Wall clock time and date at job start Tue Mar 31 2020 04:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 C 1.53004 * 109.47408 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47097 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46723 * 180.02562 * 5 4 3 7 7 C 1.53008 * 109.46909 * 179.97438 * 6 5 4 8 8 C 1.52995 * 109.46907 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47031 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47413 * 180.02562 * 9 8 7 11 11 N 1.30106 * 124.94959 * 270.02575 * 10 9 8 12 12 C 1.35787 * 109.64359 * 179.97438 * 11 10 9 13 13 C 1.39734 * 133.60143 * 179.97438 * 12 11 10 14 14 C 1.36605 * 119.88806 * 180.02562 * 13 12 11 15 15 C 1.38776 * 120.66622 * 359.97438 * 14 13 12 16 16 C 1.37851 * 120.45485 * 0.03810 * 15 14 13 17 17 C 1.38832 * 119.68776 * 359.97438 * 16 15 14 18 18 N 1.36036 * 124.94846 * 90.00113 * 10 9 8 19 19 C 1.46505 * 126.35096 * 359.97438 * 18 10 9 20 20 C 1.50696 * 109.47091 * 270.01925 * 19 18 10 21 21 H 1.08002 * 120.00193 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00197 * 180.02562 * 20 19 18 23 23 N 1.31514 * 119.99917 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 119.99705 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46988 * 90.00274 * 24 22 20 26 26 H 1.48495 * 109.47440 * 210.00100 * 24 22 20 27 27 H 1.48503 * 109.47415 * 330.00545 * 24 22 20 28 28 H 1.09004 * 109.47285 * 59.99514 * 1 2 3 29 29 H 1.09000 * 109.47398 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46942 * 299.99713 * 1 2 3 31 31 H 1.09000 * 109.46942 * 240.00287 * 2 1 3 32 32 H 1.09004 * 109.47285 * 120.00486 * 2 1 3 33 33 H 1.09000 * 109.46836 * 60.00222 * 3 2 1 34 34 H 1.09000 * 109.46856 * 300.00315 * 3 2 1 35 35 H 1.08998 * 109.46639 * 59.99578 * 4 3 2 36 36 H 1.09005 * 109.46621 * 300.00264 * 4 3 2 37 37 H 1.09000 * 109.47145 * 60.00035 * 5 4 3 38 38 H 1.09000 * 109.46858 * 299.99938 * 5 4 3 39 39 H 1.09000 * 109.47285 * 60.00117 * 6 5 4 40 40 H 1.09000 * 109.47400 * 299.99602 * 6 5 4 41 41 H 1.09000 * 109.46902 * 60.00066 * 7 6 5 42 42 H 1.09000 * 109.46915 * 300.00083 * 7 6 5 43 43 H 1.09000 * 109.47132 * 60.00395 * 8 7 6 44 44 H 1.08991 * 109.47454 * 300.00120 * 8 7 6 45 45 H 1.09004 * 109.47272 * 60.00060 * 9 8 7 46 46 H 1.09004 * 109.47296 * 300.00475 * 9 8 7 47 47 H 1.08009 * 120.05649 * 0.29744 * 13 12 11 48 48 H 1.08001 * 119.66343 * 179.97438 * 14 13 12 49 49 H 1.08002 * 119.77372 * 180.02562 * 15 14 13 50 50 H 1.08000 * 120.15788 * 179.97438 * 16 15 14 51 51 H 1.09001 * 109.46639 * 30.01863 * 19 18 10 52 52 H 1.08995 * 109.47160 * 150.01574 * 19 18 10 53 53 H 0.97003 * 119.99527 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6101 2.8848 -0.0013 7 6 6.1201 4.3274 -0.0013 8 6 7.6501 4.3273 -0.0019 9 6 8.1601 5.7697 -0.0026 10 6 9.6671 5.7697 -0.0039 11 7 10.4134 5.7694 1.0619 12 6 11.7228 5.7690 0.7024 13 6 12.9200 5.7689 1.4230 14 6 14.1140 5.7689 0.7593 15 6 14.1527 5.7684 -0.6279 16 6 12.9843 5.7686 -1.3595 17 6 11.7614 5.7689 -0.7022 18 7 10.4455 5.7696 -1.1195 19 6 9.9746 5.7689 -2.5069 20 6 9.8132 4.3479 -2.9818 21 1 10.0392 3.5273 -2.3170 22 6 9.3780 4.0952 -4.2655 23 7 9.2377 2.8550 -4.6801 24 14 8.9878 5.5144 -5.4156 25 1 10.2104 5.8907 -6.1700 26 1 7.9258 5.1021 -6.3681 27 1 8.5172 6.6788 -4.6231 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9287 -0.8908 36 1 3.9337 0.9284 0.8892 37 1 3.7171 3.3982 0.8904 38 1 3.7163 3.3992 -0.8895 39 1 5.9726 2.3716 -0.8920 40 1 5.9742 2.3704 0.8880 41 1 5.7576 4.8409 0.8892 42 1 5.7560 4.8414 -0.8908 43 1 8.0130 3.8136 -0.8922 44 1 8.0138 3.8133 0.8877 45 1 7.7972 6.2839 0.8874 46 1 7.7964 6.2834 -0.8925 47 1 12.9013 5.7645 2.5029 48 1 15.0371 5.7693 1.3199 49 1 15.1047 5.7679 -1.1378 50 1 13.0200 5.7686 -2.4389 51 1 9.0150 6.2826 -2.5650 52 1 10.7004 6.2825 -3.1372 53 1 8.9311 2.6774 -5.5831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102594312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:37 Heat of formation + Delta-G solvation = 11.899295 kcal Electronic energy + Delta-G solvation = -27224.559341 eV Core-core repulsion = 23673.481229 eV Total energy + Delta-G solvation = -3551.078112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.221 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.51546 -37.21702 -36.83344 -35.29481 -34.16198 -32.99526 -32.37708 -30.36819 -29.94343 -28.22564 -27.73840 -26.17664 -23.51088 -23.04893 -21.62638 -21.45111 -21.14788 -20.71073 -20.54268 -19.06874 -17.24010 -16.82956 -16.24966 -16.13225 -15.22682 -15.00779 -14.86041 -14.26434 -14.15759 -14.12195 -13.73708 -13.53734 -13.49181 -13.04582 -12.97454 -12.91549 -12.62212 -12.33966 -12.09394 -11.90186 -11.76234 -11.58683 -11.53574 -11.32258 -11.14748 -11.10641 -10.99729 -10.84226 -10.78624 -10.68393 -10.61405 -10.49618 -10.41646 -10.13837 -10.06611 -9.87160 -9.40625 -9.33540 -8.87832 -7.66156 -7.46167 -6.36432 -4.40788 1.50160 2.09560 3.06071 3.12525 3.15333 3.34953 3.54506 4.11769 4.40401 4.54037 4.66932 4.76292 4.91592 4.91927 5.04055 5.06026 5.15836 5.26038 5.29122 5.40290 5.45631 5.47977 5.50867 5.59232 5.62300 5.65968 5.74487 5.80686 5.84524 5.87300 5.91715 5.94742 5.97283 5.99437 6.02069 6.11701 6.12027 6.18017 6.19714 6.25346 6.29418 6.34605 6.36203 6.41735 6.54367 6.67018 6.72452 6.87188 6.96297 7.10599 7.17335 7.21728 7.43461 7.81963 8.20077 8.55088 8.67664 9.18823 10.75383 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.002690 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.754746 B =10407.861235 C =12324.766405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.035 4.035 10 C 0.291 3.709 11 N -0.516 5.516 12 C 0.041 3.959 13 C -0.075 4.075 14 C -0.137 4.137 15 C -0.123 4.123 16 C -0.094 4.094 17 C 0.053 3.947 18 N -0.453 5.453 19 C 0.209 3.791 20 C -0.543 4.543 21 H 0.082 0.918 22 C 0.084 3.916 23 N -0.881 5.881 24 Si 0.869 3.131 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.047 0.953 52 H 0.038 0.962 53 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 1.710 8.237 11.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.160 4.160 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.150 4.150 8 C -0.156 4.156 9 C -0.074 4.074 10 C 0.026 3.974 11 N -0.237 5.237 12 C -0.079 4.079 13 C -0.095 4.095 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.114 4.114 17 C -0.059 4.059 18 N -0.137 5.137 19 C 0.089 3.911 20 C -0.581 4.581 21 H 0.100 0.900 22 C -0.122 4.122 23 N -0.517 5.517 24 Si 0.695 3.305 25 H -0.197 1.197 26 H -0.204 1.204 27 H -0.189 1.189 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.137 0.863 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.139 0.861 51 H 0.065 0.935 52 H 0.056 0.944 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.097 1.594 8.720 12.005 hybrid contribution 0.141 0.513 -1.751 1.830 sum -7.955 2.107 6.969 10.784 Atomic orbital electron populations 1.21781 0.96147 1.01392 1.01687 1.21554 0.95607 0.97265 1.02019 1.21631 0.95842 0.96440 1.01839 1.21630 0.94876 0.97309 1.02145 1.21593 0.95922 0.96347 1.01676 1.21592 0.94651 0.97137 1.02432 1.21525 0.95237 0.96721 1.01537 1.21590 0.94920 0.95050 1.03989 1.20107 0.84606 0.99291 1.03380 1.23423 0.95391 0.97553 0.81065 1.70349 1.00589 1.25064 1.27662 1.19084 0.92186 1.06052 0.90568 1.19833 0.89408 1.01266 0.98995 1.20462 0.96957 1.04024 0.94302 1.20719 0.96875 1.02790 0.93878 1.20040 0.89317 1.02402 0.99657 1.18910 0.86063 1.06084 0.94822 1.45585 1.03829 1.55623 1.08711 1.20067 0.95823 0.99963 0.75216 1.21096 1.47488 0.90062 0.99446 0.90015 1.24785 0.94343 0.95619 0.97403 1.69867 1.44860 1.18541 1.18427 0.86967 0.79120 0.82839 0.81599 1.19693 1.20412 1.18908 0.92818 0.92963 0.92889 0.92021 0.92152 0.92250 0.92125 0.91876 0.92178 0.92387 0.92132 0.91430 0.92265 0.92477 0.91942 0.89452 0.91914 0.89441 0.90022 0.86292 0.86269 0.86084 0.86111 0.93504 0.94386 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.15 0.37 -0.78 16 2 C -0.13 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.23 16 4 C -0.12 -1.27 5.21 -26.73 -0.14 -1.41 16 5 C -0.12 -1.31 5.21 -26.73 -0.14 -1.45 16 6 C -0.12 -1.57 5.21 -26.73 -0.14 -1.71 16 7 C -0.11 -1.52 5.21 -26.73 -0.14 -1.66 16 8 C -0.12 -1.93 5.20 -26.73 -0.14 -2.07 16 9 C -0.03 -0.58 5.51 -27.88 -0.15 -0.73 16 10 C 0.29 5.94 7.11 -154.83 -1.10 4.83 16 11 N -0.52 -10.89 11.27 -8.24 -0.09 -10.98 16 12 C 0.04 0.85 7.23 -84.70 -0.61 0.24 16 13 C -0.08 -1.30 10.05 -39.61 -0.40 -1.70 16 14 C -0.14 -2.06 9.96 -39.97 -0.40 -2.46 16 15 C -0.12 -1.93 10.03 -39.52 -0.40 -2.33 16 16 C -0.09 -1.77 10.05 -39.50 -0.40 -2.16 16 17 C 0.05 1.13 6.88 -83.98 -0.58 0.55 16 18 N -0.45 -9.88 2.79 -112.43 -0.31 -10.20 16 19 C 0.21 4.70 4.75 -5.19 -0.02 4.68 16 20 C -0.54 -14.16 9.54 -34.44 -0.33 -14.49 16 21 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 23 N -0.88 -24.90 13.96 55.43 0.77 -24.12 16 24 Si 0.87 19.28 27.47 -169.99 -4.67 14.61 16 25 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.26 -5.52 6.54 56.52 0.37 -5.15 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.09 1.76 7.74 -51.93 -0.40 1.36 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.08 1.30 7.01 -51.93 -0.36 0.94 16 47 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 48 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 49 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 50 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 51 H 0.05 1.00 6.05 -51.93 -0.31 0.69 16 52 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 53 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 425.32 15.07 6.41 6.41 Total: -1.00 -29.15 425.32 -12.94 -42.10 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -9.94 Total: 5.19 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: -5.11 Total: -23.00 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.37 Total: -45.30 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.67 Total: 14.61 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -29.15 -12.94 -42.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102594312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.995 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds