 H 0.079 0.921 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.091 0.909 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.620 -8.383 7.257 12.431 hybrid contribution 1.522 -1.165 -0.341 1.947 sum 7.143 -9.548 6.916 13.784 Atomic orbital electron populations 1.23145 0.77497 1.02761 1.02446 1.86484 1.22686 1.34457 1.85134 1.24506 0.92637 0.81309 0.72748 1.90632 1.66343 1.36107 1.43145 1.20983 0.87384 0.86266 1.05406 1.53370 1.69014 1.18002 1.23427 1.19286 1.41340 0.97908 0.81909 0.85510 1.25675 0.95703 0.98362 0.95054 1.69889 1.37306 1.39914 0.98349 0.87288 0.82219 0.82836 0.79708 1.19108 1.20574 1.17362 1.08880 0.74291 0.74682 0.74213 1.93399 1.73234 1.73189 1.57643 1.93397 1.85148 1.31608 1.85417 1.31344 1.31763 0.95765 1.18057 1.20860 0.92610 0.97919 0.89467 1.21156 0.95736 0.97252 1.05932 1.21041 0.98992 0.92416 0.94178 1.21214 0.92713 1.00099 1.11130 1.18331 0.88834 0.86162 0.89922 1.86092 1.35569 1.14779 1.85949 1.23153 1.00571 0.82499 1.00943 0.92097 0.88795 0.92192 0.88628 0.85854 0.90867 0.83749 0.85574 0.85812 0.85352 0.92297 0.87595 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.94 10.57 -39.26 -0.41 -7.35 16 3 C 0.45 10.13 7.98 36.01 0.29 10.42 16 4 O -0.48 -12.22 16.04 -18.74 -0.30 -12.52 16 5 C 0.13 2.83 4.76 -5.19 -0.02 2.81 16 6 N -0.81 -20.03 2.07 -61.08 -0.13 -20.15 16 7 C -0.26 -6.89 9.38 -15.06 -0.14 -7.03 16 8 H 0.13 3.68 7.54 -52.48 -0.40 3.28 16 9 C 0.07 1.71 5.27 -17.43 -0.09 1.62 16 10 N -0.82 -21.80 13.97 55.49 0.78 -21.02 16 11 Si 0.85 18.47 25.19 -169.99 -4.28 14.19 16 12 H -0.26 -5.34 6.62 56.52 0.37 -4.97 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.25 -5.20 7.11 56.52 0.40 -4.80 16 15 S 2.58 62.63 5.20 -107.50 -0.56 62.07 16 16 O -0.98 -24.80 16.24 -62.48 -1.01 -25.81 16 17 O -0.97 -25.49 15.86 -57.17 -0.91 -26.40 16 18 C -0.69 -14.37 5.92 -39.43 -0.23 -14.61 16 19 C 0.01 0.19 9.55 -39.60 -0.38 -0.19 16 20 C -0.18 -2.74 10.04 -39.56 -0.40 -3.14 16 21 C -0.05 -0.66 10.04 -39.61 -0.40 -1.06 16 22 C -0.23 -3.50 9.04 -39.43 -0.36 -3.85 16 23 C 0.21 3.99 6.63 -39.21 -0.26 3.73 16 24 O -0.31 -5.45 6.50 -29.11 -0.19 -5.64 16 25 C 0.02 0.27 9.81 101.05 0.99 1.26 16 26 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16 29 H 0.10 2.04 2.88 -51.93 -0.15 1.89 16 30 H 0.12 2.45 4.87 -51.93 -0.25 2.19 16 31 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.14 2.58 7.33 -52.49 -0.38 2.20 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 36 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -34.00 332.67 -5.95 -39.95 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -4.01 Total: 6.13 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.06 Total: -8.45 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.65 Total: -41.18 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -2.83 Total: -77.72 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.28 Total: 14.19 kcal Atomic # 16 Polarization: 62.63 SS G_CDS: -0.56 Total: 62.07 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.00 -5.95 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095400390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.785 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds