Wall clock time and date at job start Tue Mar 31 2020 04:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.46957 * 2 1 4 4 C 1.46509 * 119.99805 * 269.99699 * 3 2 1 5 5 C 1.50703 * 109.46631 * 90.00133 * 4 3 2 6 6 H 1.07999 * 120.00611 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99380 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00542 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99619 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47214 * 90.00014 * 9 7 5 11 11 H 1.48498 * 109.47157 * 209.99531 * 9 7 5 12 12 H 1.48499 * 109.47351 * 329.99700 * 9 7 5 13 13 C 1.34765 * 120.00262 * 90.00105 * 3 2 1 14 14 O 1.21288 * 119.99975 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00273 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47548 * 173.80105 * 15 13 3 17 17 C 1.46845 * 111.00323 * 169.41663 * 16 15 13 18 18 C 1.53031 * 109.52569 * 185.84005 * 17 16 15 19 19 C 1.53120 * 109.27844 * 300.81686 * 18 17 16 20 20 C 1.53124 * 109.15833 * 57.65875 * 19 18 17 21 21 H 1.08994 * 109.50314 * 62.28091 * 20 19 18 22 22 O 1.42900 * 109.53392 * 182.38633 * 20 19 18 23 23 C 1.42899 * 113.99689 * 269.81794 * 22 20 19 24 24 C 1.52994 * 109.47057 * 180.02562 * 23 22 20 25 25 O 1.42898 * 109.47313 * 65.00175 * 24 23 22 26 26 C 1.42904 * 114.00339 * 180.02562 * 25 24 23 27 27 C 1.46845 * 110.99982 * 293.62575 * 16 15 13 28 28 H 1.08994 * 109.46936 * 300.00294 * 1 2 3 29 29 H 1.09000 * 109.46971 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47040 * 60.00505 * 1 2 3 31 31 H 1.08996 * 109.47040 * 119.99495 * 2 1 3 32 32 H 1.09002 * 109.47232 * 239.99679 * 2 1 3 33 33 H 1.08999 * 109.47186 * 210.00001 * 4 3 2 34 34 H 1.09001 * 109.46845 * 330.00572 * 4 3 2 35 35 H 0.96997 * 120.00176 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47386 * 293.80649 * 15 13 3 37 37 H 1.09005 * 109.46961 * 53.80373 * 15 13 3 38 38 H 1.08999 * 109.46335 * 305.85891 * 17 16 15 39 39 H 1.09001 * 109.46268 * 65.82299 * 17 16 15 40 40 H 1.09006 * 109.50342 * 180.87874 * 18 17 16 41 41 H 1.08995 * 109.50504 * 60.76195 * 18 17 16 42 42 H 1.08997 * 109.52320 * 297.75167 * 19 18 17 43 43 H 1.09001 * 109.52404 * 177.55819 * 19 18 17 44 44 H 1.09000 * 109.47084 * 300.00310 * 23 22 20 45 45 H 1.09006 * 109.47391 * 60.00070 * 23 22 20 46 46 H 1.09006 * 109.47290 * 184.99743 * 24 23 22 47 47 H 1.08998 * 109.47513 * 305.00034 * 24 23 22 48 48 H 1.08997 * 109.47010 * 299.99690 * 26 25 24 49 49 H 1.08991 * 109.47026 * 59.99591 * 26 25 24 50 50 H 1.08995 * 109.46973 * 180.02562 * 26 25 24 51 51 H 1.08999 * 109.46587 * 294.17447 * 27 16 15 52 52 H 1.08997 * 109.46321 * 54.15325 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 1.0066 2.7822 -1.7038 6 1 0.1158 2.7253 -1.0959 7 6 0.9949 3.5047 -2.8781 8 7 2.0798 3.5744 -3.6183 9 14 -0.5616 4.3858 -3.4170 10 1 -0.5690 5.7626 -2.8604 11 1 -0.6052 4.4512 -4.8999 12 1 -1.7479 3.6442 -2.9192 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1599 1.1670 15 6 1.9913 1.3065 2.4722 16 7 2.4483 2.1499 3.5847 17 6 1.9970 1.6107 4.8739 18 6 2.3642 2.5872 5.9935 19 6 3.8816 2.7922 6.0080 20 6 4.3320 3.3083 4.6385 21 1 3.8682 4.2752 4.4435 22 8 5.7539 3.4498 4.6253 23 6 6.2137 4.7375 5.0402 24 6 7.7423 4.7749 4.9866 25 8 8.1749 4.6376 3.6316 26 6 9.5946 4.6594 3.4696 27 6 3.9076 2.3109 3.5581 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.0644 2.7985 -1.1385 34 1 2.5506 1.3451 -2.0284 35 1 2.0714 4.0824 -4.4445 36 1 0.9245 1.1103 2.5794 37 1 2.5372 0.3630 2.4836 38 1 0.9159 1.4735 4.8517 39 1 2.4810 0.6511 5.0556 40 1 2.0430 2.1793 6.9520 41 1 1.8695 3.5427 5.8198 42 1 4.3753 1.8439 6.2203 43 1 4.1435 3.5202 6.7757 44 1 5.8084 5.4998 4.3748 45 1 5.8808 4.9311 6.0600 46 1 8.0968 5.7249 5.3866 47 1 8.1469 3.9564 5.5819 48 1 9.9878 5.6067 3.8383 49 1 10.0372 3.8382 4.0333 50 1 9.8414 4.5503 2.4136 51 1 4.3827 1.3480 3.7461 52 1 4.2143 2.6824 2.5804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179354758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:12 Heat of formation + Delta-G solvation = -120.319410 kcal Electronic energy + Delta-G solvation = -29533.360091 eV Core-core repulsion = 25533.406532 eV Total energy + Delta-G solvation = -3999.953559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.78557 -38.73663 -37.94864 -36.68108 -35.14955 -33.13256 -32.56683 -30.99667 -29.91882 -29.15280 -28.24137 -26.40671 -26.30996 -23.59488 -22.90450 -22.69535 -22.54491 -21.93405 -19.85496 -18.23725 -17.14632 -16.75298 -16.52379 -16.43334 -15.93207 -15.68092 -15.28521 -15.09433 -14.90813 -14.88158 -14.30265 -14.19290 -13.85470 -13.35490 -13.28863 -13.11339 -13.06127 -12.74980 -12.61128 -12.48547 -12.14911 -11.99420 -11.71956 -11.58198 -11.41047 -11.33012 -11.14953 -11.09179 -10.90205 -10.79900 -10.68425 -10.64847 -10.52356 -10.43150 -9.98368 -9.82517 -9.51792 -9.42536 -8.79701 -8.36192 -8.09834 -7.55994 -5.97165 -4.00808 3.34432 3.35585 3.41673 3.43093 3.54969 3.64068 3.85855 4.36519 4.51863 4.72604 4.82688 4.86564 4.88212 5.02452 5.06443 5.15185 5.18591 5.22638 5.28846 5.30146 5.35356 5.36946 5.41195 5.48304 5.52095 5.56524 5.58389 5.62451 5.68684 5.69529 5.79511 5.84705 5.90770 5.92705 5.98741 6.15902 6.19462 6.35024 6.36743 6.80493 6.98598 7.01944 7.11446 7.21884 7.35605 7.53587 7.65782 7.99972 8.32060 8.52657 8.99360 9.22966 9.63760 11.10999 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003222 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.091385 B = 8688.707102 C =10319.068842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.505 3.495 14 O -0.521 6.521 15 C 0.040 3.960 16 N -0.517 5.517 17 C 0.054 3.946 18 C -0.113 4.113 19 C -0.141 4.141 20 C 0.097 3.903 21 H 0.072 0.928 22 O -0.374 6.374 23 C 0.064 3.936 24 C 0.064 3.936 25 O -0.379 6.379 26 C 0.031 3.969 27 C 0.060 3.940 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.039 0.961 50 H 0.087 0.913 51 H 0.033 0.967 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 -4.923 20.814 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.334 5.334 4 C 0.128 3.872 5 C -0.559 4.559 6 H 0.077 0.923 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.090 4.090 16 N -0.243 5.243 17 C -0.074 4.074 18 C -0.151 4.151 19 C -0.179 4.179 20 C 0.039 3.961 21 H 0.091 0.909 22 O -0.293 6.293 23 C -0.013 4.013 24 C -0.013 4.013 25 O -0.297 6.297 26 C -0.065 4.065 27 C -0.067 4.067 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.105 0.895 51 H 0.051 0.949 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.888 -3.933 20.352 21.843 hybrid contribution -0.522 -0.132 0.005 0.539 sum 6.366 -4.066 20.357 21.713 Atomic orbital electron populations 1.22230 0.96387 1.00772 1.03393 1.21381 0.94526 0.83922 1.01504 1.48281 1.64293 1.13122 1.07736 1.19261 0.97478 0.92413 0.78003 1.21452 0.97540 1.30898 1.05994 0.92346 1.24935 0.96383 0.96333 0.96531 1.69933 1.27457 1.41747 1.14371 0.86540 0.83349 0.80299 0.77458 1.20611 1.21267 1.19987 1.20098 0.79108 0.87041 0.84667 1.90667 1.45027 1.17174 1.86772 1.22062 1.01914 0.94365 0.90706 1.61382 1.12021 1.49405 1.01487 1.22144 1.00454 0.95812 0.89018 1.21514 0.95369 1.00587 0.97598 1.22111 0.96324 1.01780 0.97704 1.21989 0.80576 0.99704 0.93866 0.90945 1.87912 1.21319 1.31814 1.88215 1.22528 0.93089 0.86658 0.99010 1.22549 0.93959 1.00196 0.84571 1.88042 1.21554 1.94488 1.25656 1.22744 0.81531 0.99555 1.02713 1.22069 0.86459 0.97359 1.00834 0.93321 0.92927 0.90529 0.92263 0.90770 0.93936 0.95196 0.92832 0.88233 0.92744 0.90493 0.94950 0.91228 0.90785 0.91561 0.91968 0.92073 0.92086 0.92055 0.92659 0.94337 0.94205 0.89460 0.94911 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 1.80 6.00 -4.04 -0.02 1.78 16 3 N -0.60 -12.88 2.46 -175.05 -0.43 -13.31 16 4 C 0.25 6.56 5.20 -5.19 -0.03 6.54 16 5 C -0.52 -14.82 8.92 -34.44 -0.31 -15.12 16 6 H 0.06 1.66 7.42 -52.49 -0.39 1.27 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.51 10.76 7.20 -10.99 -0.08 10.68 16 14 O -0.52 -13.43 14.28 5.55 0.08 -13.36 16 15 C 0.04 0.64 4.18 -4.98 -0.02 0.61 16 16 N -0.52 -7.98 4.35 -236.12 -1.03 -9.00 16 17 C 0.05 0.62 5.46 -3.84 -0.02 0.60 16 18 C -0.11 -1.15 6.09 -26.65 -0.16 -1.31 16 19 C -0.14 -1.54 5.62 -26.61 -0.15 -1.69 16 20 C 0.10 1.36 2.77 -26.65 -0.07 1.29 16 21 H 0.07 1.09 7.79 -51.93 -0.40 0.69 16 22 O -0.37 -5.47 9.96 -40.09 -0.40 -5.87 16 23 C 0.06 0.74 6.13 37.15 0.23 0.97 16 24 C 0.06 0.67 6.32 37.15 0.23 0.91 16 25 O -0.38 -5.13 10.67 -40.09 -0.43 -5.56 16 26 C 0.03 0.30 11.01 101.05 1.11 1.41 16 27 C 0.06 0.98 4.77 -3.83 -0.02 0.96 16 28 H 0.05 0.73 7.41 -51.93 -0.38 0.34 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.42 7.26 -51.93 -0.38 1.04 16 31 H 0.06 0.77 6.27 -51.93 -0.33 0.45 16 32 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 34 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.10 1.40 7.25 -51.93 -0.38 1.02 16 37 H 0.05 0.75 7.04 -51.93 -0.37 0.38 16 38 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.59 7.95 -51.93 -0.41 0.17 16 44 H 0.06 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.10 2.02 6.05 -51.93 -0.31 1.70 16 LS Contribution 410.82 15.07 6.19 6.19 Total: -1.00 -35.01 410.82 -8.91 -43.92 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -9.59 Total: -0.94 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 0.97 Total: 7.03 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.72 Total: -48.60 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.75 Total: -24.78 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.01 -8.91 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179354758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.400 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds