Wall clock time and date at job start Tue Mar 31 2020 04:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46507 * 109.47219 * 2 1 4 4 C 1.46493 * 120.00066 * 89.99482 * 3 2 1 5 5 C 1.50706 * 109.47128 * 90.00240 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31514 * 120.00481 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99745 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47209 * 90.00365 * 9 7 5 11 11 H 1.48506 * 109.47294 * 210.00213 * 9 7 5 12 12 H 1.48501 * 109.47275 * 330.00116 * 9 7 5 13 13 C 1.34771 * 119.99478 * 269.99855 * 3 2 1 14 14 O 1.21285 * 119.99971 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00631 * 0.02562 * 13 3 2 16 16 N 1.46894 * 109.47568 * 179.97438 * 15 13 3 17 17 C 1.46851 * 110.99991 * 66.04133 * 16 15 13 18 18 C 1.53032 * 109.52538 * 174.16129 * 17 16 15 19 19 C 1.53120 * 109.27866 * 59.17872 * 18 17 16 20 20 C 1.53120 * 109.16363 * 302.34988 * 19 18 17 21 21 H 1.09006 * 109.49646 * 297.71074 * 20 19 18 22 22 O 1.42897 * 109.50670 * 177.63237 * 20 19 18 23 23 C 1.42900 * 113.99996 * 89.99361 * 22 20 19 24 24 C 1.52999 * 109.47120 * 179.97438 * 23 22 20 25 25 O 1.42900 * 109.46586 * 65.00594 * 24 23 22 26 26 C 1.42907 * 113.99686 * 179.97438 * 25 24 23 27 27 C 1.46849 * 110.99986 * 301.83567 * 16 15 13 28 28 H 1.09003 * 109.47088 * 300.00462 * 1 2 3 29 29 H 1.08998 * 109.46930 * 60.00022 * 1 2 3 30 30 H 1.08994 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47190 * 239.99581 * 2 1 3 32 32 H 1.09002 * 109.46786 * 119.99480 * 2 1 3 33 33 H 1.09001 * 109.47786 * 330.00513 * 4 3 2 34 34 H 1.08998 * 109.47558 * 210.00376 * 4 3 2 35 35 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 36 36 H 1.09005 * 109.46570 * 299.99751 * 15 13 3 37 37 H 1.08998 * 109.47108 * 59.99583 * 15 13 3 38 38 H 1.08993 * 109.46356 * 294.18127 * 17 16 15 39 39 H 1.09005 * 109.46222 * 54.14661 * 17 16 15 40 40 H 1.09005 * 109.50642 * 179.12333 * 18 17 16 41 41 H 1.09003 * 109.50250 * 299.24296 * 18 17 16 42 42 H 1.09002 * 109.51745 * 62.25460 * 19 18 17 43 43 H 1.09002 * 109.52325 * 182.44124 * 19 18 17 44 44 H 1.09000 * 109.47572 * 300.00500 * 23 22 20 45 45 H 1.09005 * 109.46614 * 60.00318 * 23 22 20 46 46 H 1.08998 * 109.47111 * 185.00336 * 24 23 22 47 47 H 1.08997 * 109.47296 * 305.00639 * 24 23 22 48 48 H 1.08998 * 109.46981 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.46955 * 300.00044 * 26 25 24 50 50 H 1.08999 * 109.46932 * 59.99901 * 26 25 24 51 51 H 1.08994 * 109.46152 * 305.85239 * 27 16 15 52 52 H 1.08997 * 109.46396 * 65.82311 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7038 6 1 4.3426 1.2303 1.0962 7 6 4.1509 2.3948 2.8748 8 7 5.3931 2.1886 3.2543 9 14 3.0170 3.4473 3.9217 10 1 2.3107 2.5870 4.9049 11 1 3.8166 4.4698 4.6432 12 1 2.0222 4.1217 3.0496 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1601 -1.1673 15 6 1.9913 1.3063 -2.4723 16 7 2.3091 2.2063 -3.5889 17 6 3.7453 2.5101 -3.6277 18 6 4.0615 3.3277 -4.8820 19 6 3.2470 4.6242 -4.8590 20 6 1.7576 4.2805 -4.7696 21 1 1.4604 3.7175 -5.6545 22 8 0.9937 5.4857 -4.6921 23 6 0.5980 6.0058 -5.9629 24 6 -0.2100 7.2890 -5.7596 25 8 0.6281 8.2934 -5.1844 26 6 -0.0328 9.5391 -4.9527 27 6 1.5082 3.4352 -3.5185 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5817 1.6878 2.0284 34 1 2.0955 3.1411 1.1384 35 1 5.7204 2.5827 4.0780 36 1 2.6213 0.4186 -2.5302 37 1 0.9433 1.0125 -2.5299 38 1 4.0194 3.0831 -2.7420 39 1 4.3129 1.5797 -3.6481 40 1 5.1249 3.5663 -4.9026 41 1 3.8004 2.7497 -5.7686 42 1 3.5359 5.2204 -3.9934 43 1 3.4363 5.1895 -5.7715 44 1 1.4846 6.2247 -6.5580 45 1 -0.0152 5.2691 -6.4820 46 1 -0.5868 7.6373 -6.7213 47 1 -1.0479 7.0889 -5.0919 48 1 0.6705 10.2478 -4.5156 49 1 -0.4057 9.9338 -5.8979 50 1 -0.8673 9.3859 -4.2685 51 1 0.4510 3.1768 -3.4596 52 1 1.7928 4.0040 -2.6333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179354751.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:09 Heat of formation + Delta-G solvation = -142.059855 kcal Electronic energy + Delta-G solvation = -29783.914974 eV Core-core repulsion = 25783.018679 eV Total energy + Delta-G solvation = -4000.896296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47838 -39.94097 -38.87335 -37.76851 -36.80761 -34.93254 -34.05988 -31.90448 -31.87068 -30.28706 -29.92394 -28.08417 -27.16084 -24.91854 -24.30960 -23.84973 -23.61655 -23.08966 -20.97893 -19.87601 -19.13506 -18.16291 -17.98160 -17.64150 -17.34365 -16.87748 -16.57156 -16.35410 -16.04885 -15.94429 -15.84784 -15.49666 -15.27190 -14.83584 -14.64943 -14.55325 -14.19110 -14.05828 -13.82260 -13.68363 -13.52870 -13.32960 -13.22670 -13.13033 -12.67599 -12.60041 -12.51663 -12.36275 -12.17964 -12.09316 -11.88758 -11.86691 -11.77701 -11.74063 -11.67535 -11.44319 -11.18991 -10.85710 -10.65185 -10.40204 -9.40836 -9.15646 -8.37749 -6.42042 1.26327 1.31509 1.41939 1.76997 2.26880 2.33320 2.41836 2.87002 2.96414 3.16350 3.69277 3.78919 3.89048 4.01050 4.08379 4.14088 4.18047 4.24176 4.29898 4.39266 4.43495 4.44065 4.47929 4.51262 4.54081 4.56780 4.61574 4.63796 4.69948 4.76823 4.81792 4.83234 4.87656 4.90777 4.94490 5.01127 5.02901 5.05126 5.13530 5.15911 5.38623 5.40449 5.45189 5.67084 5.86751 5.90532 6.21066 6.21771 6.39915 6.58919 6.72575 7.19261 7.43628 8.79240 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.010998 B = 0.003205 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.419800 B = 8734.825816 C = 9673.007316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.226 3.774 5 C -0.532 4.532 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.945 3.055 10 H -0.249 1.249 11 H -0.281 1.281 12 H -0.262 1.262 13 C 0.464 3.536 14 O -0.584 6.584 15 C 0.045 3.955 16 N -0.494 5.494 17 C 0.035 3.965 18 C -0.101 4.101 19 C -0.138 4.138 20 C 0.106 3.894 21 H 0.089 0.911 22 O -0.403 6.403 23 C 0.057 3.943 24 C 0.058 3.942 25 O -0.419 6.419 26 C 0.026 3.974 27 C 0.039 3.961 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.012 0.988 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.020 0.980 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.033 0.967 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.061 0.939 50 H 0.043 0.957 51 H 0.078 0.922 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.271 1.505 -21.887 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.331 5.331 4 C 0.104 3.896 5 C -0.570 4.570 6 H 0.047 0.953 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.768 3.232 10 H -0.173 1.173 11 H -0.207 1.207 12 H -0.186 1.186 13 C 0.253 3.747 14 O -0.466 6.466 15 C -0.087 4.087 16 N -0.217 5.217 17 C -0.093 4.093 18 C -0.138 4.138 19 C -0.176 4.176 20 C 0.048 3.952 21 H 0.106 0.894 22 O -0.322 6.322 23 C -0.019 4.019 24 C -0.018 4.018 25 O -0.339 6.339 26 C -0.070 4.070 27 C -0.089 4.089 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.038 0.962 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.079 0.921 50 H 0.062 0.938 51 H 0.097 0.903 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.930 1.940 -21.977 26.639 hybrid contribution 0.414 1.129 1.828 2.188 sum -14.516 3.069 -20.149 25.022 Atomic orbital electron populations 1.22154 0.93970 1.03702 1.01970 1.21799 0.95619 0.81038 1.04073 1.48252 1.63781 1.15209 1.05892 1.19213 0.94622 0.92809 0.83005 1.21539 0.97031 1.31749 1.06723 0.95266 1.25815 0.96665 0.97157 0.98968 1.70041 1.17297 1.46528 1.24597 0.85752 0.79157 0.79213 0.79079 1.17286 1.20692 1.18625 1.22742 0.77187 0.87146 0.87645 1.90595 1.47812 1.20579 1.87578 1.22516 1.05883 0.96578 0.83695 1.62466 1.05734 1.14523 1.38982 1.22317 0.88538 1.00264 0.98155 1.21458 0.99770 0.94897 0.97714 1.22029 0.95812 0.98223 1.01527 1.21924 0.90283 0.84876 0.98133 0.89354 1.87956 1.72640 1.41338 1.30270 1.22811 0.99093 0.94452 0.85574 1.22758 0.92979 0.87113 0.98920 1.87944 1.38967 1.23178 1.83787 1.22889 0.98195 0.85043 1.00873 1.22236 0.97744 0.90952 0.97946 0.93869 0.91882 0.88577 0.88144 0.91171 0.93974 0.96986 0.92274 0.85789 0.84911 0.96203 0.89943 0.90661 0.88928 0.94834 0.90298 0.92364 0.89072 0.88854 0.92743 0.89490 0.92083 0.93790 0.90313 0.93968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 10.24 71.98 0.74 -2.71 16 2 C 0.10 2.77 5.93 86.38 0.51 3.28 16 3 N -0.60 -24.37 2.46 -826.15 -2.03 -26.40 16 4 C 0.23 11.37 4.23 85.64 0.36 11.74 16 5 C -0.53 -31.99 9.94 25.60 0.25 -31.74 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.72 5.47 84.65 0.46 1.19 16 8 N -0.94 -60.81 13.96 21.45 0.30 -60.51 16 9 Si 0.95 46.01 27.47 68.60 1.88 47.89 16 10 H -0.25 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.26 -12.56 6.53 99.48 0.65 -11.91 16 13 C 0.46 18.68 7.09 87.66 0.62 19.31 16 14 O -0.58 -29.47 11.20 -3.04 -0.03 -29.51 16 15 C 0.04 1.22 4.41 85.56 0.38 1.60 16 16 N -0.49 -14.01 4.86 -900.95 -4.38 -18.39 16 17 C 0.04 1.09 5.09 86.32 0.44 1.53 16 18 C -0.10 -2.48 6.09 30.65 0.19 -2.29 16 19 C -0.14 -3.77 5.62 30.67 0.17 -3.60 16 20 C 0.11 2.80 2.77 30.65 0.08 2.89 16 21 H 0.09 1.86 7.79 -2.38 -0.02 1.84 16 22 O -0.40 -11.56 9.96 -144.34 -1.44 -13.00 16 23 C 0.06 1.10 6.13 71.98 0.44 1.54 16 24 C 0.06 1.06 6.32 71.98 0.45 1.52 16 25 O -0.42 -10.28 10.67 -144.34 -1.54 -11.82 16 26 C 0.03 0.44 11.01 113.37 1.25 1.69 16 27 C 0.04 1.23 4.63 86.33 0.40 1.63 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.24 7.22 -2.39 -0.02 1.22 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 32 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.04 1.95 7.51 -2.39 -0.02 1.93 16 34 H 0.01 0.67 6.46 -2.39 -0.02 0.66 16 35 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 36 H 0.12 2.88 7.32 -2.38 -0.02 2.87 16 37 H 0.13 2.78 7.18 -2.39 -0.02 2.76 16 38 H 0.02 0.82 6.00 -2.39 -0.01 0.81 16 39 H 0.08 2.30 8.06 -2.38 -0.02 2.28 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.08 1.82 7.94 -2.39 -0.02 1.80 16 44 H 0.06 1.08 7.93 -2.39 -0.02 1.06 16 45 H 0.09 1.21 8.09 -2.38 -0.02 1.19 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.08 2.24 8.12 -2.39 -0.02 2.22 16 52 H 0.04 1.78 5.36 -2.39 -0.01 1.77 16 Total: -1.00 -83.64 403.58 0.34 -83.30 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.81 Total: 20.88 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.76 Total: 7.56 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -6.11 Total: -105.30 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -3.01 Total: -54.33 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.89 kcal Total: -83.64 0.34 -83.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179354751.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.758 kcal (2) G-P(sol) polarization free energy of solvation -83.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds