Wall clock time and date at job start Tue Mar 31 2020 05:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99621 * 2 1 4 4 O 1.20819 * 120.00080 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99700 * 180.02562 * 3 2 1 6 6 N 1.46506 * 109.47152 * 180.02562 * 5 3 2 7 7 C 1.36934 * 119.99550 * 276.47605 * 6 5 3 8 8 H 1.08003 * 119.99860 * 146.26205 * 7 6 5 9 9 C 1.38817 * 120.00290 * 326.25622 * 7 6 5 10 10 N 1.31620 * 119.99838 * 153.22748 * 9 7 6 11 11 Si 1.86793 * 119.99709 * 333.22617 * 9 7 6 12 12 H 1.48492 * 109.47192 * 95.38789 * 11 9 7 13 13 H 1.48502 * 109.46974 * 215.38296 * 11 9 7 14 14 H 1.48499 * 109.47485 * 335.38227 * 11 9 7 15 15 S 1.65598 * 119.99977 * 96.47356 * 6 5 3 16 16 O 1.42099 * 106.40147 * 336.46036 * 15 6 5 17 17 O 1.42100 * 106.39795 * 203.54254 * 15 6 5 18 18 C 1.76196 * 107.21665 * 90.00569 * 15 6 5 19 19 C 1.38167 * 120.02975 * 115.00149 * 18 15 6 20 20 C 1.38247 * 120.05465 * 180.02562 * 19 18 15 21 21 C 1.38286 * 120.11168 * 359.95467 * 20 19 18 22 22 C 1.38122 * 120.05663 * 0.02562 * 21 20 19 23 23 C 1.38716 * 120.02400 * 295.01327 * 18 15 6 24 24 O 1.35894 * 120.05619 * 359.96338 * 23 18 15 25 25 C 1.42906 * 116.99857 * 179.97438 * 24 23 18 26 26 H 1.08998 * 109.47577 * 59.99637 * 1 2 3 27 27 H 1.09007 * 109.47043 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47127 * 299.99475 * 1 2 3 29 29 H 1.09002 * 109.46903 * 60.00627 * 5 3 2 30 30 H 1.08997 * 109.47302 * 300.00235 * 5 3 2 31 31 H 0.97003 * 119.99580 * 180.02562 * 10 9 7 32 32 H 1.07998 * 119.97102 * 0.02562 * 19 18 15 33 33 H 1.07992 * 119.94409 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.97323 * 179.75196 * 21 20 19 35 35 H 1.08003 * 120.02845 * 179.97438 * 22 21 20 36 36 H 1.08996 * 109.47177 * 59.99906 * 25 24 23 37 37 H 1.09002 * 109.47096 * 180.02562 * 25 24 23 38 38 H 1.09001 * 109.46981 * 299.99709 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.0469 3.3751 -1.1778 8 1 3.8109 4.4288 -1.1967 9 6 4.4166 2.7255 -2.3476 10 7 3.9991 3.1771 -3.5112 11 14 5.5065 1.2105 -2.2701 12 1 4.6603 -0.0096 -2.2888 13 1 6.4197 1.1973 -3.4410 14 1 6.3061 1.2392 -1.0191 15 16 4.3720 3.4271 1.4255 16 8 3.7088 2.7033 2.4528 17 8 4.1868 4.8198 1.2121 18 6 6.0986 3.1886 1.6835 19 6 6.9547 4.2731 1.6793 20 6 8.3095 4.0864 1.8812 21 6 8.8113 2.8146 2.0887 22 6 7.9596 1.7273 2.0942 23 6 6.5995 1.9117 1.8908 24 8 5.7594 0.8436 1.8959 25 6 6.3452 -0.4414 2.1148 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.9556 0.7811 -0.8909 30 1 3.9563 0.7806 0.8891 31 1 4.2571 2.7230 -4.3286 32 1 6.5651 5.2674 1.5182 33 1 8.9771 4.9353 1.8771 34 1 9.8706 2.6710 2.2422 35 1 8.3521 0.7342 2.2560 36 1 6.8410 -0.4541 3.0854 37 1 5.5666 -1.2039 2.0941 38 1 7.0748 -0.6463 1.3314 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095400390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:39 Heat of formation + Delta-G solvation = -162.557041 kcal Electronic energy + Delta-G solvation = -28037.927780 eV Core-core repulsion = 23973.677585 eV Total energy + Delta-G solvation = -4064.250195 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45403 -41.16703 -38.57158 -38.08003 -37.89891 -36.95266 -36.66021 -34.04567 -32.34627 -31.15655 -30.26440 -28.19441 -27.91416 -26.08705 -24.22305 -23.18436 -22.51958 -20.43382 -19.74407 -19.30246 -18.85919 -18.68415 -17.84063 -17.51819 -17.40380 -17.21582 -16.93613 -16.66069 -16.00746 -15.79049 -15.36990 -15.04756 -14.84471 -14.65990 -14.63519 -14.36230 -13.82661 -13.69117 -13.32821 -13.10656 -13.03450 -12.95138 -12.92816 -12.74600 -12.68512 -12.46226 -12.28191 -12.08560 -11.88287 -11.76951 -11.72790 -11.43830 -10.94101 -10.37453 -10.19267 -9.38096 -8.57612 -6.13229 -0.41634 -0.04427 0.37361 1.17589 1.19077 1.34698 1.46799 1.70804 2.11365 2.18818 2.25099 2.57927 2.78721 3.03323 3.46431 3.83064 3.86976 3.94296 4.00312 4.13809 4.20535 4.33834 4.35859 4.36395 4.42056 4.43190 4.61762 4.66805 4.76023 4.79463 4.85878 5.09857 5.23903 5.33167 5.38574 5.54919 5.73967 6.14864 6.24118 6.77987 6.88828 6.96751 8.56040 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.006783 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.675636 B = 4126.886682 C = 4415.404824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.362 6.362 3 C 0.445 3.555 4 O -0.523 6.523 5 C 0.120 3.880 6 N -0.832 5.832 7 C -0.301 4.301 8 H 0.072 0.928 9 C 0.027 3.973 10 N -0.879 5.879 11 Si 0.909 3.091 12 H -0.239 1.239 13 H -0.276 1.276 14 H -0.233 1.233 15 S 2.624 3.376 16 O -0.998 6.998 17 O -1.002 7.002 18 C -0.723 4.723 19 C -0.014 4.014 20 C -0.178 4.178 21 C -0.028 4.028 22 C -0.227 4.227 23 C 0.204 3.796 24 O -0.340 6.340 25 C 0.005 3.995 26 H 0.054 0.946 27 H 0.145 0.855 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.148 0.852 31 H 0.285 0.715 32 H 0.132 0.868 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.310 -12.821 8.769 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.285 3.715 4 O -0.411 6.411 5 C -0.008 4.008 6 N -0.658 5.658 7 C -0.440 4.440 8 H 0.089 0.911 9 C -0.182 4.182 10 N -0.515 5.515 11 Si 0.731 3.269 12 H -0.164 1.164 13 H -0.202 1.202 14 H -0.155 1.155 15 S 2.727 3.273 16 O -0.988 6.988 17 O -0.993 6.993 18 C -0.811 4.811 19 C -0.034 4.034 20 C -0.196 4.196 21 C -0.046 4.046 22 C -0.246 4.246 23 C 0.156 3.844 24 O -0.254 6.254 25 C -0.088 4.088 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.077 0.923 29 H 0.124 0.876 30 H 0.165 0.835 31 H 0.095 0.905 32 H 0.150 0.850 33 H 0.179 0.821 34 H 0.194 0.806 35 H 0.189 0.811 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.292 -12.084 9.274 17.843 hybrid contribution 0.432 -0.055 -0.631 0.767 sum 9.724 -12.139 8.643 17.794 Atomic orbital electron populations 1.23583 0.75066 1.05986 1.02161 1.86462 1.24987 1.32148 1.84204 1.24811 0.93229 0.81708 0.71710 1.90613 1.67298 1.37753 1.45402 1.21324 0.87194 0.85390 1.06877 1.52865 1.72046 1.18778 1.22105 1.18616 1.45481 0.95981 0.83952 0.91065 1.26220 0.96198 1.01893 0.93886 1.69994 1.39445 1.42868 0.99230 0.86400 0.80600 0.79581 0.80352 1.16442 1.20159 1.15525 1.05442 0.75495 0.73289 0.73104 1.93395 1.74695 1.73388 1.57300 1.93373 1.86569 1.33442 1.85898 1.30427 1.28120 0.98645 1.23885 1.20987 0.94592 0.96921 0.90854 1.21563 0.94141 0.99634 1.04311 1.21725 1.01432 0.91051 0.90352 1.21735 0.90905 1.02712 1.09257 1.18540 0.90623 0.85447 0.89807 1.86028 1.37054 1.16446 1.85844 1.23649 1.02112 0.80123 1.02913 0.92743 0.83719 0.92306 0.87566 0.83508 0.90518 0.84978 0.82081 0.80583 0.81075 0.90003 0.85596 0.90510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -13.27 10.57 -51.43 -0.54 -13.81 16 3 C 0.44 20.50 7.98 71.24 0.57 21.07 16 4 O -0.52 -28.18 16.04 21.99 0.35 -27.82 16 5 C 0.12 5.32 4.76 85.63 0.41 5.73 16 6 N -0.83 -42.65 2.07 -347.16 -0.72 -43.37 16 7 C -0.30 -17.31 9.38 84.04 0.79 -16.53 16 8 H 0.07 4.68 7.54 -2.91 -0.02 4.66 16 9 C 0.03 1.47 5.27 84.86 0.45 1.92 16 10 N -0.88 -50.14 13.97 21.65 0.30 -49.84 16 11 Si 0.91 37.89 25.19 68.60 1.73 39.62 16 12 H -0.24 -8.88 6.62 99.48 0.66 -8.22 16 13 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 14 H -0.23 -8.94 7.11 99.48 0.71 -8.23 16 15 S 2.62 132.05 5.20 -56.49 -0.29 131.75 16 16 O -1.00 -51.09 16.24 -122.92 -2.00 -53.09 16 17 O -1.00 -56.69 15.86 -128.00 -2.03 -58.72 16 18 C -0.72 -29.58 5.92 22.37 0.13 -29.45 16 19 C -0.01 -0.51 9.55 22.26 0.21 -0.30 16 20 C -0.18 -4.61 10.04 22.28 0.22 -4.38 16 21 C -0.03 -0.59 10.04 22.25 0.22 -0.36 16 22 C -0.23 -5.48 9.04 22.37 0.20 -5.27 16 23 C 0.20 6.89 6.63 22.51 0.15 7.04 16 24 O -0.34 -10.79 6.50 -83.08 -0.54 -11.33 16 25 C 0.01 0.09 9.81 113.37 1.11 1.21 16 26 H 0.05 1.61 8.13 -2.39 -0.02 1.59 16 27 H 0.14 2.59 8.14 -2.38 -0.02 2.57 16 28 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 29 H 0.11 4.45 2.88 -2.39 -0.01 4.44 16 30 H 0.15 5.67 4.87 -2.39 -0.01 5.66 16 31 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.13 4.91 7.33 -2.91 -0.02 4.89 16 33 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.18 1.98 8.06 -2.91 -0.02 1.95 16 35 H 0.17 2.62 6.30 -2.91 -0.02 2.61 16 36 H 0.08 1.10 7.66 -2.39 -0.02 1.08 16 37 H 0.13 1.73 8.14 -2.39 -0.02 1.72 16 38 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 Total: -1.00 -83.11 332.67 2.99 -80.13 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 1.06 Total: 23.90 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 5.66 Total: -17.42 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -0.42 Total: -93.21 kcal Atomic # 8 Polarization: -160.01 SS G_CDS: -4.76 Total: -164.77 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 1.73 Total: 39.62 kcal Atomic # 16 Polarization: 132.05 SS G_CDS: -0.29 Total: 131.75 kcal Total: -83.11 2.99 -80.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095400390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.431 kcal (2) G-P(sol) polarization free energy of solvation -83.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds