Wall clock time and date at job start Tue Mar 31 2020 05:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99892 * 2 1 4 4 H 1.48499 * 109.47245 * 270.00403 * 3 2 1 5 5 H 1.48500 * 109.47195 * 30.00339 * 3 2 1 6 6 H 1.48496 * 109.47317 * 150.00242 * 3 2 1 7 7 C 1.38798 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00582 * 179.97438 * 7 2 1 9 9 O 1.34858 * 119.99851 * 359.97438 * 7 2 1 10 10 C 1.34751 * 117.00468 * 180.02562 * 9 7 2 11 11 O 1.21529 * 119.99393 * 0.02562 * 10 9 7 12 12 C 1.47532 * 120.00534 * 179.97438 * 10 9 7 13 13 C 1.39760 * 120.12661 * 0.02562 * 12 10 9 14 14 C 1.37792 * 119.87403 * 179.97438 * 13 12 10 15 15 C 1.38691 * 120.12399 * 0.02562 * 14 13 12 16 16 F 1.35106 * 119.87047 * 179.97438 * 15 14 13 17 17 C 1.38649 * 120.26380 * 359.97438 * 15 14 13 18 18 S 1.76198 * 119.94367 * 179.97438 * 17 15 14 19 19 O 1.42102 * 106.40124 * 181.46158 * 18 17 15 20 20 O 1.42100 * 106.39768 * 48.54157 * 18 17 15 21 21 N 1.65597 * 107.21910 * 295.00379 * 18 17 15 22 22 C 1.47577 * 134.49122 * 89.99689 * 21 18 17 23 23 C 1.53947 * 86.11672 * 204.64013 * 22 21 18 24 24 C 1.47577 * 134.49092 * 269.99619 * 21 18 17 25 25 C 1.37838 * 120.11932 * 0.27221 * 17 15 14 26 26 H 0.97004 * 120.00174 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.06125 * 359.96988 * 13 12 10 28 28 H 1.08000 * 119.93692 * 180.02562 * 14 13 12 29 29 H 1.08999 * 113.76881 * 90.34058 * 22 21 18 30 30 H 1.08997 * 113.77366 * 318.93833 * 22 21 18 31 31 H 1.09004 * 113.74083 * 90.73886 * 23 22 21 32 32 H 1.08999 * 113.74208 * 222.05046 * 23 22 21 33 33 H 1.09003 * 113.76710 * 41.06241 * 24 21 18 34 34 H 1.08991 * 113.77259 * 269.65855 * 24 21 18 35 35 H 1.08001 * 120.06162 * 179.71924 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0082 -1.2020 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3340 -2.3699 -0.0005 10 6 2.0679 -3.5001 -0.0005 11 8 3.2815 -3.4364 -0.0001 12 6 1.3982 -4.8146 0.0000 13 6 0.0027 -4.8909 0.0000 14 6 -0.6174 -6.1215 0.0000 15 6 0.1407 -7.2829 0.0006 16 9 -0.4727 -8.4867 0.0011 17 6 1.5254 -7.2135 0.0006 18 16 2.4802 -8.6943 0.0019 19 8 3.8430 -8.2931 0.0364 20 8 1.9391 -9.5215 -1.0190 21 7 2.1839 -9.4674 1.4361 22 6 1.1969 -10.4675 1.8873 23 6 1.4349 -9.9101 3.3024 24 6 2.8007 -9.4328 2.7764 25 6 2.1566 -5.9881 0.0057 26 1 -0.4850 0.8401 0.0004 27 1 -0.5886 -3.9872 0.0001 28 1 -1.6957 -6.1816 -0.0004 29 1 1.5267 -11.4986 1.7601 30 1 0.1896 -10.2921 1.5097 31 1 0.7606 -9.0976 3.5732 32 1 1.5053 -10.6797 4.0711 33 1 3.0738 -8.4312 3.1086 34 1 3.6015 -10.1599 2.9103 35 1 3.2352 -5.9352 0.0103 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095948752.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:40 Heat of formation + Delta-G solvation = -150.285957 kcal Electronic energy + Delta-G solvation = -25718.216162 eV Core-core repulsion = 21531.037776 eV Total energy + Delta-G solvation = -4187.178386 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.52638 -41.44802 -39.87315 -39.80984 -38.49065 -37.34852 -37.17969 -34.42865 -32.88875 -32.24937 -29.57797 -27.81486 -27.07822 -25.33503 -24.87854 -22.52672 -22.11445 -20.26860 -19.99199 -19.60324 -18.95184 -18.69294 -18.05218 -17.54135 -17.15833 -16.96152 -16.76719 -16.68341 -16.45746 -16.21991 -15.46770 -15.05013 -14.98559 -14.76772 -14.60671 -14.12002 -13.92767 -13.72096 -13.49227 -13.40688 -13.38683 -13.28347 -13.19134 -12.95586 -12.47629 -12.25228 -12.15329 -12.04769 -11.82695 -11.75544 -11.31884 -10.89900 -10.76726 -10.26871 -10.14676 -8.63763 -6.39983 -1.02226 -0.80587 -0.44008 1.19940 1.33342 1.46805 1.50415 1.73968 1.99769 2.24862 2.39863 2.51381 2.56187 2.93759 2.98018 3.35415 3.65543 3.72118 3.73959 3.82394 3.85611 4.25812 4.30994 4.42883 4.55286 4.60002 4.65556 4.73452 4.79298 4.91604 4.98176 5.08233 5.09875 5.34038 5.35934 5.52148 5.72266 6.47918 6.80878 7.57809 8.55906 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.003186 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.907064 B = 8786.780436 C = 9127.752395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.004 3.996 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.256 1.256 6 H -0.264 1.264 7 C -0.421 4.421 8 H 0.084 0.916 9 O -0.222 6.222 10 C 0.430 3.570 11 O -0.577 6.577 12 C -0.139 4.139 13 C 0.013 3.987 14 C -0.156 4.156 15 C 0.215 3.785 16 F -0.109 7.109 17 C -0.723 4.723 18 S 2.725 3.275 19 O -0.978 6.978 20 O -0.969 6.969 21 N -1.045 6.045 22 C 0.117 3.883 23 C -0.133 4.133 24 C 0.115 3.885 25 C 0.047 3.953 26 H 0.283 0.717 27 H 0.160 0.840 28 H 0.195 0.805 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.079 -19.850 7.676 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.198 4.198 3 Si 0.836 3.164 4 H -0.185 1.185 5 H -0.180 1.180 6 H -0.189 1.189 7 C -0.496 4.496 8 H 0.102 0.898 9 O -0.129 6.129 10 C 0.279 3.721 11 O -0.477 6.477 12 C -0.142 4.142 13 C -0.006 4.006 14 C -0.175 4.175 15 C 0.194 3.806 16 F -0.087 7.087 17 C -0.808 4.808 18 S 2.816 3.184 19 O -0.968 6.968 20 O -0.960 6.960 21 N -0.889 5.889 22 C -0.007 4.007 23 C -0.172 4.172 24 C -0.009 4.009 25 C 0.028 3.972 26 H 0.093 0.907 27 H 0.178 0.822 28 H 0.212 0.788 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.126 0.874 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.431 -19.868 6.793 21.276 hybrid contribution 0.138 1.370 -0.198 1.391 sum -3.292 -18.498 6.595 19.913 Atomic orbital electron populations 1.70014 1.07499 1.29862 1.45158 1.26524 0.96947 1.02089 0.94281 0.84622 0.77775 0.74380 0.79603 1.18501 1.18013 1.18863 1.21533 0.92472 0.80772 1.54859 0.89842 1.83874 1.39627 1.13741 1.75696 1.21360 0.85874 0.86255 0.78567 1.90628 1.16342 1.88319 1.52438 1.19362 0.95153 0.90009 1.09632 1.21843 0.92404 0.99681 0.86631 1.21527 1.03169 0.88884 1.03902 1.17254 0.88457 0.81719 0.93132 1.91602 1.82680 1.41989 1.92463 1.30964 1.06301 1.19840 1.23679 1.00764 0.72593 0.72522 0.72562 1.93550 1.32888 1.83763 1.86637 1.93560 1.80619 1.66083 1.55708 1.60102 1.47785 1.54701 1.26346 1.23170 0.92105 0.92474 0.92940 1.23551 0.95401 1.02204 0.96081 1.23149 0.98187 1.03229 0.76379 1.20748 1.00994 0.88762 0.86722 0.90731 0.82238 0.78806 0.87420 0.89603 0.88876 0.86604 0.90151 0.87431 0.83256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.75 13.67 21.63 0.30 -49.46 16 2 C 0.00 0.20 5.50 84.89 0.47 0.67 16 3 Si 1.02 41.93 29.55 68.60 2.03 43.96 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 7 C -0.42 -25.04 9.65 67.95 0.66 -24.38 16 8 H 0.08 5.08 6.86 -2.91 -0.02 5.06 16 9 O -0.22 -12.74 8.99 11.11 0.10 -12.64 16 10 C 0.43 22.35 7.83 70.27 0.55 22.90 16 11 O -0.58 -32.97 15.59 19.74 0.31 -32.66 16 12 C -0.14 -5.60 5.87 -20.10 -0.12 -5.72 16 13 C 0.01 0.42 9.61 22.53 0.22 0.63 16 14 C -0.16 -3.79 10.01 22.27 0.22 -3.57 16 15 C 0.22 5.61 7.22 22.48 0.16 5.77 16 16 F -0.11 -2.48 15.33 44.97 0.69 -1.79 16 17 C -0.72 -21.87 5.91 22.27 0.13 -21.74 16 18 S 2.72 78.35 5.88 -56.49 -0.33 78.01 16 19 O -0.98 -33.91 16.93 -128.00 -2.17 -36.08 16 20 O -0.97 -31.51 17.39 -128.00 -2.23 -33.73 16 21 N -1.05 -20.59 4.11 -530.79 -2.18 -22.77 16 22 C 0.12 1.44 8.97 86.48 0.78 2.21 16 23 C -0.13 -1.10 8.29 31.26 0.26 -0.84 16 24 C 0.11 1.55 8.97 86.48 0.78 2.32 16 25 C 0.05 1.73 9.09 22.53 0.20 1.93 16 26 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.16 5.26 7.61 -2.91 -0.02 5.23 16 28 H 0.19 3.04 8.06 -2.91 -0.02 3.01 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.03 7.20 -2.39 -0.02 1.02 16 31 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.15 5.79 6.91 -2.91 -0.02 5.77 16 Total: -1.00 -79.73 331.33 1.97 -77.77 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.15 Total: 9.20 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: 4.30 Total: -19.81 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.89 Total: -72.23 kcal Atomic # 8 Polarization: -111.13 SS G_CDS: -3.99 Total: -115.11 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.69 Total: -1.79 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 78.35 SS G_CDS: -0.33 Total: 78.01 kcal Total: -79.73 1.97 -77.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095948752.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.518 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds