Wall clock time and date at job start Tue Mar 31 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86796 * 120.00068 * 2 1 4 4 H 1.48500 * 109.46889 * 274.97819 * 3 2 1 5 5 H 1.48496 * 109.47195 * 34.97464 * 3 2 1 6 6 H 1.48498 * 109.46929 * 154.97972 * 3 2 1 7 7 C 1.40049 * 119.99669 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99968 * 186.14190 * 7 2 1 9 9 C 1.46374 * 120.00090 * 6.13839 * 7 2 1 10 10 O 1.21682 * 120.00383 * 353.88225 * 9 7 2 11 11 N 1.34782 * 120.00105 * 173.88521 * 9 7 2 12 12 C 1.47575 * 134.49507 * 180.02562 * 11 9 7 13 13 C 1.53953 * 86.11763 * 155.35623 * 12 11 9 14 14 S 1.81389 * 113.74045 * 137.95333 * 13 12 11 15 15 O 1.42104 * 110.54643 * 75.30099 * 14 13 12 16 16 O 1.42095 * 110.54507 * 298.54862 * 14 13 12 17 17 C 1.76199 * 104.44756 * 186.92442 * 14 13 12 18 18 C 1.38248 * 119.98743 * 270.25099 * 17 14 13 19 19 C 1.38216 * 120.00938 * 180.21172 * 18 17 14 20 20 C 1.38347 * 119.99049 * 359.51148 * 19 18 17 21 21 Cl 1.73597 * 120.01352 * 180.27504 * 20 19 18 22 22 C 1.38357 * 119.97198 * 0.26197 * 20 19 18 23 23 C 1.38210 * 119.98747 * 359.97438 * 22 20 19 24 24 C 1.47818 * 134.45029 * 359.86112 * 11 9 7 25 25 H 0.96999 * 120.00166 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.76820 * 41.05409 * 12 11 9 27 27 H 1.09001 * 113.76983 * 269.65529 * 12 11 9 28 28 H 1.08994 * 113.73838 * 269.15524 * 13 12 11 29 29 H 1.07995 * 119.99235 * 0.02562 * 18 17 14 30 30 H 1.08002 * 120.00352 * 179.79383 * 19 18 17 31 31 H 1.08007 * 120.00347 * 180.02562 * 22 20 19 32 32 H 1.08002 * 119.99102 * 180.02562 * 23 22 20 33 33 H 1.09001 * 113.76375 * 90.38893 * 24 11 9 34 34 H 1.08993 * 113.84245 * 318.92428 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4948 2.6200 0.8025 6 1 3.5869 1.4120 0.5921 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1006 9 6 1.2813 -2.4769 -0.1344 10 8 0.0645 -2.4830 -0.1351 11 7 1.9609 -3.6343 -0.2579 12 6 1.5734 -5.0502 -0.4095 13 6 2.9482 -5.2466 -1.0740 14 16 3.7974 -6.7648 -0.5600 15 8 3.2123 -7.8994 -1.1843 16 8 4.0489 -6.7465 0.8384 17 6 5.3961 -6.6431 -1.2907 18 6 5.6168 -7.1487 -2.5583 19 6 6.8718 -7.0574 -3.1301 20 6 7.9047 -6.4509 -2.4378 21 17 9.4794 -6.3296 -3.1583 22 6 7.6821 -5.9409 -1.1711 23 6 6.4279 -6.0371 -0.5983 24 6 3.3941 -3.9939 -0.2987 25 1 -0.4850 0.8400 -0.0004 26 1 0.7325 -5.2055 -1.0855 27 1 1.4633 -5.5793 0.5370 28 1 2.9360 -5.1118 -2.1555 29 1 4.8092 -7.6178 -3.1005 30 1 7.0450 -7.4554 -4.1191 31 1 8.4880 -5.4669 -0.6304 32 1 6.2539 -5.6387 0.3903 33 1 3.8203 -4.2119 0.6805 34 1 4.0039 -3.3076 -0.8862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096122155.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:38 Heat of formation + Delta-G solvation = -41.155907 kcal Electronic energy + Delta-G solvation = -22868.327374 eV Core-core repulsion = 19114.217597 eV Total energy + Delta-G solvation = -3754.109777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.62402 -39.08836 -37.16743 -36.96464 -36.01047 -35.89243 -32.61748 -31.56762 -31.41643 -29.13969 -26.54116 -25.57072 -23.62472 -23.37323 -22.26497 -19.30561 -18.98147 -18.27232 -17.35701 -16.83955 -16.47021 -16.24602 -15.75907 -15.13742 -15.02823 -14.54793 -14.18435 -14.03005 -14.00769 -13.70080 -13.11189 -12.89011 -12.57685 -12.38819 -12.17258 -12.13090 -12.11921 -12.01024 -11.71452 -11.36214 -11.31096 -11.14985 -11.04369 -10.97428 -10.63895 -10.36823 -10.26845 -9.53444 -9.47711 -8.98628 -7.83530 -7.55331 -6.35002 -4.80007 -0.10837 0.32598 0.81403 1.57754 2.68469 2.93610 3.05676 3.12948 3.16676 3.67489 3.76290 3.87404 4.08362 4.16307 4.39789 4.40495 4.41637 4.81564 4.84974 5.04736 5.09194 5.15096 5.45185 5.47200 5.58506 5.59847 5.63871 5.70519 5.80703 5.83503 6.22880 6.24617 6.41370 7.30290 7.90400 8.25279 8.87065 9.31141 10.39060 10.58763 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.003435 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.083608 B = 8149.570467 C = 9726.753735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.086 3.914 3 Si 0.912 3.088 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.071 0.929 9 C 0.577 3.423 10 O -0.568 6.568 11 N -0.649 5.649 12 C 0.138 3.862 13 C -0.609 4.609 14 S 2.492 3.508 15 O -0.937 6.937 16 O -0.929 6.929 17 C -0.652 4.652 18 C -0.010 4.010 19 C -0.133 4.133 20 C 0.013 3.987 21 Cl -0.061 7.061 22 C -0.131 4.131 23 C -0.007 4.007 24 C 0.143 3.857 25 H 0.271 0.729 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.086 0.914 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.849 -12.061 -5.664 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.573 4.573 8 H 0.089 0.911 9 C 0.385 3.615 10 O -0.450 6.450 11 N -0.393 5.393 12 C 0.012 3.988 13 C -0.720 4.720 14 S 2.672 3.328 15 O -0.934 6.934 16 O -0.926 6.926 17 C -0.738 4.738 18 C -0.029 4.029 19 C -0.153 4.153 20 C -0.014 4.014 21 Cl -0.032 7.032 22 C -0.151 4.151 23 C -0.025 4.025 24 C 0.017 3.983 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.178 0.822 29 H 0.169 0.831 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.172 0.828 33 H 0.104 0.896 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.724 -12.418 -5.204 20.700 hybrid contribution 1.230 1.264 -0.737 1.911 sum 16.954 -11.154 -5.941 21.145 Atomic orbital electron populations 1.70011 1.07159 1.27710 1.34437 1.25744 0.94688 1.00454 0.92529 0.86281 0.80221 0.81070 0.78798 1.19683 1.20260 1.18731 1.20793 0.94212 0.88733 1.53531 0.91077 1.18176 0.86540 0.80628 0.76121 1.90637 1.13681 1.84771 1.55866 1.50358 1.04732 1.03996 1.80196 1.22399 0.91887 0.86545 0.97926 1.32486 1.10876 1.16671 1.12011 1.05791 0.74642 0.77168 0.75192 1.93557 1.76443 1.45898 1.77530 1.93580 1.83998 1.86823 1.28226 1.30829 1.23045 1.13004 1.06901 1.20963 0.97282 0.92514 0.92186 1.21194 0.92030 1.00950 1.01105 1.21305 0.87142 0.98552 0.94368 1.98402 1.25083 1.96544 1.83131 1.21230 0.98453 1.01368 0.94028 1.21012 0.90927 0.91597 0.99011 1.22530 0.88509 0.89707 0.97533 0.91788 0.89151 0.90628 0.82206 0.83089 0.83936 0.83787 0.82795 0.89585 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.31 11.85 55.55 0.66 -21.65 16 2 C 0.09 2.33 5.49 -17.37 -0.10 2.23 16 3 Si 0.91 19.38 29.56 -169.99 -5.03 14.35 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.54 -14.63 9.32 -35.63 -0.33 -14.97 16 8 H 0.07 1.76 7.70 -52.48 -0.40 1.36 16 9 C 0.58 16.13 7.97 -12.99 -0.10 16.03 16 10 O -0.57 -18.21 15.77 5.20 0.08 -18.13 16 11 N -0.65 -14.12 3.61 -180.02 -0.65 -14.77 16 12 C 0.14 2.38 8.43 -2.97 -0.03 2.35 16 13 C -0.61 -7.98 4.50 -25.81 -0.12 -8.10 16 14 S 2.49 30.57 5.09 -107.50 -0.55 30.03 16 15 O -0.94 -13.38 17.13 -57.54 -0.99 -14.36 16 16 O -0.93 -13.55 16.49 -57.54 -0.95 -14.50 16 17 C -0.65 -6.82 5.66 -39.58 -0.22 -7.05 16 18 C -0.01 -0.10 9.47 -39.59 -0.37 -0.47 16 19 C -0.13 -1.14 9.83 -39.55 -0.39 -1.53 16 20 C 0.01 0.12 6.32 -39.50 -0.25 -0.13 16 21 Cl -0.06 -0.50 28.96 -51.86 -1.50 -2.00 16 22 C -0.13 -1.15 9.83 -39.55 -0.39 -1.54 16 23 C -0.01 -0.06 9.47 -39.59 -0.37 -0.44 16 24 C 0.14 2.24 8.05 -2.84 -0.02 2.22 16 25 H 0.27 7.13 8.29 -40.82 -0.34 6.80 16 26 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.16 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.15 1.17 7.58 -52.49 -0.40 0.77 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 31 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.15 1.28 7.57 -52.49 -0.40 0.88 16 33 H 0.09 1.21 7.57 -51.93 -0.39 0.81 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -37.49 331.48 -9.88 -47.36 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.26 Total: 0.06 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.70 Total: -11.39 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.01 Total: -36.42 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -1.85 Total: -46.99 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Atomic # 16 Polarization: 30.57 SS G_CDS: -0.55 Total: 30.03 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.49 -9.88 -47.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096122155.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.209 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds