Wall clock time and date at job start Tue Mar 31 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47008 * 2 1 4 4 C 1.42897 * 113.99583 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46894 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47315 * 65.00282 * 5 4 3 7 7 C 1.42899 * 114.00057 * 180.02562 * 6 5 4 8 8 H 1.09000 * 110.29006 * 329.32831 * 7 6 5 9 9 C 1.54267 * 110.32270 * 91.45194 * 7 6 5 10 10 C 1.54376 * 105.05815 * 118.89549 * 9 7 6 11 11 N 1.48559 * 104.59840 * 23.85169 * 10 9 7 12 12 C 1.46894 * 111.00461 * 200.95770 * 11 10 9 13 13 H 1.09003 * 109.47188 * 63.15498 * 12 11 10 14 14 C 1.53004 * 109.47552 * 303.15589 * 12 11 10 15 15 C 1.50699 * 109.47724 * 183.15271 * 12 11 10 16 16 O 1.21283 * 119.99369 * 17.16687 * 15 12 11 17 17 N 1.34768 * 120.00621 * 197.17080 * 15 12 11 18 18 C 1.46504 * 119.99816 * 355.26077 * 17 15 12 19 19 C 1.46502 * 120.00068 * 175.26600 * 17 15 12 20 20 C 1.50695 * 109.47218 * 90.00040 * 19 17 15 21 21 H 1.07995 * 120.00118 * 359.97438 * 20 19 17 22 22 C 1.37876 * 119.99875 * 180.02562 * 20 19 17 23 23 N 1.31518 * 119.99925 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00335 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47220 * 90.00058 * 24 22 20 26 26 H 1.48499 * 109.47471 * 210.00625 * 24 22 20 27 27 H 1.48504 * 109.46666 * 330.00052 * 24 22 20 28 28 C 1.48558 * 104.22122 * 320.51926 * 11 10 9 29 29 H 1.08998 * 109.47065 * 299.99757 * 1 2 3 30 30 H 1.09001 * 109.46719 * 59.99710 * 1 2 3 31 31 H 1.08996 * 109.46986 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47065 * 240.00242 * 2 1 3 33 33 H 1.09001 * 109.47341 * 119.99859 * 2 1 3 34 34 H 1.09000 * 109.48052 * 299.99851 * 4 3 2 35 35 H 1.08999 * 109.47173 * 60.00774 * 4 3 2 36 36 H 1.09004 * 109.47507 * 185.00202 * 5 4 3 37 37 H 1.09006 * 109.47105 * 305.00255 * 5 4 3 38 38 H 1.08994 * 110.32332 * 237.79014 * 9 7 6 39 39 H 1.09003 * 110.32418 * 359.89847 * 9 7 6 40 40 H 1.08998 * 110.41383 * 142.63337 * 10 9 7 41 41 H 1.09002 * 110.41339 * 264.95748 * 10 9 7 42 42 H 1.09001 * 109.46627 * 305.58149 * 14 12 11 43 43 H 1.09000 * 109.46679 * 65.57683 * 14 12 11 44 44 H 1.08992 * 109.47490 * 185.57707 * 14 12 11 45 45 H 1.08999 * 109.46982 * 91.12416 * 18 17 15 46 46 H 1.09002 * 109.47234 * 211.11612 * 18 17 15 47 47 H 1.08994 * 109.47063 * 331.12241 * 18 17 15 48 48 H 1.09004 * 109.46728 * 209.99734 * 19 17 15 49 49 H 1.09001 * 109.47446 * 329.99254 * 19 17 15 50 50 H 0.97009 * 119.99841 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.40855 * 280.69802 * 28 11 10 52 52 H 1.09001 * 110.41156 * 158.25861 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3977 3.5451 1.2223 7 6 3.7184 4.9338 1.3248 8 1 4.6359 5.1512 0.7779 9 6 2.5566 5.7933 0.7850 10 6 2.0990 6.6487 1.9859 11 7 3.2862 6.7087 2.8769 12 6 2.8956 7.0447 4.2525 13 1 2.2568 6.2567 4.6516 14 6 2.1326 8.3708 4.2568 15 6 4.1295 7.1724 5.1082 16 8 5.2162 7.3122 4.5881 17 7 4.0256 7.1311 6.4512 18 6 2.7049 7.0667 7.0820 19 6 5.2332 7.1509 7.2804 20 6 5.5969 8.5769 7.6044 21 1 4.9895 9.3875 7.2298 22 6 6.7057 8.8469 8.3782 23 7 7.0233 10.0915 8.6605 24 14 7.7567 7.4448 9.0255 25 1 8.8259 7.1333 8.0432 26 1 8.3718 7.8428 10.3172 27 1 6.9078 6.2438 9.2308 28 6 3.8649 5.3424 2.8063 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8334 0.9767 0.8908 35 1 3.8340 0.9765 -0.8892 36 1 4.9083 3.0255 -0.0880 37 1 3.3498 3.4417 -0.8407 38 1 2.9043 6.4338 -0.0254 39 1 1.7424 5.1558 0.4402 40 1 1.8206 7.6495 1.6556 41 1 1.2624 6.1712 2.4960 42 1 2.7337 9.1373 3.7676 43 1 1.1913 8.2501 3.7206 44 1 1.9292 8.6698 5.2850 45 1 2.4224 6.0241 7.2280 46 1 2.7380 7.5725 8.0470 47 1 1.9716 7.5554 6.4406 48 1 5.0480 6.6041 8.2050 49 1 6.0538 6.6807 6.7384 50 1 7.8033 10.2813 9.2053 51 1 3.3061 4.6594 3.4461 52 1 4.9162 5.3595 3.0937 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157699326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:32 Heat of formation + Delta-G solvation = -107.312444 kcal Electronic energy + Delta-G solvation = -29109.609761 eV Core-core repulsion = 25110.220226 eV Total energy + Delta-G solvation = -3999.389535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.01264 -38.90422 -38.18176 -36.73432 -34.82223 -33.21356 -32.36439 -31.89831 -29.59437 -29.34364 -28.44341 -27.33291 -26.04480 -24.05397 -23.13309 -22.90368 -22.25529 -21.00235 -20.48247 -18.41459 -17.34071 -17.20635 -16.91414 -16.76046 -16.21552 -16.02996 -15.36042 -15.24457 -14.69620 -14.62570 -14.49709 -14.00283 -13.93251 -13.56684 -13.36958 -13.09543 -12.85067 -12.80867 -12.54915 -12.35202 -12.25701 -12.07687 -11.95543 -11.75593 -11.73691 -11.63168 -11.52935 -11.35868 -11.29134 -11.20591 -11.04808 -10.78253 -10.57497 -10.48770 -10.10834 -9.94420 -9.67633 -9.49190 -8.88427 -8.55001 -8.32686 -7.63258 -6.04559 -4.02625 3.27894 3.31603 3.33904 3.37557 3.39202 3.40400 3.72762 4.27769 4.42953 4.51551 4.63725 4.66211 4.70230 4.85684 4.91483 4.95169 4.99267 5.00646 5.07309 5.12173 5.19893 5.26289 5.29094 5.30232 5.33650 5.44468 5.52862 5.54858 5.57384 5.64497 5.76388 5.77245 5.80348 5.82745 5.86881 5.88480 5.95465 6.12756 6.15811 6.39657 6.70087 6.75589 6.86753 6.92540 7.03520 7.16771 7.40767 7.65491 8.31385 8.51829 8.98766 9.07995 9.55945 11.08914 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.002449 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.236839 B =11432.673430 C =12002.898371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.373 6.373 7 C 0.086 3.914 8 H 0.073 0.927 9 C -0.146 4.146 10 C 0.036 3.964 11 N -0.482 5.482 12 C 0.057 3.943 13 H 0.060 0.940 14 C -0.145 4.145 15 C 0.512 3.488 16 O -0.518 6.518 17 N -0.600 5.600 18 C 0.075 3.925 19 C 0.218 3.782 20 C -0.525 4.525 21 H 0.075 0.925 22 C 0.071 3.929 23 N -0.898 5.898 24 Si 0.876 3.124 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.266 1.266 28 C 0.039 3.961 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.029 0.971 49 H 0.034 0.966 50 H 0.264 0.736 51 H 0.052 0.948 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 -17.734 -17.747 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.291 6.291 7 C 0.028 3.972 8 H 0.091 0.909 9 C -0.184 4.184 10 C -0.092 4.092 11 N -0.208 5.208 12 C -0.055 4.055 13 H 0.077 0.923 14 C -0.203 4.203 15 C 0.297 3.703 16 O -0.393 6.393 17 N -0.333 5.333 18 C -0.069 4.069 19 C 0.097 3.903 20 C -0.563 4.563 21 H 0.093 0.907 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.703 3.297 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.191 1.191 28 C -0.089 4.089 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.047 0.953 49 H 0.052 0.948 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.318 -17.077 -17.917 28.107 hybrid contribution 0.309 -1.281 0.610 1.452 sum -13.009 -18.358 -17.307 28.386 Atomic orbital electron populations 1.21733 0.93715 1.02146 1.03247 1.22458 0.95738 0.83946 0.99899 1.87970 1.20584 1.26123 1.95378 1.22523 0.82121 0.95781 1.00794 1.22533 0.98316 0.92335 0.88119 1.87988 1.80648 1.22855 1.37634 1.22830 0.97018 0.80607 0.96776 0.90862 1.22841 0.98962 0.98410 0.98162 1.23078 0.92379 1.00249 0.93510 1.65253 1.23889 1.24894 1.06723 1.21812 0.95213 0.99098 0.89385 0.92256 1.21895 0.99388 0.95859 1.03138 1.20063 0.90013 0.77861 0.82388 1.90667 1.28544 1.47653 1.72395 1.47819 1.07809 1.72298 1.05413 1.21845 0.84864 1.00382 0.99797 1.19635 0.82899 0.98300 0.89458 1.21328 1.11862 0.91329 1.31805 0.90735 1.24869 0.96950 0.95498 0.95818 1.69905 1.27096 1.18145 1.38527 0.86851 0.81348 0.82880 0.78596 1.19951 1.21113 1.19126 1.23128 1.02363 0.88910 0.94491 0.91695 0.91925 0.91186 0.93628 0.93391 0.92384 0.91973 0.91654 0.92475 0.90668 0.90177 0.89789 0.93674 0.90759 0.91985 0.90742 0.93887 0.90526 0.91554 0.95316 0.94801 0.92636 0.92934 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.38 -3.96 10.31 -40.08 -0.41 -4.38 16 4 C 0.06 0.55 6.32 37.16 0.23 0.78 16 5 C 0.06 0.59 6.17 37.16 0.23 0.82 16 6 O -0.37 -4.64 9.91 -40.08 -0.40 -5.04 16 7 C 0.09 1.06 3.52 -25.35 -0.09 0.97 16 8 H 0.07 0.85 7.84 -51.93 -0.41 0.45 16 9 C -0.15 -1.59 6.80 -25.35 -0.17 -1.76 16 10 C 0.04 0.42 5.23 -2.18 -0.01 0.41 16 11 N -0.48 -7.42 4.84 -223.41 -1.08 -8.50 16 12 C 0.06 0.91 1.45 -68.87 -0.10 0.81 16 13 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 14 C -0.15 -2.01 8.46 37.16 0.31 -1.69 16 15 C 0.51 10.79 6.46 -10.99 -0.07 10.72 16 16 O -0.52 -13.17 15.20 5.56 0.08 -13.09 16 17 N -0.60 -12.70 2.86 -182.96 -0.52 -13.23 16 18 C 0.07 1.19 9.85 59.85 0.59 1.78 16 19 C 0.22 5.44 4.20 -5.20 -0.02 5.42 16 20 C -0.52 -15.34 9.94 -34.44 -0.34 -15.69 16 21 H 0.07 2.39 8.06 -52.49 -0.42 1.97 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.90 -28.08 13.96 55.43 0.77 -27.30 16 24 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 25 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 28 C 0.04 0.59 5.54 -2.18 -0.01 0.57 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.84 7.98 -51.93 -0.41 0.43 16 40 H 0.08 0.91 7.78 -51.93 -0.40 0.51 16 41 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.67 7.19 -51.93 -0.37 0.30 16 44 H 0.07 1.01 5.78 -51.93 -0.30 0.71 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 47 H 0.07 0.89 4.42 -51.93 -0.23 0.66 16 48 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 49 H 0.03 0.90 6.92 -51.93 -0.36 0.54 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 51 H 0.05 0.80 7.79 -51.93 -0.40 0.39 16 52 H 0.10 1.69 7.38 -51.93 -0.38 1.30 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -35.97 409.31 -8.50 -44.47 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -9.52 Total: -1.56 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 1.08 Total: 5.22 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.83 Total: -49.03 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.73 Total: -22.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.97 -8.50 -44.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157699326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.845 kcal (2) G-P(sol) polarization free energy of solvation -35.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds