Wall clock time and date at job start Tue Mar 31 2020 05:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46727 * 2 1 4 4 C 1.46500 * 119.99761 * 274.99784 * 3 2 1 5 5 C 1.50700 * 109.47165 * 274.99812 * 4 3 2 6 6 H 1.08000 * 120.00218 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00333 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00394 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99666 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47409 * 89.99959 * 9 7 5 11 11 H 1.48500 * 109.47321 * 210.00389 * 9 7 5 12 12 H 1.48501 * 109.47355 * 330.00126 * 9 7 5 13 13 S 1.65602 * 119.99935 * 95.00043 * 3 2 1 14 14 O 1.42095 * 106.40245 * 336.45770 * 13 3 2 15 15 O 1.42101 * 106.39849 * 203.53561 * 13 3 2 16 16 C 1.76207 * 107.21814 * 89.99815 * 13 3 2 17 17 C 1.32565 * 119.99820 * 117.79745 * 16 13 3 18 18 C 1.47803 * 120.00317 * 17.59621 * 17 16 13 19 19 C 1.39550 * 120.12614 * 225.41320 * 18 17 16 20 20 C 1.37948 * 119.86457 * 179.77118 * 19 18 17 21 21 C 1.38471 * 120.12859 * 0.50082 * 20 19 18 22 22 Cl 1.73597 * 119.86922 * 179.76815 * 21 20 19 23 23 C 1.38459 * 120.25863 * 359.74994 * 21 20 19 24 24 C 1.37942 * 120.13040 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47431 * 300.00155 * 1 2 3 26 26 H 1.09004 * 109.47037 * 59.99996 * 1 2 3 27 27 H 1.08998 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47383 * 240.00387 * 2 1 3 29 29 H 1.08994 * 109.47198 * 119.99845 * 2 1 3 30 30 H 1.08994 * 109.47433 * 35.00578 * 4 3 2 31 31 H 1.09002 * 109.46951 * 155.00278 * 4 3 2 32 32 H 0.96997 * 120.00579 * 180.02562 * 8 7 5 33 33 H 1.07999 * 119.99375 * 297.79682 * 16 13 3 34 34 H 1.08004 * 119.99670 * 197.59686 * 17 16 13 35 35 H 1.07990 * 120.06864 * 359.97438 * 19 18 17 36 36 H 1.07996 * 119.93598 * 180.23034 * 20 19 18 37 37 H 1.08007 * 119.93513 * 179.97438 * 23 21 20 38 38 H 1.08005 * 120.06939 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4947 1.7889 -1.8823 6 1 4.1721 1.1113 -1.3839 7 6 3.8530 2.3615 -3.0843 8 7 5.0191 2.0820 -3.6242 9 14 2.6817 3.5341 -3.9461 10 1 2.9464 4.9223 -3.4899 11 1 2.8863 3.4480 -5.4144 12 1 1.2812 3.1642 -3.6190 13 16 2.4121 2.1203 1.4287 14 8 1.6868 1.4416 2.4448 15 8 2.3056 3.5187 1.1998 16 6 4.1169 1.7942 1.7320 17 6 4.9824 2.7964 1.7953 18 6 4.4996 4.1779 2.0024 19 6 5.0085 5.2212 1.2279 20 6 4.5506 6.5079 1.4225 21 6 3.5956 6.7666 2.3912 22 17 3.0285 8.3892 2.6346 23 6 3.0909 5.7362 3.1663 24 6 3.5378 4.4449 2.9775 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.3617 1.8098 -1.9453 31 1 2.0920 3.1803 -1.0756 32 1 5.2713 2.4851 -4.4697 33 1 4.4567 0.7779 1.8664 34 1 6.0403 2.6033 1.6954 35 1 5.7568 5.0213 0.4754 36 1 4.9409 7.3156 0.8212 37 1 2.3464 5.9440 3.9207 38 1 3.1431 3.6418 3.5823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096258901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:20 Heat of formation + Delta-G solvation = -39.860407 kcal Electronic energy + Delta-G solvation = -24422.480003 eV Core-core repulsion = 20804.259498 eV Total energy + Delta-G solvation = -3618.220505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.064 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47838 -38.20487 -37.76906 -37.55272 -36.78592 -35.25010 -34.65568 -32.12624 -31.80898 -30.42731 -28.92461 -24.86393 -24.49516 -23.82597 -23.11828 -21.89243 -19.57045 -19.00043 -18.79527 -18.07537 -17.62088 -17.12257 -16.64085 -16.24925 -15.86549 -15.71925 -15.20579 -14.78518 -14.63276 -14.57245 -14.45623 -14.33320 -14.11961 -13.69484 -13.52200 -13.29554 -12.96629 -12.80230 -12.76145 -12.66767 -12.61804 -12.26390 -12.21472 -12.09920 -11.93587 -11.79172 -11.67950 -11.54964 -11.08894 -10.75649 -9.94189 -9.77730 -9.36418 -8.27902 -6.31673 -0.63188 -0.22687 0.35468 0.74090 1.09771 1.37488 1.41129 1.47734 2.07324 2.35338 2.62626 2.84727 3.07582 3.41698 3.51847 3.73682 3.85367 3.93801 4.18604 4.32020 4.39959 4.44101 4.46323 4.65432 4.68990 4.74663 4.91974 4.94917 4.98192 4.99838 5.06236 5.19827 5.21695 5.39244 5.39776 5.43783 5.49024 5.76128 5.80119 6.31852 6.72668 7.32741 8.87255 Molecular weight = 329.06amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.005591 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.665000 B = 5006.865826 C = 6296.303808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.983 5.983 4 C 0.222 3.778 5 C -0.536 4.536 6 H 0.052 0.948 7 C 0.028 3.972 8 N -0.936 5.936 9 Si 0.918 3.082 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.244 1.244 13 S 2.677 3.323 14 O -0.992 6.992 15 O -0.966 6.966 16 C -0.751 4.751 17 C 0.062 3.938 18 C -0.096 4.096 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.027 4.027 22 Cl -0.066 7.066 23 C -0.113 4.113 24 C -0.069 4.069 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.174 0.826 34 H 0.161 0.839 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 4.372 11.792 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.820 5.820 4 C 0.098 3.902 5 C -0.575 4.575 6 H 0.070 0.930 7 C -0.172 4.172 8 N -0.576 5.576 9 Si 0.742 3.258 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.168 1.168 13 S 2.771 3.229 14 O -0.982 6.982 15 O -0.956 6.956 16 C -0.859 4.859 17 C 0.042 3.958 18 C -0.097 4.097 19 C -0.099 4.099 20 C -0.137 4.137 21 C -0.054 4.054 22 Cl -0.037 7.037 23 C -0.132 4.132 24 C -0.088 4.088 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.192 0.808 34 H 0.178 0.822 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.440 4.988 12.172 13.597 hybrid contribution 0.648 0.009 -1.053 1.236 sum -2.792 4.997 11.120 12.506 Atomic orbital electron populations 1.22205 0.95019 1.03585 1.01871 1.21387 0.95300 0.81101 1.03516 1.57155 1.78830 1.24297 1.21754 1.19351 0.96427 0.92409 0.82047 1.21645 1.01896 1.27845 1.06161 0.93003 1.25547 0.96291 0.97643 0.97705 1.70002 1.22464 1.45524 1.19646 0.86144 0.81314 0.80224 0.78109 1.19448 1.20743 1.16774 1.02051 0.75064 0.73331 0.72457 1.93505 1.71825 1.76031 1.56832 1.93665 1.86699 1.29920 1.85324 1.33691 1.26222 1.08351 1.17641 1.22017 1.01539 0.89565 0.82634 1.19379 0.98282 0.93736 0.98269 1.21302 0.99398 0.91384 0.97811 1.21146 0.97114 0.97770 0.97713 1.21081 0.98857 0.86295 0.99141 1.98350 1.88426 1.20706 1.96221 1.20991 1.00573 0.91090 1.00515 1.21140 0.93862 0.97149 0.96678 0.93056 0.92549 0.88986 0.90014 0.89739 0.93550 0.94081 0.92417 0.80814 0.82197 0.83799 0.83054 0.82947 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.65 10.24 71.98 0.74 -3.91 16 2 C 0.11 3.61 6.06 86.38 0.52 4.13 16 3 N -0.98 -37.81 2.77 -519.85 -1.44 -39.25 16 4 C 0.22 9.88 4.50 85.63 0.39 10.26 16 5 C -0.54 -27.87 9.94 25.60 0.25 -27.61 16 6 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 7 C 0.03 1.48 5.47 84.66 0.46 1.95 16 8 N -0.94 -54.19 13.96 21.45 0.30 -53.90 16 9 Si 0.92 41.31 27.47 68.60 1.88 43.20 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 13 S 2.68 98.72 4.78 -56.49 -0.27 98.45 16 14 O -0.99 -37.56 16.99 -128.00 -2.17 -39.74 16 15 O -0.97 -38.57 11.62 -128.00 -1.49 -40.06 16 16 C -0.75 -24.67 10.10 66.67 0.67 -24.00 16 17 C 0.06 1.91 9.72 23.65 0.23 2.14 16 18 C -0.10 -3.02 3.92 -20.12 -0.08 -3.10 16 19 C -0.08 -2.43 9.78 22.52 0.22 -2.21 16 20 C -0.12 -3.31 9.81 22.26 0.22 -3.09 16 21 C -0.03 -0.75 6.32 22.38 0.14 -0.61 16 22 Cl -0.07 -1.57 28.95 -2.72 -0.08 -1.65 16 23 C -0.11 -3.14 9.81 22.25 0.22 -2.93 16 24 C -0.07 -2.09 6.51 22.51 0.15 -1.95 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 29 H 0.08 2.41 7.61 -2.39 -0.02 2.39 16 30 H 0.05 1.99 7.17 -2.39 -0.02 1.97 16 31 H 0.04 1.88 6.34 -2.39 -0.02 1.87 16 32 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.17 5.00 8.06 -2.91 -0.02 4.98 16 34 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 35 H 0.14 4.00 8.06 -2.92 -0.02 3.98 16 36 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 37 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.13 3.50 7.41 -2.91 -0.02 3.48 16 Total: -1.00 -64.52 347.19 1.87 -62.65 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 1.00 Total: 21.22 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 4.13 Total: -50.92 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -1.14 Total: -93.15 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -3.66 Total: -79.80 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 1.88 Total: 43.20 kcal Atomic # 16 Polarization: 98.72 SS G_CDS: -0.27 Total: 98.45 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -64.52 1.87 -62.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096258901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.793 kcal (2) G-P(sol) polarization free energy of solvation -64.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds