Wall clock time and date at job start Tue Mar 31 2020 04:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99715 * 2 1 4 4 C 1.53009 * 109.47154 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46739 * 65.00264 * 4 3 2 6 6 C 1.42901 * 113.99709 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.50226 * 329.92288 * 6 5 4 8 8 C 1.53115 * 109.50450 * 89.99998 * 6 5 4 9 9 C 1.53126 * 109.16028 * 177.59375 * 8 6 5 10 10 C 1.53037 * 109.27722 * 302.34705 * 9 8 6 11 11 N 1.46842 * 109.52223 * 59.17640 * 10 9 8 12 12 C 1.46904 * 110.99705 * 174.15930 * 11 10 9 13 13 C 1.53001 * 109.47206 * 66.04727 * 12 11 10 14 14 C 1.50699 * 109.47045 * 179.97438 * 13 12 11 15 15 O 1.21279 * 120.00406 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99563 * 179.97438 * 14 13 12 17 17 C 1.46499 * 120.00229 * 0.02562 * 16 14 13 18 18 C 1.46499 * 119.99546 * 180.02562 * 16 14 13 19 19 C 1.50703 * 109.47349 * 270.00192 * 18 16 14 20 20 H 1.08007 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.37872 * 120.00296 * 180.02562 * 19 18 16 22 22 N 1.31512 * 120.00149 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00169 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46982 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47194 * 119.99521 * 23 21 19 26 26 H 1.48495 * 109.47123 * 239.99959 * 23 21 19 27 27 C 1.46838 * 111.20151 * 298.25826 * 11 10 9 28 28 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47116 * 299.99720 * 1 2 3 30 30 H 1.09003 * 109.47258 * 59.99879 * 1 2 3 31 31 H 1.09001 * 109.46870 * 60.00710 * 3 2 1 32 32 H 1.08995 * 109.47808 * 300.00079 * 3 2 1 33 33 H 1.09002 * 109.46688 * 305.00456 * 4 3 2 34 34 H 1.08991 * 109.47109 * 185.00414 * 4 3 2 35 35 H 1.09000 * 109.52203 * 57.69093 * 8 6 5 36 36 H 1.09001 * 109.52443 * 297.49982 * 8 6 5 37 37 H 1.09003 * 109.49989 * 182.40388 * 9 8 6 38 38 H 1.09000 * 109.50022 * 62.28974 * 9 8 6 39 39 H 1.08995 * 109.45847 * 299.16155 * 10 9 8 40 40 H 1.09001 * 109.44889 * 179.19136 * 10 9 8 41 41 H 1.09004 * 109.47048 * 306.04851 * 12 11 10 42 42 H 1.09002 * 109.47315 * 186.04958 * 12 11 10 43 43 H 1.09004 * 109.47016 * 60.00104 * 13 12 11 44 44 H 1.09002 * 109.47172 * 300.00318 * 13 12 11 45 45 H 1.09002 * 109.47391 * 89.99442 * 17 16 14 46 46 H 1.09001 * 109.46813 * 329.99499 * 17 16 14 47 47 H 1.09004 * 109.47041 * 209.99626 * 17 16 14 48 48 H 1.08993 * 109.47560 * 30.00104 * 18 16 14 49 49 H 1.09000 * 109.47209 * 150.00790 * 18 16 14 50 50 H 0.96993 * 120.00222 * 180.02562 * 22 21 19 51 51 H 1.09005 * 109.46191 * 181.76102 * 27 11 10 52 52 H 1.09001 * 109.46288 * 301.72383 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 8 3.9658 0.5794 -1.2202 6 6 5.3821 0.4189 -1.3216 7 1 5.8791 1.2111 -0.7617 8 6 5.7848 -0.9424 -0.7480 9 6 7.2951 -1.1315 -0.9152 10 6 7.6580 -1.0140 -2.3972 11 7 7.2532 0.3056 -2.8984 12 6 7.7097 0.5065 -4.2802 13 6 6.9834 -0.4725 -5.2048 14 6 7.4512 -0.2659 -6.6223 15 8 8.2840 0.5807 -6.8688 16 7 6.9449 -1.0226 -7.6161 17 6 5.9394 -2.0456 -7.3183 18 6 7.4001 -0.8221 -8.9940 19 6 6.5243 0.2022 -9.6685 20 1 5.7103 0.6586 -9.1248 21 6 6.7622 0.5567 -10.9794 22 7 7.7538 0.0014 -11.6413 23 14 5.6771 1.8270 -11.8151 24 1 4.6413 2.2979 -10.8608 25 1 6.5079 2.9781 -12.2508 26 1 5.0197 1.2152 -12.9978 27 6 5.8005 0.4914 -2.7918 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8899 33 1 3.8507 0.5686 0.8427 34 1 3.9784 2.1766 0.0903 35 1 5.2574 -1.7330 -1.2818 36 1 5.5276 -0.9822 0.3105 37 1 7.5814 -2.1168 -0.5473 38 1 7.8227 -0.3637 -0.3493 39 1 7.1407 -1.7907 -2.9604 40 1 8.7346 -1.1338 -2.5179 41 1 8.7840 0.3310 -4.3371 42 1 7.4917 1.5286 -4.5899 43 1 5.9091 -0.2970 -5.1479 44 1 7.2014 -1.4946 -4.8951 45 1 4.9436 -1.6082 -7.3903 46 1 6.0967 -2.4267 -6.3092 47 1 6.0299 -2.8631 -8.0337 48 1 8.4318 -0.4707 -8.9884 49 1 7.3404 -1.7652 -9.5373 50 1 7.9214 0.2511 -12.5634 51 1 5.5281 1.4650 -3.1994 52 1 5.2920 -0.2923 -3.3533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179383372.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:33 Heat of formation + Delta-G solvation = -151.592787 kcal Electronic energy + Delta-G solvation = -28828.571746 eV Core-core repulsion = 24827.262071 eV Total energy + Delta-G solvation = -4001.309675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.07145 -40.24178 -39.03572 -37.90468 -36.63022 -34.89422 -34.59430 -31.90809 -31.36527 -30.07280 -29.46470 -27.37856 -27.12828 -26.38022 -24.71400 -23.85062 -23.49759 -22.67754 -20.80254 -19.76301 -18.74146 -18.29265 -17.76053 -17.61223 -17.16118 -16.93464 -16.69020 -16.37369 -16.21354 -15.98852 -15.84918 -15.69875 -15.03303 -14.88186 -14.61170 -14.26399 -14.20078 -13.85669 -13.79604 -13.66881 -13.49787 -13.47234 -13.21315 -13.12477 -12.96830 -12.80797 -12.53797 -12.51528 -12.23686 -12.17027 -12.15335 -11.81637 -11.72095 -11.67928 -11.64605 -11.44083 -10.67064 -10.64308 -10.62823 -10.38873 -9.45907 -9.33891 -8.24689 -6.39577 1.34503 1.37015 1.48923 1.79916 2.27231 2.37639 2.49377 2.87643 3.04534 3.17689 3.75308 3.79249 3.84266 3.95452 4.02631 4.05532 4.13065 4.20645 4.27459 4.29363 4.34124 4.45856 4.48065 4.50671 4.58003 4.58637 4.60539 4.65807 4.70586 4.77571 4.80309 4.83767 4.87422 4.88379 4.96559 4.99525 5.00399 5.10136 5.14961 5.19454 5.21278 5.41061 5.53736 5.81313 5.97023 6.03839 6.05507 6.22093 6.37767 6.66668 6.75839 7.25805 7.45257 8.82663 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.002488 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.496343 B =11251.263887 C =12691.123027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.059 3.941 4 C 0.059 3.941 5 O -0.397 6.397 6 C 0.098 3.902 7 H 0.074 0.926 8 C -0.136 4.136 9 C -0.107 4.107 10 C 0.041 3.959 11 N -0.529 5.529 12 C 0.083 3.917 13 C -0.157 4.157 14 C 0.498 3.502 15 O -0.595 6.595 16 N -0.613 5.613 17 C 0.082 3.918 18 C 0.258 3.742 19 C -0.542 4.542 20 H 0.050 0.950 21 C 0.006 3.994 22 N -0.928 5.928 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.268 1.268 27 C 0.054 3.946 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.055 0.945 46 H 0.096 0.904 47 H 0.072 0.928 48 H -0.001 1.001 49 H 0.024 0.976 50 H 0.268 0.732 51 H 0.070 0.930 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 -2.782 29.249 31.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.018 4.018 4 C -0.017 4.017 5 O -0.316 6.316 6 C 0.040 3.960 7 H 0.092 0.908 8 C -0.174 4.174 9 C -0.144 4.144 10 C -0.086 4.086 11 N -0.253 5.253 12 C -0.045 4.045 13 C -0.199 4.199 14 C 0.287 3.713 15 O -0.477 6.477 16 N -0.344 5.344 17 C -0.060 4.060 18 C 0.136 3.864 19 C -0.581 4.581 20 H 0.068 0.932 21 C -0.193 4.193 22 N -0.568 5.568 23 Si 0.793 3.207 24 H -0.193 1.193 25 H -0.206 1.206 26 H -0.193 1.193 27 C -0.074 4.074 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.114 0.886 47 H 0.090 0.910 48 H 0.017 0.983 49 H 0.042 0.958 50 H 0.077 0.923 51 H 0.089 0.911 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.261 -2.249 29.118 30.955 hybrid contribution -0.735 0.336 -1.504 1.707 sum -10.996 -1.913 27.615 29.785 Atomic orbital electron populations 1.22893 0.79773 1.03607 1.00756 1.87912 1.21200 1.28617 1.95587 1.22720 0.92191 0.85014 1.01845 1.22743 0.93626 0.98220 0.87099 1.87920 1.22272 1.82219 1.39227 1.21995 0.80774 0.97680 0.95590 0.90842 1.22036 0.96713 0.97057 1.01585 1.21517 0.94763 1.03200 0.94958 1.22333 1.01334 0.88657 0.96320 1.62152 1.12616 1.31211 1.19277 1.21789 0.99516 0.98302 0.84934 1.22306 1.03120 1.03914 0.90516 1.21235 0.81254 0.80524 0.88301 1.90634 1.35778 1.35893 1.85344 1.48234 1.41489 1.36454 1.08240 1.21883 0.90989 0.90528 1.02635 1.18790 0.94170 0.95743 0.77681 1.21709 1.14964 1.24026 0.97396 0.93159 1.25876 0.96883 0.98558 0.97939 1.70050 1.30967 1.44416 1.11360 0.85350 0.78497 0.78462 0.78391 1.19263 1.20589 1.19265 1.22038 0.87648 1.01667 0.96040 0.89036 0.92552 0.93842 0.89385 0.92809 0.92040 0.89998 0.92127 0.90827 0.89333 0.90791 0.94007 0.89877 0.90377 0.91624 0.88053 0.86822 0.92682 0.88598 0.90955 0.98290 0.95819 0.92335 0.91119 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -7.83 10.67 -144.35 -1.54 -9.37 16 3 C 0.06 0.84 6.32 71.99 0.45 1.29 16 4 C 0.06 0.89 6.13 71.99 0.44 1.33 16 5 O -0.40 -8.41 9.96 -144.35 -1.44 -9.85 16 6 C 0.10 1.83 2.77 30.64 0.08 1.91 16 7 H 0.07 1.27 7.79 -2.39 -0.02 1.26 16 8 C -0.14 -2.18 5.62 30.67 0.17 -2.00 16 9 C -0.11 -1.51 6.09 30.65 0.19 -1.32 16 10 C 0.04 0.73 5.05 86.33 0.44 1.17 16 11 N -0.53 -11.75 4.86 -896.38 -4.35 -16.11 16 12 C 0.08 2.33 4.65 86.30 0.40 2.73 16 13 C -0.16 -4.50 3.55 29.85 0.11 -4.39 16 14 C 0.50 21.13 7.67 87.66 0.67 21.81 16 15 O -0.59 -31.27 15.56 -3.02 -0.05 -31.32 16 16 N -0.61 -26.85 2.86 -851.13 -2.43 -29.28 16 17 C 0.08 2.55 10.29 127.77 1.31 3.86 16 18 C 0.26 14.30 5.20 85.63 0.45 14.75 16 19 C -0.54 -32.15 9.39 25.60 0.24 -31.91 16 20 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 21 C 0.01 0.37 5.46 84.65 0.46 0.83 16 22 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 23 Si 0.97 45.84 29.54 68.60 2.03 47.86 16 24 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.05 1.19 4.49 86.33 0.39 1.58 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.84 7.94 -2.39 -0.02 0.82 16 34 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.04 7.94 -2.39 -0.02 1.02 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.04 0.73 6.75 -2.39 -0.02 0.71 16 40 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 41 H 0.08 2.31 8.02 -2.39 -0.02 2.29 16 42 H 0.07 2.11 8.10 -2.39 -0.02 2.09 16 43 H 0.10 2.70 6.47 -2.39 -0.02 2.68 16 44 H 0.11 2.62 5.94 -2.39 -0.01 2.61 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.10 2.17 6.44 -2.39 -0.02 2.15 16 47 H 0.07 2.18 7.89 -2.38 -0.02 2.16 16 48 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 49 H 0.02 1.33 7.89 -2.39 -0.02 1.31 16 50 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 51 H 0.07 1.69 8.12 -2.38 -0.02 1.67 16 52 H 0.04 0.97 6.61 -2.39 -0.02 0.95 16 Total: -1.00 -77.73 410.60 0.42 -77.31 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.87 Total: 14.34 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 7.05 Total: 13.19 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -6.50 Total: -102.16 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -3.02 Total: -50.54 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -77.73 0.42 -77.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179383372.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.281 kcal (2) G-P(sol) polarization free energy of solvation -77.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds