Wall clock time and date at job start Tue Mar 31 2020 04:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99725 * 2 1 4 4 C 1.52997 * 109.46812 * 180.02562 * 3 2 1 5 5 O 1.42901 * 109.47622 * 64.99804 * 4 3 2 6 6 C 1.42895 * 114.00617 * 180.02562 * 5 4 3 7 7 H 1.09006 * 109.53460 * 29.90178 * 6 5 4 8 8 C 1.53123 * 109.50230 * 269.80530 * 6 5 4 9 9 C 1.53124 * 109.15980 * 182.40104 * 8 6 5 10 10 C 1.53041 * 109.27510 * 57.65355 * 9 8 6 11 11 N 1.46842 * 109.52407 * 300.81747 * 10 9 8 12 12 C 1.46903 * 111.00077 * 185.84059 * 11 10 9 13 13 C 1.53006 * 109.46632 * 65.79321 * 12 11 10 14 14 C 1.50707 * 109.46465 * 180.02562 * 13 12 11 15 15 O 1.21271 * 120.00267 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99323 * 179.97438 * 14 13 12 17 17 C 1.46495 * 120.00112 * 0.02562 * 16 14 13 18 18 C 1.46501 * 119.99361 * 179.97438 * 16 14 13 19 19 C 1.50700 * 109.47021 * 90.00553 * 18 16 14 20 20 H 1.08003 * 120.00061 * 359.97438 * 19 18 16 21 21 C 1.37877 * 120.00327 * 180.02562 * 19 18 16 22 22 N 1.31519 * 119.99495 * 359.97438 * 21 19 18 23 23 Si 1.86790 * 120.00296 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47019 * 89.99814 * 23 21 19 25 25 H 1.48507 * 109.47441 * 209.99566 * 23 21 19 26 26 H 1.48494 * 109.47448 * 329.99849 * 23 21 19 27 27 C 1.46846 * 111.19700 * 61.74724 * 11 10 9 28 28 H 1.08994 * 109.46967 * 60.00074 * 1 2 3 29 29 H 1.08997 * 109.46626 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46498 * 300.00302 * 1 2 3 31 31 H 1.08998 * 109.47525 * 60.00213 * 3 2 1 32 32 H 1.09002 * 109.47188 * 299.99551 * 3 2 1 33 33 H 1.09004 * 109.47449 * 304.99828 * 4 3 2 34 34 H 1.09003 * 109.47429 * 184.99945 * 4 3 2 35 35 H 1.09000 * 109.52181 * 302.30583 * 8 6 5 36 36 H 1.08997 * 109.52376 * 62.49688 * 8 6 5 37 37 H 1.08997 * 109.50272 * 297.71554 * 9 8 6 38 38 H 1.08997 * 109.53375 * 177.61494 * 9 8 6 39 39 H 1.09006 * 109.45562 * 180.80294 * 10 9 8 40 40 H 1.08991 * 109.45245 * 60.83364 * 10 9 8 41 41 H 1.08996 * 109.47208 * 185.79079 * 12 11 10 42 42 H 1.08994 * 109.47072 * 305.79600 * 12 11 10 43 43 H 1.09005 * 109.47148 * 299.99641 * 13 12 11 44 44 H 1.08994 * 109.47164 * 60.00335 * 13 12 11 45 45 H 1.08999 * 109.47289 * 89.99739 * 17 16 14 46 46 H 1.09000 * 109.46822 * 210.00022 * 17 16 14 47 47 H 1.08999 * 109.47393 * 329.99761 * 17 16 14 48 48 H 1.09006 * 109.46720 * 210.00028 * 18 16 14 49 49 H 1.08995 * 109.47589 * 330.00000 * 18 16 14 50 50 H 0.96995 * 119.99744 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.46089 * 178.24127 * 27 11 10 52 52 H 1.08998 * 109.46294 * 58.27156 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2219 6 6 5.3811 0.4191 -1.3246 7 1 5.8056 0.2836 -0.3298 8 6 5.9909 1.6638 -1.9754 9 6 7.4998 1.4588 -2.1362 10 6 7.7525 0.2030 -2.9736 11 7 7.1507 -0.9596 -2.3085 12 6 7.4915 -2.2034 -3.0120 13 6 8.9969 -2.4543 -2.9040 14 6 9.3466 -3.7299 -3.6263 15 8 8.4774 -4.3750 -4.1731 16 7 10.6255 -4.1538 -3.6645 17 6 11.6754 -3.3748 -3.0035 18 6 10.9653 -5.3941 -4.3661 19 6 11.2897 -5.0847 -5.8049 20 1 11.2465 -4.0660 -6.1612 21 6 11.6404 -6.1021 -6.6668 22 7 11.6924 -7.3426 -6.2331 23 14 12.0418 -5.7186 -8.4503 24 1 13.4947 -5.4413 -8.5822 25 1 11.6807 -6.8817 -9.3002 26 1 11.2691 -4.5279 -8.8867 27 6 5.6954 -0.8065 -2.1854 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8515 0.5683 0.8410 34 1 3.9786 2.1765 0.0889 35 1 5.5383 1.8218 -2.9543 36 1 5.8066 2.5326 -1.3434 37 1 7.9575 1.3397 -1.1542 38 1 7.9337 2.3240 -2.6375 39 1 8.8262 0.0463 -3.0780 40 1 7.3063 0.3285 -3.9600 41 1 6.9511 -3.0357 -2.5610 42 1 7.2123 -2.1152 -4.0619 43 1 9.5373 -1.6220 -3.3551 44 1 9.2761 -2.5425 -1.8541 45 1 11.7853 -3.7137 -1.9734 46 1 12.6178 -3.5119 -3.5337 47 1 11.4043 -2.3191 -3.0117 48 1 11.8304 -5.8557 -3.8898 49 1 10.1187 -6.0793 -4.3238 50 1 11.9396 -8.0583 -6.8393 51 1 5.2749 -1.6965 -1.7174 52 1 5.2589 -0.6764 -3.1757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179383386.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:35 Heat of formation + Delta-G solvation = -152.655075 kcal Electronic energy + Delta-G solvation = -28346.501102 eV Core-core repulsion = 24345.145363 eV Total energy + Delta-G solvation = -4001.355739 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 328.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90723 -40.27887 -39.02602 -37.88900 -36.59818 -34.86360 -34.55607 -32.07909 -31.56628 -30.05030 -29.45263 -27.32017 -27.15556 -26.21429 -24.62562 -23.90927 -23.49984 -22.47847 -20.81979 -19.88993 -18.70693 -18.25565 -17.82652 -17.53537 -17.13298 -16.85715 -16.77588 -16.42347 -16.25316 -15.92465 -15.81747 -15.73176 -15.26298 -14.79942 -14.59957 -14.25007 -14.11281 -13.97035 -13.86382 -13.63843 -13.44220 -13.36180 -13.24898 -13.08678 -12.81148 -12.72188 -12.56668 -12.44525 -12.32659 -12.21432 -12.05544 -11.99338 -11.73320 -11.71231 -11.52761 -11.42470 -10.64907 -10.64317 -10.60513 -10.40706 -9.43800 -9.39883 -8.22992 -6.38058 1.35150 1.38566 1.48716 1.85251 2.17910 2.36887 2.57914 2.87693 3.06090 3.16085 3.74454 3.80793 3.84461 3.96468 4.03340 4.09887 4.16353 4.21699 4.26590 4.34613 4.41890 4.44628 4.50256 4.53965 4.55446 4.59105 4.64682 4.66747 4.72631 4.76126 4.78951 4.85825 4.90405 4.93813 4.96784 4.97816 5.00779 5.05296 5.09586 5.18800 5.23905 5.40610 5.56166 5.84785 5.92398 6.01980 6.05853 6.21447 6.36611 6.69385 6.80300 7.27716 7.49534 8.84032 Molecular weight = 328.22amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.001971 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.237737 B =14203.242215 C =14714.286035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.058 3.942 4 C 0.059 3.941 5 O -0.400 6.400 6 C 0.100 3.900 7 H 0.077 0.923 8 C -0.138 4.138 9 C -0.106 4.106 10 C 0.039 3.961 11 N -0.527 5.527 12 C 0.081 3.919 13 C -0.113 4.113 14 C 0.493 3.507 15 O -0.603 6.603 16 N -0.611 5.611 17 C 0.078 3.922 18 C 0.257 3.743 19 C -0.542 4.542 20 H 0.053 0.947 21 C 0.005 3.995 22 N -0.929 5.929 23 Si 0.969 3.031 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.274 1.274 27 C 0.060 3.940 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.020 0.980 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.024 0.976 49 H -0.004 1.004 50 H 0.267 0.733 51 H 0.069 0.931 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 25.408 16.427 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.018 4.018 4 C -0.017 4.017 5 O -0.319 6.319 6 C 0.042 3.958 7 H 0.095 0.905 8 C -0.175 4.175 9 C -0.143 4.143 10 C -0.088 4.088 11 N -0.252 5.252 12 C -0.047 4.047 13 C -0.152 4.152 14 C 0.282 3.718 15 O -0.485 6.485 16 N -0.342 5.342 17 C -0.064 4.064 18 C 0.136 3.864 19 C -0.581 4.581 20 H 0.072 0.928 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.794 3.206 24 H -0.186 1.186 25 H -0.207 1.207 26 H -0.198 1.198 27 C -0.069 4.069 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.042 0.958 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.131 0.869 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.084 0.916 47 H 0.115 0.885 48 H 0.042 0.958 49 H 0.014 0.986 50 H 0.076 0.924 51 H 0.088 0.912 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.643 24.652 16.440 32.621 hybrid contribution -0.334 -0.448 -1.871 1.953 sum -13.976 24.204 14.569 31.519 Atomic orbital electron populations 1.22890 0.79718 1.03509 1.00885 1.87936 1.21310 1.28933 1.95605 1.22747 0.92159 0.84892 1.02001 1.22768 0.93695 0.98652 0.86609 1.87915 1.22339 1.82368 1.39283 1.21974 0.80619 0.93973 0.99239 0.90475 1.22076 0.96263 0.97814 1.01388 1.21522 0.95051 0.96411 1.01356 1.22397 1.00634 0.90412 0.95394 1.61860 1.09661 1.02170 1.51534 1.21600 0.95239 0.91902 0.95997 1.21550 0.96901 0.93906 1.02874 1.21394 0.81996 0.87949 0.80432 1.90635 1.49131 1.59809 1.48941 1.48200 1.07792 1.25388 1.52841 1.21948 0.90711 0.96455 0.97239 1.18756 0.94271 0.82191 0.91210 1.21709 1.46423 0.93922 0.96050 0.92841 1.25899 0.95172 0.94641 1.03695 1.70058 1.48885 1.00329 1.37564 0.85390 0.79035 0.77674 0.78547 1.18597 1.20677 1.19849 1.21961 0.87673 0.98584 0.98643 0.93567 0.89380 0.92418 0.89233 0.92481 0.92484 0.89303 0.92511 0.89777 0.89966 0.89210 0.88961 0.95756 0.91582 0.96209 0.86855 0.85864 0.91082 0.91643 0.88523 0.95806 0.98619 0.92406 0.91230 0.95626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -8.27 10.67 -144.34 -1.54 -9.81 16 3 C 0.06 0.79 6.32 71.98 0.45 1.25 16 4 C 0.06 0.85 6.13 71.98 0.44 1.29 16 5 O -0.40 -8.52 9.96 -144.34 -1.44 -9.95 16 6 C 0.10 1.89 2.77 30.65 0.08 1.98 16 7 H 0.08 1.34 7.79 -2.38 -0.02 1.32 16 8 C -0.14 -2.05 5.62 30.68 0.17 -1.88 16 9 C -0.11 -1.43 6.09 30.65 0.19 -1.24 16 10 C 0.04 0.74 5.29 86.33 0.46 1.20 16 11 N -0.53 -12.23 4.66 -896.37 -4.17 -16.40 16 12 C 0.08 2.40 4.25 86.30 0.37 2.77 16 13 C -0.11 -3.16 4.18 29.85 0.12 -3.03 16 14 C 0.49 20.93 7.67 87.66 0.67 21.60 16 15 O -0.60 -32.37 15.56 -3.00 -0.05 -32.42 16 16 N -0.61 -26.35 2.86 -851.13 -2.43 -28.79 16 17 C 0.08 2.30 10.24 127.77 1.31 3.61 16 18 C 0.26 14.26 5.16 85.63 0.44 14.70 16 19 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 20 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 21 C 0.00 0.28 5.46 84.65 0.46 0.74 16 22 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 23 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 27 C 0.06 1.44 5.11 86.33 0.44 1.88 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 34 H 0.09 0.78 7.95 -2.39 -0.02 0.76 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.92 7.95 -2.39 -0.02 0.90 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 1.55 6.21 -2.38 -0.01 1.54 16 40 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 2.18 7.94 -2.39 -0.02 2.16 16 42 H 0.02 0.68 8.08 -2.39 -0.02 0.66 16 43 H 0.11 2.60 5.69 -2.38 -0.01 2.59 16 44 H 0.12 2.82 8.11 -2.39 -0.02 2.80 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.06 2.03 8.07 -2.39 -0.02 2.01 16 47 H 0.10 2.08 6.44 -2.39 -0.02 2.06 16 48 H 0.02 1.33 8.07 -2.38 -0.02 1.31 16 49 H 0.00 -0.28 7.42 -2.39 -0.02 -0.30 16 50 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 51 H 0.07 1.82 8.02 -2.39 -0.02 1.81 16 52 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -80.31 414.06 0.65 -79.67 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.86 Total: 12.22 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 7.10 Total: 14.75 kcal Atomic # 7 Polarization: -95.80 SS G_CDS: -6.32 Total: -102.12 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -3.02 Total: -52.19 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -80.31 0.65 -79.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179383386.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.990 kcal (2) G-P(sol) polarization free energy of solvation -80.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds