Wall clock time and date at job start Tue Mar 31 2020 04:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99715 * 2 1 4 4 C 1.53009 * 109.47154 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46739 * 65.00264 * 4 3 2 6 6 C 1.42901 * 113.99709 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.50226 * 329.92288 * 6 5 4 8 8 C 1.53115 * 109.50450 * 89.99998 * 6 5 4 9 9 C 1.53126 * 109.16028 * 177.59375 * 8 6 5 10 10 C 1.53037 * 109.27722 * 302.34705 * 9 8 6 11 11 N 1.46842 * 109.52223 * 59.17640 * 10 9 8 12 12 C 1.46904 * 110.99705 * 174.15930 * 11 10 9 13 13 C 1.53001 * 109.47206 * 66.04727 * 12 11 10 14 14 C 1.50699 * 109.47045 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00406 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99563 * 179.97438 * 14 13 12 17 17 C 1.46499 * 120.00229 * 0.02562 * 16 14 13 18 18 C 1.46499 * 119.99546 * 180.02562 * 16 14 13 19 19 C 1.50703 * 109.47349 * 270.00192 * 18 16 14 20 20 H 1.08007 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.37872 * 120.00296 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00149 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00169 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47194 * 119.99521 * 23 21 19 26 26 H 1.48495 * 109.47123 * 239.99959 * 23 21 19 27 27 C 1.46838 * 111.20151 * 298.25826 * 11 10 9 28 28 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47116 * 299.99720 * 1 2 3 30 30 H 1.09003 * 109.47258 * 59.99879 * 1 2 3 31 31 H 1.09001 * 109.46870 * 60.00710 * 3 2 1 32 32 H 1.08995 * 109.47808 * 300.00079 * 3 2 1 33 33 H 1.09002 * 109.46688 * 305.00456 * 4 3 2 34 34 H 1.08991 * 109.47109 * 185.00414 * 4 3 2 35 35 H 1.09000 * 109.52203 * 57.69093 * 8 6 5 36 36 H 1.09001 * 109.52443 * 297.49982 * 8 6 5 37 37 H 1.09003 * 109.49989 * 182.40388 * 9 8 6 38 38 H 1.09000 * 109.50022 * 62.28974 * 9 8 6 39 39 H 1.08995 * 109.45847 * 299.16155 * 10 9 8 40 40 H 1.09001 * 109.44889 * 179.19136 * 10 9 8 41 41 H 1.09004 * 109.47048 * 306.04851 * 12 11 10 42 42 H 1.09002 * 109.47315 * 186.04958 * 12 11 10 43 43 H 1.09004 * 109.47016 * 60.00104 * 13 12 11 44 44 H 1.09002 * 109.47172 * 300.00318 * 13 12 11 45 45 H 1.09002 * 109.47391 * 89.99442 * 17 16 14 46 46 H 1.09001 * 109.46813 * 329.99499 * 17 16 14 47 47 H 1.09004 * 109.47041 * 209.99626 * 17 16 14 48 48 H 1.08993 * 109.47560 * 30.00104 * 18 16 14 49 49 H 1.09000 * 109.47209 * 150.00790 * 18 16 14 50 50 H 0.96993 * 120.00222 * 180.02562 * 22 21 19 51 51 H 1.09005 * 109.46191 * 181.76102 * 27 11 10 52 52 H 1.09001 * 109.46288 * 301.72383 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 8 3.9658 0.5794 -1.2202 6 6 5.3821 0.4189 -1.3216 7 1 5.8791 1.2111 -0.7617 8 6 5.7848 -0.9424 -0.7480 9 6 7.2951 -1.1315 -0.9152 10 6 7.6580 -1.0140 -2.3972 11 7 7.2532 0.3056 -2.8984 12 6 7.7097 0.5065 -4.2802 13 6 6.9834 -0.4725 -5.2048 14 6 7.4512 -0.2659 -6.6223 15 8 8.2840 0.5807 -6.8688 16 7 6.9449 -1.0226 -7.6161 17 6 5.9394 -2.0456 -7.3183 18 6 7.4001 -0.8221 -8.9940 19 6 6.5243 0.2022 -9.6685 20 1 5.7103 0.6586 -9.1248 21 6 6.7622 0.5567 -10.9794 22 7 7.7538 0.0014 -11.6413 23 14 5.6771 1.8270 -11.8151 24 1 4.6413 2.2979 -10.8608 25 1 6.5079 2.9781 -12.2508 26 1 5.0197 1.2152 -12.9978 27 6 5.8005 0.4914 -2.7918 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0903 35 1 5.2574 -1.7330 -1.2818 36 1 5.5276 -0.9822 0.3105 37 1 7.5814 -2.1168 -0.5473 38 1 7.8227 -0.3637 -0.3493 39 1 7.1407 -1.7907 -2.9604 40 1 8.7346 -1.1338 -2.5179 41 1 8.7840 0.3310 -4.3371 42 1 7.4917 1.5286 -4.5899 43 1 5.9091 -0.2970 -5.1479 44 1 7.2014 -1.4946 -4.8951 45 1 4.9436 -1.6082 -7.3903 46 1 6.0967 -2.4267 -6.3092 47 1 6.0299 -2.8631 -8.0337 48 1 8.4318 -0.4707 -8.9884 49 1 7.3404 -1.7652 -9.5373 50 1 7.9214 0.2511 -12.5634 51 1 5.5281 1.4650 -3.1994 52 1 5.2920 -0.2923 -3.3533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179383372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:34 Heat of formation + Delta-G solvation = -126.736984 kcal Electronic energy + Delta-G solvation = -28827.493917 eV Core-core repulsion = 24827.262071 eV Total energy + Delta-G solvation = -4000.231846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.94903 -38.93707 -38.26834 -37.09209 -34.82886 -33.80923 -32.58566 -31.22251 -30.06155 -29.28225 -27.67237 -26.58677 -25.89433 -25.06212 -23.11990 -23.08245 -22.64359 -21.60099 -19.78440 -18.27195 -17.38936 -17.01173 -16.60136 -16.52524 -15.97351 -15.71057 -15.50398 -15.27085 -15.17848 -15.05319 -14.75858 -14.39412 -13.83077 -13.75109 -13.59296 -13.37947 -13.02254 -12.77732 -12.54677 -12.46855 -12.16956 -12.07836 -11.96034 -11.92125 -11.73539 -11.52859 -11.32864 -11.18624 -11.05010 -10.92877 -10.85114 -10.74536 -10.57788 -10.54785 -10.14005 -10.03997 -9.65751 -9.59521 -8.90956 -8.42906 -8.35890 -7.62216 -6.02897 -4.07337 3.17074 3.30850 3.37748 3.41012 3.41668 3.47118 3.92960 4.12373 4.46518 4.56180 4.58868 4.70357 4.77755 4.80323 4.91835 4.98271 5.00249 5.05147 5.12129 5.18633 5.20126 5.20692 5.23441 5.31199 5.32545 5.35106 5.40667 5.48819 5.55072 5.61007 5.65572 5.73499 5.79052 5.83131 5.92588 5.95903 6.05656 6.11150 6.20036 6.32446 6.76635 6.90548 6.96625 7.07765 7.12287 7.45376 7.56417 7.93594 8.25286 8.43544 8.92055 9.11693 9.57722 11.05294 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002488 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.496343 B =11251.263887 C =12691.123027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.062 3.938 4 C 0.065 3.935 5 O -0.374 6.374 6 C 0.094 3.906 7 H 0.068 0.932 8 C -0.141 4.141 9 C -0.114 4.114 10 C 0.047 3.953 11 N -0.532 5.532 12 C 0.075 3.925 13 C -0.179 4.179 14 C 0.508 3.492 15 O -0.543 6.543 16 N -0.604 5.604 17 C 0.087 3.913 18 C 0.244 3.756 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.060 3.940 22 N -0.896 5.896 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.284 1.284 27 C 0.055 3.945 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.067 0.933 48 H 0.044 0.956 49 H 0.031 0.969 50 H 0.262 0.738 51 H 0.082 0.918 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.305 -2.441 27.258 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.015 4.015 4 C -0.012 4.012 5 O -0.292 6.292 6 C 0.036 3.964 7 H 0.086 0.914 8 C -0.179 4.179 9 C -0.152 4.152 10 C -0.081 4.081 11 N -0.256 5.256 12 C -0.053 4.053 13 C -0.220 4.220 14 C 0.294 3.706 15 O -0.421 6.421 16 N -0.336 5.336 17 C -0.057 4.057 18 C 0.125 3.875 19 C -0.563 4.563 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.535 5.535 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.210 1.210 27 C -0.073 4.073 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.100 0.900 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.575 -1.872 27.089 28.476 hybrid contribution -1.246 0.251 -0.927 1.573 sum -9.822 -1.620 26.162 27.992 Atomic orbital electron populations 1.22749 0.81083 1.02877 0.99875 1.87963 1.19571 1.27305 1.95371 1.22580 0.92481 0.85520 1.00882 1.22533 0.93198 0.97392 0.88034 1.87952 1.21922 1.81721 1.37646 1.22034 0.80872 0.96749 0.96715 0.91432 1.22077 0.96405 0.98182 1.01212 1.21544 0.95342 1.02008 0.96273 1.22190 1.00989 0.89819 0.95135 1.62147 1.12389 1.29770 1.21313 1.21981 1.00005 0.99644 0.83656 1.22387 1.02621 1.02040 0.94990 1.20190 0.82326 0.81794 0.86329 1.90667 1.33459 1.33711 1.84214 1.48182 1.40437 1.35035 1.09986 1.21602 0.92306 0.91767 1.00063 1.19304 0.96651 0.96820 0.74720 1.21464 1.14774 1.23245 0.96781 0.92497 1.24944 0.95498 0.96530 0.97243 1.69939 1.29558 1.43150 1.10830 0.86437 0.80393 0.81348 0.79221 1.19811 1.20852 1.20971 1.22038 0.88021 1.02497 0.94791 0.89580 0.94263 0.93925 0.91946 0.92259 0.92559 0.91714 0.91220 0.91847 0.91176 0.91096 0.94325 0.90298 0.89581 0.89523 0.89389 0.89723 0.93269 0.92794 0.91429 0.93838 0.95092 0.92787 0.89974 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.87 10.67 -40.08 -0.43 -4.29 16 3 C 0.06 0.49 6.32 37.16 0.23 0.73 16 4 C 0.07 0.54 6.13 37.16 0.23 0.77 16 5 O -0.37 -4.20 9.96 -40.08 -0.40 -4.60 16 6 C 0.09 0.96 2.77 -26.65 -0.07 0.89 16 7 H 0.07 0.65 7.79 -51.93 -0.40 0.25 16 8 C -0.14 -1.29 5.62 -26.61 -0.15 -1.44 16 9 C -0.11 -0.96 6.09 -26.65 -0.16 -1.13 16 10 C 0.05 0.47 5.05 -3.84 -0.02 0.45 16 11 N -0.53 -6.28 4.86 -234.68 -1.14 -7.42 16 12 C 0.08 1.06 4.65 -3.82 -0.02 1.04 16 13 C -0.18 -2.67 3.55 -27.88 -0.10 -2.77 16 14 C 0.51 10.64 7.67 -10.98 -0.08 10.56 16 15 O -0.54 -13.68 15.56 5.56 0.09 -13.59 16 16 N -0.60 -13.13 2.86 -182.95 -0.52 -13.65 16 17 C 0.09 1.43 10.29 59.85 0.62 2.04 16 18 C 0.24 6.54 5.20 -5.19 -0.03 6.51 16 19 C -0.52 -15.19 9.39 -34.44 -0.32 -15.51 16 20 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 23 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 24 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.05 0.63 4.49 -3.84 -0.02 0.61 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 7.94 -51.93 -0.41 0.03 16 34 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.53 7.94 -51.93 -0.41 0.12 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.40 6.75 -51.93 -0.35 0.05 16 40 H 0.08 0.77 8.06 -51.93 -0.42 0.35 16 41 H 0.09 1.27 8.02 -51.93 -0.42 0.85 16 42 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 43 H 0.09 1.25 6.47 -51.93 -0.34 0.92 16 44 H 0.08 1.10 5.94 -51.93 -0.31 0.79 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.70 6.44 -51.93 -0.33 0.37 16 47 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 48 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 49 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 52 H 0.05 0.59 6.61 -51.93 -0.34 0.24 16 LS Contribution 410.60 15.07 6.19 6.19 Total: -1.00 -34.65 410.60 -8.93 -43.58 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -9.55 Total: -2.86 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 1.12 Total: 5.72 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.93 Total: -47.34 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.74 Total: -22.49 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.65 -8.93 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179383372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.155 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds