Wall clock time and date at job start Tue Mar 31 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47245 * 270.00403 * 3 2 1 5 5 H 1.48500 * 109.47195 * 30.00339 * 3 2 1 6 6 H 1.48496 * 109.47317 * 150.00242 * 3 2 1 7 7 C 1.38798 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00582 * 179.97438 * 7 2 1 9 9 O 1.34858 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.34751 * 117.00468 * 180.02562 * 9 7 2 11 11 O 1.21529 * 119.99393 * 0.02562 * 10 9 7 12 12 C 1.47532 * 120.00534 * 179.97438 * 10 9 7 13 13 C 1.39760 * 120.12661 * 0.02562 * 12 10 9 14 14 C 1.37792 * 119.87403 * 179.97438 * 13 12 10 15 15 C 1.38691 * 120.12399 * 0.02562 * 14 13 12 16 16 F 1.35106 * 119.87047 * 179.97438 * 15 14 13 17 17 C 1.38649 * 120.26380 * 359.97438 * 15 14 13 18 18 S 1.76198 * 119.94367 * 179.97438 * 17 15 14 19 19 O 1.42102 * 106.40124 * 181.46158 * 18 17 15 20 20 O 1.42100 * 106.39768 * 48.54157 * 18 17 15 21 21 N 1.65597 * 107.21910 * 295.00379 * 18 17 15 22 22 C 1.47577 * 134.49122 * 89.99689 * 21 18 17 23 23 C 1.53947 * 86.11672 * 204.64013 * 22 21 18 24 24 C 1.47577 * 134.49092 * 269.99619 * 21 18 17 25 25 C 1.37838 * 120.11932 * 0.27221 * 17 15 14 26 26 H 0.97004 * 120.00174 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.06125 * 359.96988 * 13 12 10 28 28 H 1.08000 * 119.93692 * 180.02562 * 14 13 12 29 29 H 1.08999 * 113.76881 * 90.34058 * 22 21 18 30 30 H 1.08997 * 113.77366 * 318.93833 * 22 21 18 31 31 H 1.09004 * 113.74083 * 90.73886 * 23 22 21 32 32 H 1.08999 * 113.74208 * 222.05046 * 23 22 21 33 33 H 1.09003 * 113.76710 * 41.06241 * 24 21 18 34 34 H 1.08991 * 113.77259 * 269.65855 * 24 21 18 35 35 H 1.08001 * 120.06162 * 179.71924 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0082 -1.2020 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3340 -2.3699 -0.0005 10 6 2.0679 -3.5001 -0.0005 11 8 3.2815 -3.4364 -0.0001 12 6 1.3982 -4.8146 0.0000 13 6 0.0027 -4.8909 0.0000 14 6 -0.6174 -6.1215 0.0000 15 6 0.1407 -7.2829 0.0006 16 9 -0.4727 -8.4867 0.0011 17 6 1.5254 -7.2135 0.0006 18 16 2.4802 -8.6943 0.0019 19 8 3.8430 -8.2931 0.0364 20 8 1.9391 -9.5215 -1.0190 21 7 2.1839 -9.4674 1.4361 22 6 1.1969 -10.4675 1.8873 23 6 1.4349 -9.9101 3.3024 24 6 2.8007 -9.4328 2.7764 25 6 2.1566 -5.9881 0.0057 26 1 -0.4850 0.8401 0.0004 27 1 -0.5886 -3.9872 0.0001 28 1 -1.6957 -6.1816 -0.0004 29 1 1.5267 -11.4986 1.7601 30 1 0.1896 -10.2921 1.5097 31 1 0.7606 -9.0976 3.5732 32 1 1.5053 -10.6797 4.0711 33 1 3.0738 -8.4312 3.1086 34 1 3.6015 -10.1599 2.9103 35 1 3.2352 -5.9352 0.0103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095948752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:40 Heat of formation + Delta-G solvation = -125.524528 kcal Electronic energy + Delta-G solvation = -25717.142426 eV Core-core repulsion = 21531.037776 eV Total energy + Delta-G solvation = -4186.104650 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -49.34654 -39.68006 -39.20362 -38.20841 -37.24415 -35.93212 -35.31440 -32.41015 -31.54733 -30.80296 -28.83479 -26.46920 -25.84125 -23.77467 -23.53192 -21.46253 -20.85211 -19.01819 -18.46661 -17.98840 -17.63804 -17.43702 -16.79620 -16.26347 -16.00430 -15.75276 -15.47196 -15.06524 -14.70451 -14.46913 -14.21550 -14.15631 -13.73637 -13.48039 -13.25262 -12.90579 -12.58178 -12.50398 -12.27705 -12.18087 -12.11069 -11.97544 -11.68767 -11.34992 -11.24813 -11.11836 -10.86612 -10.62594 -10.53270 -10.02918 -9.62505 -9.40571 -9.28830 -8.88137 -8.75157 -6.63097 -4.24450 0.13014 0.52824 0.91272 2.62939 2.89197 3.09418 3.11213 3.15973 3.54553 3.72200 3.81752 3.94130 4.00542 4.21625 4.34952 4.40433 4.59180 4.75904 4.98332 5.02986 5.12637 5.14892 5.20984 5.25192 5.34032 5.45773 5.51877 5.75461 5.79462 5.86207 5.96699 6.17967 6.25398 6.52252 6.73493 7.21272 7.74259 8.50702 8.85580 9.61013 10.53979 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.003186 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.907064 B = 8786.780436 C = 9127.752395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.042 3.958 3 Si 0.948 3.052 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.373 4.373 8 H 0.101 0.899 9 O -0.202 6.202 10 C 0.427 3.573 11 O -0.546 6.546 12 C -0.110 4.110 13 C 0.005 3.995 14 C -0.177 4.177 15 C 0.198 3.802 16 F -0.125 7.125 17 C -0.722 4.722 18 S 2.715 3.285 19 O -0.946 6.946 20 O -0.946 6.946 21 N -1.041 6.041 22 C 0.126 3.874 23 C -0.151 4.151 24 C 0.127 3.873 25 C 0.049 3.951 26 H 0.274 0.726 27 H 0.162 0.838 28 H 0.149 0.851 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -18.253 6.541 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.163 4.163 3 Si 0.772 3.228 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.448 4.448 8 H 0.119 0.881 9 O -0.108 6.108 10 C 0.275 3.725 11 O -0.445 6.445 12 C -0.113 4.113 13 C -0.013 4.013 14 C -0.197 4.197 15 C 0.177 3.823 16 F -0.103 7.103 17 C -0.809 4.809 18 S 2.806 3.194 19 O -0.937 6.937 20 O -0.937 6.937 21 N -0.882 5.882 22 C 0.001 3.999 23 C -0.190 4.190 24 C 0.002 3.998 25 C 0.030 3.970 26 H 0.083 0.917 27 H 0.179 0.821 28 H 0.167 0.833 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.793 -18.253 5.667 19.196 hybrid contribution -0.313 1.209 0.088 1.252 sum -2.106 -17.044 5.755 18.112 Atomic orbital electron populations 1.69958 1.06149 1.28284 1.44698 1.25425 0.95912 0.99102 0.95876 0.85595 0.79122 0.79131 0.78978 1.19645 1.20138 1.18839 1.21395 0.92763 0.79473 1.51180 0.88131 1.83859 1.39269 1.13287 1.74413 1.20416 0.85939 0.85098 0.81056 1.90675 1.14734 1.87591 1.51499 1.19589 0.93645 0.92353 1.05664 1.21853 0.93993 0.98284 0.87178 1.21198 1.01178 0.90819 1.06463 1.17178 0.88946 0.80958 0.95259 1.91553 1.83097 1.42759 1.92916 1.30833 1.05314 1.20457 1.24252 1.01295 0.73407 0.72921 0.71798 1.93595 1.31038 1.83295 1.85742 1.93597 1.80446 1.65963 1.53668 1.60185 1.46466 1.54696 1.26873 1.22760 0.92705 0.92126 0.92293 1.23613 0.97299 1.01654 0.96477 1.22745 0.96257 1.02577 0.78208 1.20919 1.01538 0.88373 0.86213 0.91659 0.82084 0.83280 0.89454 0.89741 0.88885 0.89829 0.89712 0.89344 0.81903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.55 13.67 55.49 0.76 -22.79 16 2 C 0.04 1.13 5.50 -17.52 -0.10 1.04 16 3 Si 0.95 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.37 -10.56 9.65 30.94 0.30 -10.26 16 8 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 9 O -0.20 -5.50 8.99 -21.70 -0.20 -5.69 16 10 C 0.43 10.51 7.83 34.52 0.27 10.78 16 11 O -0.55 -14.67 15.59 -19.29 -0.30 -14.97 16 12 C -0.11 -2.15 5.87 -104.99 -0.62 -2.77 16 13 C 0.01 0.09 9.61 -39.18 -0.38 -0.29 16 14 C -0.18 -2.42 10.01 -39.58 -0.40 -2.82 16 15 C 0.20 2.83 7.22 -39.26 -0.28 2.55 16 16 F -0.13 -1.64 15.33 2.25 0.03 -1.60 16 17 C -0.72 -11.19 5.91 -39.58 -0.23 -11.42 16 18 S 2.71 39.78 5.88 -107.50 -0.63 39.15 16 19 O -0.95 -16.07 16.93 -57.17 -0.97 -17.04 16 20 O -0.95 -15.82 17.39 -57.17 -0.99 -16.81 16 21 N -1.04 -11.27 4.11 -119.12 -0.49 -11.76 16 22 C 0.13 0.98 8.97 -2.98 -0.03 0.96 16 23 C -0.15 -0.90 8.29 -25.80 -0.21 -1.12 16 24 C 0.13 1.01 8.97 -2.98 -0.03 0.98 16 25 C 0.05 0.87 9.09 -39.17 -0.36 0.52 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.16 2.66 7.61 -52.49 -0.40 2.27 16 28 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.65 7.20 -51.93 -0.37 0.28 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.16 2.96 6.91 -52.49 -0.36 2.59 16 LS Contribution 331.33 15.07 4.99 4.99 Total: -1.00 -34.95 331.33 -8.04 -42.99 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -3.17 Total: 0.10 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.06 Total: -11.85 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.27 Total: -34.55 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: -2.46 Total: -54.52 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.03 Total: -1.60 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 39.78 SS G_CDS: -0.63 Total: 39.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.95 -8.04 -42.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095948752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.531 kcal (2) G-P(sol) polarization free energy of solvation -34.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds