Wall clock time and date at job start Tue Mar 31 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47219 * 2 1 4 4 C 1.46493 * 120.00066 * 89.99482 * 3 2 1 5 5 C 1.50706 * 109.47128 * 90.00240 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 C 1.34771 * 119.99478 * 269.99855 * 3 2 1 14 14 O 1.21285 * 119.99971 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00631 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47568 * 179.97438 * 15 13 3 17 17 C 1.46851 * 110.99991 * 66.04133 * 16 15 13 18 18 C 1.53032 * 109.52538 * 174.16129 * 17 16 15 19 19 C 1.53120 * 109.27866 * 59.17872 * 18 17 16 20 20 C 1.53120 * 109.16363 * 302.34988 * 19 18 17 21 21 H 1.09006 * 109.49646 * 297.71074 * 20 19 18 22 22 O 1.42897 * 109.50670 * 177.63237 * 20 19 18 23 23 C 1.42900 * 113.99996 * 89.99361 * 22 20 19 24 24 C 1.52999 * 109.47120 * 179.97438 * 23 22 20 25 25 O 1.42900 * 109.46586 * 65.00594 * 24 23 22 26 26 C 1.42907 * 113.99686 * 179.97438 * 25 24 23 27 27 C 1.46849 * 110.99986 * 301.83567 * 16 15 13 28 28 H 1.09003 * 109.47088 * 300.00462 * 1 2 3 29 29 H 1.08998 * 109.46930 * 60.00022 * 1 2 3 30 30 H 1.08994 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47190 * 239.99581 * 2 1 3 32 32 H 1.09002 * 109.46786 * 119.99480 * 2 1 3 33 33 H 1.09001 * 109.47786 * 330.00513 * 4 3 2 34 34 H 1.08998 * 109.47558 * 210.00376 * 4 3 2 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46570 * 299.99751 * 15 13 3 37 37 H 1.08998 * 109.47108 * 59.99583 * 15 13 3 38 38 H 1.08993 * 109.46356 * 294.18127 * 17 16 15 39 39 H 1.09005 * 109.46222 * 54.14661 * 17 16 15 40 40 H 1.09005 * 109.50642 * 179.12333 * 18 17 16 41 41 H 1.09003 * 109.50250 * 299.24296 * 18 17 16 42 42 H 1.09002 * 109.51745 * 62.25460 * 19 18 17 43 43 H 1.09002 * 109.52325 * 182.44124 * 19 18 17 44 44 H 1.09000 * 109.47572 * 300.00500 * 23 22 20 45 45 H 1.09005 * 109.46614 * 60.00318 * 23 22 20 46 46 H 1.08998 * 109.47111 * 185.00336 * 24 23 22 47 47 H 1.08997 * 109.47296 * 305.00639 * 24 23 22 48 48 H 1.08998 * 109.46981 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.46955 * 300.00044 * 26 25 24 50 50 H 1.08999 * 109.46932 * 59.99901 * 26 25 24 51 51 H 1.08994 * 109.46152 * 305.85239 * 27 16 15 52 52 H 1.08997 * 109.46396 * 65.82311 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3426 1.2303 1.0962 7 6 4.1509 2.3948 2.8748 8 7 5.3931 2.1886 3.2543 9 14 3.0170 3.4473 3.9217 10 1 2.3107 2.5870 4.9049 11 1 3.8166 4.4698 4.6432 12 1 2.0222 4.1217 3.0496 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1673 15 6 1.9913 1.3063 -2.4723 16 7 2.3091 2.2063 -3.5889 17 6 3.7453 2.5101 -3.6277 18 6 4.0615 3.3277 -4.8820 19 6 3.2470 4.6242 -4.8590 20 6 1.7576 4.2805 -4.7696 21 1 1.4604 3.7175 -5.6545 22 8 0.9937 5.4857 -4.6921 23 6 0.5980 6.0058 -5.9629 24 6 -0.2100 7.2890 -5.7596 25 8 0.6281 8.2934 -5.1844 26 6 -0.0328 9.5391 -4.9527 27 6 1.5082 3.4352 -3.5185 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5817 1.6878 2.0284 34 1 2.0955 3.1411 1.1384 35 1 5.7204 2.5827 4.0780 36 1 2.6213 0.4186 -2.5302 37 1 0.9433 1.0125 -2.5299 38 1 4.0194 3.0831 -2.7420 39 1 4.3129 1.5797 -3.6481 40 1 5.1249 3.5663 -4.9026 41 1 3.8004 2.7497 -5.7686 42 1 3.5359 5.2204 -3.9934 43 1 3.4363 5.1895 -5.7715 44 1 1.4846 6.2247 -6.5580 45 1 -0.0152 5.2691 -6.4820 46 1 -0.5868 7.6373 -6.7213 47 1 -1.0479 7.0889 -5.0919 48 1 0.6705 10.2478 -4.5156 49 1 -0.4057 9.9338 -5.8979 50 1 -0.8673 9.3859 -4.2685 51 1 0.4510 3.1768 -3.4596 52 1 1.7928 4.0040 -2.6333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179354751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:10 Heat of formation + Delta-G solvation = -115.585000 kcal Electronic energy + Delta-G solvation = -29782.766939 eV Core-core repulsion = 25783.018679 eV Total energy + Delta-G solvation = -3999.748260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09967 -38.80243 -37.90968 -36.63997 -35.28783 -33.08715 -32.55889 -30.96409 -30.34530 -29.15196 -28.46050 -26.54974 -26.43866 -23.44323 -22.99838 -22.79478 -22.51782 -21.69339 -19.76749 -18.37544 -17.12660 -16.92827 -16.85118 -16.58587 -16.05786 -15.72494 -15.43010 -15.07821 -14.91849 -14.72177 -14.49618 -14.11137 -13.81076 -13.55630 -13.47297 -13.17329 -13.03744 -12.66335 -12.59807 -12.39127 -12.28093 -12.08616 -11.84025 -11.76008 -11.58068 -11.37471 -11.32389 -10.97354 -10.84398 -10.74839 -10.67839 -10.57124 -10.46639 -10.35157 -10.06520 -9.88983 -9.71636 -9.49219 -9.39359 -8.59134 -7.80846 -7.67457 -6.08716 -4.07299 3.26894 3.28031 3.35477 3.40414 3.41589 3.56957 3.84021 4.27929 4.40152 4.77710 4.88989 4.93384 4.97092 5.02954 5.08622 5.11349 5.15236 5.20089 5.25150 5.26729 5.27781 5.34725 5.37147 5.48071 5.53287 5.55277 5.60470 5.65859 5.69974 5.73208 5.83170 5.97825 6.02096 6.08737 6.13916 6.19708 6.30118 6.39141 6.43916 6.56417 6.66930 6.92804 6.97862 7.09073 7.13490 7.34671 7.39340 7.61855 8.24873 8.47131 8.91885 8.97529 9.51970 11.04687 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003205 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.419800 B = 8734.825816 C = 9673.007316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.591 5.591 4 C 0.215 3.785 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.476 3.524 14 O -0.536 6.536 15 C 0.036 3.964 16 N -0.512 5.512 17 C 0.036 3.964 18 C -0.108 4.108 19 C -0.140 4.140 20 C 0.100 3.900 21 H 0.060 0.940 22 O -0.372 6.372 23 C 0.065 3.935 24 C 0.063 3.937 25 O -0.381 6.381 26 C 0.031 3.969 27 C 0.036 3.964 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.023 0.977 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.038 0.962 50 H 0.041 0.959 51 H 0.068 0.932 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 2.599 -19.647 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.094 3.906 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.701 3.299 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.262 3.738 14 O -0.414 6.414 15 C -0.095 4.095 16 N -0.236 5.236 17 C -0.092 4.092 18 C -0.146 4.146 19 C -0.178 4.178 20 C 0.042 3.958 21 H 0.078 0.922 22 O -0.291 6.291 23 C -0.012 4.012 24 C -0.014 4.014 25 O -0.300 6.300 26 C -0.066 4.066 27 C -0.091 4.091 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.056 0.944 50 H 0.060 0.940 51 H 0.086 0.914 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.155 3.077 -19.714 23.363 hybrid contribution -0.499 0.796 1.187 1.514 sum -12.653 3.873 -18.527 22.767 Atomic orbital electron populations 1.22227 0.96727 1.01617 1.02205 1.21458 0.93425 0.83882 1.03158 1.48105 1.63537 1.13313 1.07275 1.19636 0.97064 0.93631 0.80260 1.21309 0.95339 1.32635 1.07230 0.90866 1.24851 0.94996 0.95768 0.97371 1.69892 1.15141 1.44950 1.23655 0.86872 0.81316 0.80942 0.80776 1.20127 1.20941 1.18879 1.21667 0.78447 0.87479 0.86185 1.90580 1.45929 1.18147 1.86748 1.22309 1.03366 0.96759 0.87116 1.62346 1.06341 1.15087 1.39842 1.22325 0.87917 1.00061 0.98866 1.21477 0.99455 0.95551 0.98156 1.22053 0.95239 0.98027 1.02473 1.21978 0.90550 0.84856 0.98398 0.92162 1.87978 1.72470 1.41014 1.27610 1.22508 0.98336 0.93475 0.86908 1.22567 0.93553 0.87724 0.97529 1.87998 1.37136 1.21660 1.83189 1.22743 0.98207 0.86069 0.99533 1.22322 0.97272 0.90894 0.98653 0.92308 0.92945 0.91914 0.91286 0.89758 0.95878 0.94250 0.92578 0.88079 0.88338 0.91170 0.91169 0.91283 0.91729 0.90794 0.92261 0.92623 0.91978 0.92099 0.92416 0.89576 0.94366 0.94010 0.91392 0.89182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.59 -11.89 2.46 -175.06 -0.43 -12.32 16 4 C 0.21 5.26 4.23 -5.19 -0.02 5.24 16 5 C -0.53 -15.15 9.94 -34.44 -0.34 -15.50 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 9 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 13 C 0.48 9.41 7.09 -10.99 -0.08 9.33 16 14 O -0.54 -12.70 11.20 5.55 0.06 -12.64 16 15 C 0.04 0.53 4.41 -4.98 -0.02 0.51 16 16 N -0.51 -7.61 4.86 -236.12 -1.15 -8.76 16 17 C 0.04 0.55 5.09 -3.83 -0.02 0.53 16 18 C -0.11 -1.40 6.09 -26.65 -0.16 -1.56 16 19 C -0.14 -1.92 5.62 -26.61 -0.15 -2.07 16 20 C 0.10 1.38 2.77 -26.65 -0.07 1.31 16 21 H 0.06 0.74 7.79 -51.93 -0.40 0.33 16 22 O -0.37 -5.42 9.96 -40.09 -0.40 -5.82 16 23 C 0.06 0.69 6.13 37.16 0.23 0.92 16 24 C 0.06 0.62 6.32 37.16 0.23 0.86 16 25 O -0.38 -4.75 10.67 -40.09 -0.43 -5.17 16 26 C 0.03 0.27 11.01 101.05 1.11 1.38 16 27 C 0.04 0.57 4.63 -3.83 -0.02 0.55 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.61 7.22 -51.93 -0.37 0.24 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 34 H 0.04 1.06 6.46 -51.93 -0.34 0.72 16 35 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 36 H 0.10 1.33 7.32 -51.93 -0.38 0.95 16 37 H 0.10 1.22 7.18 -51.93 -0.37 0.85 16 38 H 0.07 1.36 6.00 -51.93 -0.31 1.05 16 39 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 44 H 0.06 0.57 7.93 -51.93 -0.41 0.16 16 45 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 50 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 52 H 0.09 1.79 5.36 -51.93 -0.28 1.51 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -35.01 403.58 -8.71 -43.73 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -9.50 Total: 1.44 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 0.95 Total: 3.39 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.80 Total: -48.18 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.76 Total: -23.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.01 -8.71 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179354751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.857 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds