Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00115 * 2 1 4 4 C 1.50704 * 109.47303 * 66.04370 * 3 2 1 5 5 O 1.21287 * 119.99687 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99935 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99514 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00559 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99750 * 180.02562 * 7 6 4 10 10 N 1.31412 * 120.00174 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00164 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47018 * 90.00408 * 11 9 7 13 13 H 1.48500 * 109.47652 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.47302 * 330.00840 * 11 9 7 15 15 C 1.46902 * 111.00212 * 236.04592 * 2 1 3 16 16 C 1.50700 * 109.46673 * 293.95644 * 15 2 1 17 17 C 1.34849 * 125.88252 * 94.97653 * 16 15 2 18 18 C 1.40929 * 107.43096 * 180.02562 * 17 16 15 19 19 Br 1.89105 * 126.29929 * 180.02562 * 18 17 16 20 20 C 1.34903 * 107.40756 * 359.73498 * 18 17 16 21 21 N 1.36338 * 125.87881 * 274.99273 * 16 15 2 22 22 C 1.46499 * 125.63842 * 359.97438 * 21 16 15 23 23 H 1.08994 * 109.47015 * 183.94951 * 1 2 3 24 24 H 1.08997 * 109.47133 * 303.95889 * 1 2 3 25 25 H 1.08999 * 109.46813 * 63.95624 * 1 2 3 26 26 H 1.08999 * 109.47513 * 186.04681 * 3 2 1 27 27 H 1.09005 * 109.47242 * 306.04625 * 3 2 1 28 28 H 0.97002 * 120.00261 * 359.97438 * 6 4 3 29 29 H 0.97000 * 120.00411 * 179.97438 * 10 9 7 30 30 H 1.08997 * 109.47318 * 173.95429 * 15 2 1 31 31 H 1.09002 * 109.47187 * 53.95251 * 15 2 1 32 32 H 1.07998 * 126.28601 * 0.04075 * 17 16 15 33 33 H 1.08000 * 125.90388 * 180.29372 * 20 18 17 34 34 H 1.09002 * 109.47391 * 89.99367 * 22 21 16 35 35 H 1.09001 * 109.46813 * 329.99423 * 22 21 16 36 36 H 1.09004 * 109.47041 * 209.99550 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0054 1.4454 2.1411 6 7 2.0181 3.3202 1.5232 7 6 1.6923 3.9347 2.7047 8 1 1.1300 3.3989 3.4550 9 6 2.0847 5.2474 2.9363 10 7 1.7721 5.8367 4.0685 11 14 3.0567 6.1745 1.6382 12 1 2.1192 6.8778 0.7262 13 1 3.9430 7.1667 2.2980 14 1 3.8806 5.2163 0.8583 15 6 1.9955 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9728 17 6 0.5642 -2.8358 -1.5104 18 6 0.6070 -4.1860 -1.1090 19 35 -0.6440 -5.5293 -1.5638 20 6 1.7079 -4.3455 -0.3458 21 7 2.3410 -3.1405 -0.2542 22 6 3.5766 -2.8798 0.4886 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5612 1.9274 -0.8309 28 1 2.5235 3.8014 0.8495 29 1 2.0463 6.7529 4.2303 30 1 3.0798 -0.6611 -1.1756 31 1 1.5612 -0.3873 -2.0628 32 1 -0.1891 -2.3781 -2.1343 33 1 2.0311 -5.2673 0.1148 34 1 3.3318 -2.5839 1.5087 35 1 4.1312 -2.0781 0.0010 36 1 4.1860 -3.7833 0.5086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151529151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = 34.500060 kcal Electronic energy + Delta-G solvation = -19912.840848 eV Core-core repulsion = 16672.957049 eV Total energy + Delta-G solvation = -3239.883799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.45131 -38.74911 -36.44679 -33.93792 -33.33343 -31.70716 -31.08896 -29.90713 -27.91164 -26.57085 -26.04255 -24.52768 -22.11498 -20.48795 -19.41243 -19.25391 -18.28058 -17.01853 -16.18116 -15.60837 -15.34040 -15.01134 -14.66239 -14.03807 -13.99287 -13.54389 -13.43847 -13.10386 -12.79689 -12.66966 -12.50747 -12.36304 -12.29019 -12.04646 -11.61629 -11.39770 -11.25541 -11.06447 -10.82868 -10.61998 -10.17947 -9.99784 -9.55953 -8.63517 -8.56894 -8.25586 -8.19244 -7.94018 -6.33027 -3.84572 1.75413 1.98707 2.60200 2.95390 2.99850 3.04487 3.13042 3.71284 4.03797 4.08695 4.62433 4.67361 4.75923 4.88545 5.02514 5.12988 5.18785 5.34932 5.39397 5.44394 5.53612 5.62534 5.81844 5.85566 5.89107 5.98708 5.98806 6.54605 6.62788 6.93984 7.07029 7.18841 7.24234 7.56466 8.12581 8.58224 8.93438 9.40340 9.81428 10.80115 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.033603 B = 0.002434 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.060072 B =11499.370590 C =11709.760921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.042 3.958 4 C 0.453 3.547 5 O -0.557 6.557 6 N -0.591 5.591 7 C -0.304 4.304 8 H 0.120 0.880 9 C 0.041 3.959 10 N -0.881 5.881 11 Si 0.880 3.120 12 H -0.271 1.271 13 H -0.277 1.277 14 H -0.270 1.270 15 C 0.118 3.882 16 C 0.046 3.954 17 C -0.168 4.168 18 C -0.167 4.167 19 Br -0.045 7.045 20 C 0.025 3.975 21 N -0.427 5.427 22 C 0.074 3.926 23 H 0.067 0.933 24 H 0.095 0.905 25 H 0.016 0.984 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.370 0.630 29 H 0.273 0.727 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.169 0.831 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -20.139 -15.205 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.240 5.240 3 C -0.089 4.089 4 C 0.238 3.762 5 O -0.439 6.439 6 N -0.231 5.231 7 C -0.433 4.433 8 H 0.137 0.863 9 C -0.162 4.162 10 N -0.522 5.522 11 Si 0.706 3.294 12 H -0.197 1.197 13 H -0.202 1.202 14 H -0.195 1.195 15 C -0.010 4.010 16 C -0.067 4.067 17 C -0.194 4.194 18 C -0.253 4.253 19 Br 0.039 6.961 20 C -0.110 4.110 21 N -0.102 5.102 22 C -0.067 4.067 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.034 0.966 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.203 0.797 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.158 0.842 33 H 0.186 0.814 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.090 -20.970 -14.015 25.309 hybrid contribution 0.841 1.570 -1.491 2.323 sum 2.931 -19.400 -15.506 25.008 Atomic orbital electron populations 1.22579 0.86000 1.02756 1.01326 1.61601 1.09509 1.12265 1.40592 1.21913 1.00623 0.89190 0.97187 1.19602 0.85180 0.82428 0.88945 1.90539 1.42544 1.64067 1.46758 1.42211 1.50966 1.11974 1.17942 1.19421 1.33737 0.96203 0.93936 0.86286 1.25039 0.97898 0.96502 0.96737 1.69620 1.45770 1.13553 1.23210 0.86673 0.80471 0.80536 0.81694 1.19651 1.20196 1.19514 1.20570 1.00212 0.87149 0.93069 1.20104 0.95175 0.91665 0.99727 1.20500 0.99807 0.92219 1.06893 1.20931 0.99099 0.94481 1.10815 1.96547 1.56825 1.49706 1.93055 1.21604 0.95030 0.89883 1.04445 1.43913 1.20684 1.07627 1.37929 1.22079 0.83957 1.02963 0.97710 0.91440 0.88653 0.96571 0.89397 0.93134 0.79747 0.91607 0.90206 0.92496 0.84182 0.81410 0.89791 0.89601 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.95 60.07 0.54 0.87 16 2 N -0.52 -7.93 4.49 -245.82 -1.10 -9.03 16 3 C 0.04 0.67 5.45 -4.97 -0.03 0.64 16 4 C 0.45 9.98 7.47 -10.98 -0.08 9.89 16 5 O -0.56 -14.58 13.91 5.55 0.08 -14.51 16 6 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 7 C -0.30 -8.47 10.16 -14.93 -0.15 -8.63 16 8 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 9 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 10 N -0.88 -25.55 13.96 55.50 0.77 -24.77 16 11 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 14 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 15 C 0.12 1.39 5.12 -4.97 -0.03 1.37 16 16 C 0.05 0.57 5.64 -81.79 -0.46 0.11 16 17 C -0.17 -2.11 9.71 -39.77 -0.39 -2.49 16 18 C -0.17 -2.03 6.57 -39.75 -0.26 -2.29 16 19 Br -0.05 -0.50 34.09 -68.01 -2.32 -2.81 16 20 C 0.03 0.28 11.40 -16.69 -0.19 0.08 16 21 N -0.43 -4.79 3.15 -119.86 -0.38 -5.16 16 22 C 0.07 0.63 10.92 59.85 0.65 1.28 16 23 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 24 H 0.10 1.88 5.82 -51.93 -0.30 1.58 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 27 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 28 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.08 0.80 7.00 -51.93 -0.36 0.44 16 31 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.66 7.12 -51.93 -0.37 0.29 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 322.71 15.07 4.86 4.86 Total: -1.00 -32.66 322.71 -7.88 -40.55 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.54 Total: 8.49 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.49 Total: 1.87 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.76 Total: -52.76 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.08 Total: -14.51 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.32 Total: -2.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.66 -7.88 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151529151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.045 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds