Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00115 * 2 1 4 4 C 1.50704 * 109.47303 * 66.04370 * 3 2 1 5 5 O 1.21287 * 119.99687 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99935 * 180.02562 * 4 3 2 7 7 C 1.37096 * 119.99514 * 180.02562 * 6 4 3 8 8 H 1.08001 * 120.00559 * 359.97438 * 7 6 4 9 9 C 1.38950 * 119.99750 * 180.02562 * 7 6 4 10 10 N 1.31412 * 120.00174 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00164 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47018 * 90.00408 * 11 9 7 13 13 H 1.48500 * 109.47652 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.47302 * 330.00840 * 11 9 7 15 15 C 1.46902 * 111.00212 * 236.04592 * 2 1 3 16 16 C 1.50700 * 109.46673 * 293.95644 * 15 2 1 17 17 C 1.34849 * 125.88252 * 94.97653 * 16 15 2 18 18 C 1.40929 * 107.43096 * 180.02562 * 17 16 15 19 19 Br 1.89105 * 126.29929 * 180.02562 * 18 17 16 20 20 C 1.34903 * 107.40756 * 359.73498 * 18 17 16 21 21 N 1.36338 * 125.87881 * 274.99273 * 16 15 2 22 22 C 1.46499 * 125.63842 * 359.97438 * 21 16 15 23 23 H 1.08994 * 109.47015 * 183.94951 * 1 2 3 24 24 H 1.08997 * 109.47133 * 303.95889 * 1 2 3 25 25 H 1.08999 * 109.46813 * 63.95624 * 1 2 3 26 26 H 1.08999 * 109.47513 * 186.04681 * 3 2 1 27 27 H 1.09005 * 109.47242 * 306.04625 * 3 2 1 28 28 H 0.97002 * 120.00261 * 359.97438 * 6 4 3 29 29 H 0.97000 * 120.00411 * 179.97438 * 10 9 7 30 30 H 1.08997 * 109.47318 * 173.95429 * 15 2 1 31 31 H 1.09002 * 109.47187 * 53.95251 * 15 2 1 32 32 H 1.07998 * 126.28601 * 0.04075 * 17 16 15 33 33 H 1.08000 * 125.90388 * 180.29372 * 20 18 17 34 34 H 1.09002 * 109.47391 * 89.99367 * 22 21 16 35 35 H 1.09001 * 109.46813 * 329.99423 * 22 21 16 36 36 H 1.09004 * 109.47041 * 209.99550 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 8 1.0054 1.4454 2.1411 6 7 2.0181 3.3202 1.5232 7 6 1.6923 3.9347 2.7047 8 1 1.1300 3.3989 3.4550 9 6 2.0847 5.2474 2.9363 10 7 1.7721 5.8367 4.0685 11 14 3.0567 6.1745 1.6382 12 1 2.1192 6.8778 0.7262 13 1 3.9430 7.1667 2.2980 14 1 3.8806 5.2163 0.8583 15 6 1.9955 -0.7660 -1.1376 16 6 1.6369 -2.2204 -0.9728 17 6 0.5642 -2.8358 -1.5104 18 6 0.6070 -4.1860 -1.1090 19 35 -0.6440 -5.5293 -1.5638 20 6 1.7079 -4.3455 -0.3458 21 7 2.3410 -3.1405 -0.2542 22 6 3.5766 -2.8798 0.4886 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0798 1.3444 -0.1083 27 1 1.5612 1.9274 -0.8309 28 1 2.5235 3.8014 0.8495 29 1 2.0463 6.7529 4.2303 30 1 3.0798 -0.6611 -1.1756 31 1 1.5612 -0.3873 -2.0628 32 1 -0.1891 -2.3781 -2.1343 33 1 2.0311 -5.2673 0.1148 34 1 3.3318 -2.5839 1.5087 35 1 4.1312 -2.0781 0.0010 36 1 4.1860 -3.7833 0.5086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151529151.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = 10.908151 kcal Electronic energy + Delta-G solvation = -19913.863870 eV Core-core repulsion = 16672.957049 eV Total energy + Delta-G solvation = -3240.906821 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.29240 -40.42660 -37.77288 -35.89098 -34.12649 -33.73664 -32.01765 -30.84853 -29.30497 -27.62281 -26.87321 -26.24325 -23.38104 -21.34472 -21.22785 -20.22276 -20.07238 -18.04327 -17.54473 -16.82091 -16.74929 -16.43741 -15.82119 -15.45806 -15.25832 -14.96002 -14.59236 -14.35757 -14.17093 -13.75400 -13.67333 -13.43604 -13.39500 -13.09187 -12.98390 -12.61961 -12.56415 -12.37370 -12.36250 -11.96639 -11.67142 -11.44774 -11.03800 -10.36940 -10.21236 -9.45026 -9.28163 -8.97957 -8.39394 -6.00124 0.90602 1.12715 1.31399 1.37378 1.46169 1.69231 1.99525 2.17980 2.24865 2.75500 3.17140 3.31755 3.78944 4.00557 4.13129 4.14984 4.24843 4.38325 4.43210 4.46862 4.54128 4.56286 4.69613 4.71642 4.81658 4.99194 5.11290 5.21410 5.54972 5.74339 5.88860 5.98710 6.10199 6.16831 6.35223 6.62419 6.91459 7.42975 8.01346 8.78462 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.033603 B = 0.002434 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.060072 B =11499.370590 C =11709.760921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.535 5.535 3 C 0.055 3.945 4 C 0.452 3.548 5 O -0.607 6.607 6 N -0.592 5.592 7 C -0.325 4.325 8 H 0.053 0.947 9 C -0.017 4.017 10 N -0.937 5.937 11 Si 0.966 3.034 12 H -0.259 1.259 13 H -0.277 1.277 14 H -0.227 1.227 15 C 0.123 3.877 16 C 0.032 3.968 17 C -0.182 4.182 18 C -0.190 4.190 19 Br -0.042 7.042 20 C 0.027 3.973 21 N -0.431 5.431 22 C 0.070 3.930 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.036 0.964 26 H 0.126 0.874 27 H 0.082 0.918 28 H 0.390 0.610 29 H 0.278 0.722 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.141 0.859 33 H 0.191 0.809 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.908 -20.324 -18.515 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.260 5.260 3 C -0.076 4.076 4 C 0.240 3.760 5 O -0.491 6.491 6 N -0.235 5.235 7 C -0.455 4.455 8 H 0.071 0.929 9 C -0.215 4.215 10 N -0.578 5.578 11 Si 0.785 3.215 12 H -0.183 1.183 13 H -0.203 1.203 14 H -0.150 1.150 15 C -0.004 4.004 16 C -0.081 4.081 17 C -0.208 4.208 18 C -0.276 4.276 19 Br 0.042 6.958 20 C -0.109 4.109 21 N -0.105 5.105 22 C -0.070 4.070 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.144 0.856 27 H 0.100 0.900 28 H 0.225 0.775 29 H 0.088 0.912 30 H 0.122 0.878 31 H 0.093 0.907 32 H 0.159 0.841 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.532 -21.183 -17.351 27.754 hybrid contribution -0.013 1.477 -0.370 1.522 sum 4.519 -19.706 -17.720 26.884 Atomic orbital electron populations 1.22337 0.87103 1.01933 1.00272 1.61485 1.08790 1.12408 1.43286 1.21853 1.03036 0.89172 0.93544 1.20920 0.82856 0.81723 0.90545 1.90534 1.44150 1.65177 1.49218 1.42027 1.51864 1.12653 1.16925 1.18974 1.34631 0.96928 0.94936 0.92876 1.26133 0.98751 0.97003 0.99664 1.69812 1.47457 1.14311 1.26260 0.85356 0.78856 0.79055 0.78183 1.18335 1.20256 1.15012 1.20638 1.01574 0.86056 0.92109 1.20249 0.95462 0.92172 1.00200 1.20663 1.00141 0.92662 1.07310 1.21149 0.99939 0.94731 1.11774 1.96533 1.56816 1.49386 1.93086 1.22026 0.94519 0.90686 1.03630 1.44156 1.21247 1.07444 1.37618 1.22261 0.83333 1.04905 0.96535 0.91663 0.93103 0.94534 0.85580 0.90002 0.77463 0.91230 0.87751 0.90720 0.84099 0.79178 0.91424 0.88394 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 8.95 127.69 1.14 2.14 16 2 N -0.54 -15.18 4.49 -931.64 -4.18 -19.36 16 3 C 0.05 1.54 5.45 85.56 0.47 2.01 16 4 C 0.45 19.68 7.47 87.66 0.66 20.34 16 5 O -0.61 -33.04 13.91 -3.05 -0.04 -33.08 16 6 N -0.59 -27.10 5.09 -306.99 -1.56 -28.66 16 7 C -0.33 -18.82 10.16 84.04 0.85 -17.97 16 8 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 9 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 10 N -0.94 -56.38 13.96 21.66 0.30 -56.08 16 11 Si 0.97 37.94 27.74 68.60 1.90 39.84 16 12 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 13 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.23 -7.30 6.52 99.48 0.65 -6.66 16 15 C 0.12 2.45 5.12 85.56 0.44 2.89 16 16 C 0.03 0.72 5.64 41.08 0.23 0.95 16 17 C -0.18 -4.29 9.71 22.15 0.22 -4.07 16 18 C -0.19 -4.37 6.57 22.16 0.15 -4.23 16 19 Br -0.04 -0.88 34.09 -20.37 -0.69 -1.58 16 20 C 0.03 0.54 11.40 83.21 0.95 1.48 16 21 N -0.43 -8.68 3.15 -533.12 -1.68 -10.36 16 22 C 0.07 1.00 10.92 127.77 1.40 2.40 16 23 H 0.06 2.04 6.54 -2.39 -0.02 2.03 16 24 H 0.05 2.06 5.82 -2.39 -0.01 2.05 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.13 2.68 7.93 -2.39 -0.02 2.66 16 27 H 0.08 1.88 8.12 -2.38 -0.02 1.86 16 28 H 0.39 14.51 5.76 -92.71 -0.53 13.98 16 29 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.10 1.57 7.00 -2.39 -0.02 1.55 16 31 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 32 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.16 7.12 -2.39 -0.02 1.14 16 36 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -77.56 322.71 1.51 -76.05 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.51 Total: 27.77 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 6.96 Total: 5.46 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -7.12 Total: -114.46 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.04 Total: -33.08 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 1.90 Total: 39.84 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.69 Total: -1.58 kcal Total: -77.56 1.51 -76.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151529151.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.954 kcal (2) G-P(sol) polarization free energy of solvation -77.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds