Wall clock time and date at job start Tue Mar 31 2020 05:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46938 * 303.99950 * 3 2 1 5 5 C 1.36942 * 119.99853 * 61.68848 * 4 3 2 6 6 H 1.08000 * 119.99860 * 205.24291 * 5 4 3 7 7 C 1.38808 * 119.99864 * 25.51385 * 5 4 3 8 8 N 1.31618 * 120.00221 * 7.18366 * 7 5 4 9 9 Si 1.86800 * 120.00012 * 187.18157 * 7 5 4 10 10 H 1.48505 * 109.47220 * 90.00017 * 9 7 5 11 11 H 1.48503 * 109.47239 * 209.99985 * 9 7 5 12 12 H 1.48492 * 109.47214 * 330.00184 * 9 7 5 13 13 S 1.65600 * 120.00280 * 241.68296 * 4 3 2 14 14 O 1.42095 * 106.40027 * 23.54460 * 13 4 3 15 15 O 1.42107 * 106.39974 * 156.46214 * 13 4 3 16 16 C 1.76199 * 107.21933 * 270.00386 * 13 4 3 17 17 C 1.38262 * 119.98865 * 115.00235 * 16 13 4 18 18 C 1.38222 * 120.05597 * 179.97438 * 17 16 13 19 19 C 1.38221 * 120.02021 * 359.97438 * 18 17 16 20 20 C 1.38434 * 119.97790 * 0.02562 * 19 18 17 21 21 F 1.35098 * 120.02995 * 180.02562 * 20 19 18 22 22 C 1.38180 * 119.98335 * 294.72373 * 16 13 4 23 23 N 1.48000 * 120.01757 * 359.97438 * 22 16 13 24 24 O 1.21801 * 119.99610 * 90.00052 * 23 22 16 25 25 O 1.21800 * 120.00254 * 270.00210 * 23 22 16 26 26 H 1.09003 * 109.46960 * 184.00412 * 3 2 1 27 27 H 1.08996 * 109.47238 * 64.00564 * 3 2 1 28 28 H 0.96997 * 120.00425 * 179.97438 * 8 7 5 29 29 H 1.08007 * 119.97233 * 359.97438 * 17 16 13 30 30 H 1.07997 * 119.99018 * 180.02562 * 18 17 16 31 31 H 1.07998 * 120.01111 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.7715 1.1451 5 6 2.7951 -2.1030 1.2518 6 1 2.7785 -2.5768 2.2222 7 6 2.5165 -2.8450 0.1123 8 7 2.6790 -2.3085 -1.0785 9 14 1.9108 -4.6052 0.2688 10 1 0.4273 -4.6141 0.3359 11 1 2.3577 -5.3892 -0.9106 12 1 2.4658 -5.2115 1.5054 13 16 4.0137 -0.0342 2.3103 14 8 3.7021 1.3508 2.2493 15 8 3.8657 -0.8130 3.4898 16 6 5.6996 -0.1870 1.8215 17 6 6.4331 0.9422 1.5075 18 6 7.7559 0.8240 1.1244 19 6 8.3470 -0.4235 1.0552 20 6 7.6136 -1.5548 1.3693 21 9 8.1905 -2.7746 1.3025 22 6 6.2897 -1.4348 1.7576 23 7 5.5062 -2.6427 2.1002 24 8 4.8832 -3.2304 1.2341 25 8 5.4844 -3.0492 3.2482 26 1 2.9709 1.0260 0.0718 27 1 2.9716 -0.4496 -0.9237 28 1 2.4846 -2.8271 -1.8748 29 1 5.9722 1.9174 1.5617 30 1 8.3280 1.7067 0.8798 31 1 9.3805 -0.5157 0.7554 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157175174.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:40 Heat of formation + Delta-G solvation = -28.778672 kcal Electronic energy + Delta-G solvation = -27410.352335 eV Core-core repulsion = 23124.902557 eV Total energy + Delta-G solvation = -4285.449778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.036 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.20612 -41.20853 -38.83059 -37.09419 -36.13788 -35.47906 -34.91883 -34.71434 -32.14323 -31.83386 -30.85314 -27.86449 -25.99671 -24.51797 -23.43056 -22.18049 -19.32969 -18.86588 -18.31847 -17.88184 -17.83146 -17.47542 -16.61791 -16.41963 -15.84016 -15.60085 -15.55167 -15.24187 -15.09463 -14.53344 -13.83336 -13.57357 -13.32945 -12.70381 -12.63502 -12.49505 -12.28817 -12.21633 -11.68447 -11.50434 -11.45264 -11.11957 -11.00682 -10.90328 -10.71083 -10.51764 -10.45966 -10.42662 -10.24161 -10.03830 -9.61368 -9.56649 -9.09003 -8.69888 -7.00270 -4.48697 0.50132 0.75569 1.11392 1.42370 2.03228 3.05688 3.07046 3.09069 3.17457 3.38058 3.65428 3.80115 3.84337 4.16069 4.39412 4.47723 4.54996 4.74320 4.91299 4.99857 5.19914 5.32949 5.53775 5.68671 5.71942 5.91855 5.98059 6.42095 6.42986 6.59485 6.92983 7.19956 7.75369 8.00159 8.39083 8.50735 8.56874 9.78541 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.013260 B = 0.007824 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.046369 B = 3577.993731 C = 4635.366379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.244 3.756 3 C 0.197 3.803 4 N -0.793 5.793 5 C -0.165 4.165 6 H 0.134 0.866 7 C 0.056 3.944 8 N -0.796 5.796 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.270 1.270 12 H -0.245 1.245 13 S 2.449 3.551 14 O -0.988 6.988 15 O -0.955 6.955 16 C -0.589 4.589 17 C -0.046 4.046 18 C -0.088 4.088 19 C -0.123 4.123 20 C 0.120 3.880 21 F -0.127 7.127 22 C 0.038 3.962 23 N -0.009 5.009 24 O -0.075 6.075 25 O -0.187 6.187 26 H 0.103 0.897 27 H 0.163 0.837 28 H 0.292 0.708 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 2.953 -3.605 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.075 4.075 3 C 0.069 3.931 4 N -0.613 5.613 5 C -0.323 4.323 6 H 0.151 0.849 7 C -0.163 4.163 8 N -0.436 5.436 9 Si 0.761 3.239 10 H -0.197 1.197 11 H -0.195 1.195 12 H -0.168 1.168 13 S 2.547 3.453 14 O -0.977 6.977 15 O -0.944 6.944 16 C -0.662 4.662 17 C -0.066 4.066 18 C -0.107 4.107 19 C -0.142 4.142 20 C 0.099 3.901 21 F -0.106 7.106 22 C -0.045 4.045 23 N 0.498 4.502 24 O -0.299 6.299 25 O -0.381 6.381 26 H 0.121 0.879 27 H 0.180 0.820 28 H 0.103 0.897 29 H 0.175 0.825 30 H 0.165 0.835 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.205 4.183 -2.855 9.642 hybrid contribution 1.159 -1.332 -0.390 1.808 sum 9.364 2.850 -3.245 10.312 Atomic orbital electron populations 1.81000 1.13279 1.10483 1.09516 1.29228 0.95126 0.91240 0.91888 1.19336 0.81743 0.96652 0.95410 1.54930 1.46992 1.18633 1.40792 1.20747 1.29975 0.84951 0.96589 0.84873 1.25991 0.94685 1.01586 0.94000 1.69494 1.37332 1.37768 0.98965 0.85640 0.78737 0.79033 0.80530 1.19667 1.19463 1.16755 1.16153 0.73374 0.75356 0.80376 1.93333 1.82649 1.33913 1.87836 1.93487 1.84314 1.69442 1.47122 1.33134 1.31122 0.93759 1.08188 1.21084 0.93426 0.98047 0.93997 1.21400 0.95381 0.97042 0.96829 1.21204 1.00826 0.90832 1.01358 1.17294 0.89225 0.81634 1.01973 1.91566 1.84167 1.40968 1.93858 1.20409 0.91041 0.87388 1.05650 1.42960 1.02363 1.03521 1.01322 1.94548 1.36632 1.54943 1.43802 1.94530 1.68569 1.70096 1.04903 0.87887 0.82024 0.89651 0.82478 0.83503 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.14 18.54 42.15 0.78 -9.36 16 2 C 0.24 5.00 14.47 -20.76 -0.30 4.70 16 3 C 0.20 3.68 5.52 -6.83 -0.04 3.64 16 4 N -0.79 -16.86 3.04 -62.78 -0.19 -17.06 16 5 C -0.17 -3.70 5.37 -15.06 -0.08 -3.78 16 6 H 0.13 3.17 7.05 -52.49 -0.37 2.80 16 7 C 0.06 1.18 3.83 -17.43 -0.07 1.11 16 8 N -0.80 -15.88 9.89 55.49 0.55 -15.33 16 9 Si 0.94 17.78 28.97 -169.99 -4.92 12.85 16 10 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 11 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 12 H -0.24 -4.75 7.11 56.52 0.40 -4.34 16 13 S 2.45 53.54 5.22 -107.50 -0.56 52.98 16 14 O -0.99 -21.68 15.55 -57.17 -0.89 -22.57 16 15 O -0.95 -24.18 15.13 -63.56 -0.96 -25.14 16 16 C -0.59 -11.27 5.91 -39.59 -0.23 -11.50 16 17 C -0.05 -0.69 9.55 -39.58 -0.38 -1.06 16 18 C -0.09 -1.02 10.04 -39.59 -0.40 -1.42 16 19 C -0.12 -1.54 10.03 -39.52 -0.40 -1.93 16 20 C 0.12 2.03 7.30 -39.42 -0.29 1.74 16 21 F -0.13 -2.20 17.10 2.25 0.04 -2.16 16 22 C 0.04 0.76 6.10 -79.89 -0.49 0.27 16 23 N -0.01 -0.21 2.61 33.99 0.09 -0.12 16 24 O -0.08 -1.69 13.61 -29.46 -0.40 -2.09 16 25 O -0.19 -4.54 18.22 -34.31 -0.63 -5.16 16 26 H 0.10 1.66 6.94 -51.93 -0.36 1.30 16 27 H 0.16 2.92 5.46 -51.93 -0.28 2.63 16 28 H 0.29 5.42 8.31 -40.82 -0.34 5.08 16 29 H 0.16 2.08 7.33 -52.48 -0.38 1.69 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 298.53 15.07 4.50 4.50 Total: -1.00 -28.86 298.53 -6.64 -35.51 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -1.38 Total: 1.39 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.67 Total: -8.23 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 1.23 Total: -41.86 kcal Atomic # 8 Polarization: -52.10 SS G_CDS: -2.88 Total: -54.97 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -4.92 Total: 12.85 kcal Atomic # 16 Polarization: 53.54 SS G_CDS: -0.56 Total: 52.98 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.86 -6.64 -35.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157175174.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.729 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds