Wall clock time and date at job start Tue Mar 31 2020 05:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00249 * 2 1 4 4 O 1.20823 * 120.00160 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00140 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47363 * 174.45200 * 5 3 2 7 7 H 1.09003 * 109.46841 * 54.25425 * 6 5 3 8 8 N 1.46502 * 109.47249 * 294.25853 * 6 5 3 9 9 C 1.34775 * 119.99663 * 158.78321 * 8 6 5 10 10 O 1.21695 * 120.00402 * 354.78622 * 9 8 6 11 11 C 1.46375 * 119.99622 * 174.79432 * 9 8 6 12 12 H 1.08002 * 120.00110 * 359.97438 * 11 9 8 13 13 C 1.40054 * 119.99859 * 179.97438 * 11 9 8 14 14 N 1.30672 * 120.00068 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 119.99960 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47230 * 59.99995 * 15 13 11 17 17 H 1.48502 * 109.47060 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47113 * 299.99972 * 15 13 11 19 19 C 1.50702 * 109.47218 * 174.25316 * 6 5 3 20 20 C 1.38261 * 119.97367 * 79.72756 * 19 6 5 21 21 C 1.38214 * 120.06308 * 179.76338 * 20 19 6 22 22 C 1.38324 * 120.00873 * 0.51516 * 21 20 19 23 23 Cl 1.73598 * 120.02377 * 179.76552 * 22 21 20 24 24 C 1.38548 * 119.95155 * 359.73886 * 22 21 20 25 25 F 1.35101 * 120.02891 * 180.02562 * 24 22 21 26 26 C 1.38194 * 119.97444 * 260.00283 * 19 6 5 27 27 H 1.08995 * 109.47133 * 59.99735 * 1 2 3 28 28 H 1.08995 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46769 * 299.99934 * 1 2 3 30 30 H 1.09003 * 109.47100 * 54.45477 * 5 3 2 31 31 H 1.08999 * 109.47509 * 294.45616 * 5 3 2 32 32 H 0.96990 * 119.99718 * 338.50233 * 8 6 5 33 33 H 0.96994 * 119.99890 * 179.97438 * 14 13 11 34 34 H 1.08002 * 119.96949 * 359.97438 * 20 19 6 35 35 H 1.07995 * 119.99779 * 180.23304 * 21 20 19 36 36 H 1.07995 * 120.00619 * 0.02562 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0005 2.7353 -0.1399 7 1 3.5240 3.3317 0.6381 8 7 3.6008 3.2402 -1.4558 9 6 3.4794 4.5668 -1.6601 10 8 3.6086 5.3401 -0.7294 11 6 3.1919 5.0774 -3.0014 12 1 3.0775 4.3911 -3.8275 13 6 3.0652 6.4559 -3.2136 14 7 3.2041 7.2863 -2.2143 15 14 2.6990 7.1076 -4.9255 16 1 1.4069 6.5512 -5.4012 17 1 2.6148 8.5897 -4.8834 18 1 3.7849 6.7002 -5.8530 19 6 5.4979 2.8298 0.0009 20 6 6.3137 2.5153 -1.0702 21 6 7.6871 2.6061 -0.9447 22 6 8.2473 3.0015 0.2566 23 17 9.9725 3.1098 0.4166 24 6 7.4306 3.3117 1.3319 25 9 7.9760 3.6986 2.5058 26 6 6.0549 3.2252 1.2022 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9601 0.6973 -0.8370 31 1 3.9518 0.8688 0.9346 32 1 3.4276 2.6199 -2.1811 33 1 3.1167 8.2411 -2.3614 34 1 5.8772 2.2018 -2.0070 35 1 8.3232 2.3639 -1.7832 36 1 5.4172 3.4659 2.0399 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195567598.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:24 Heat of formation + Delta-G solvation = -150.293683 kcal Electronic energy + Delta-G solvation = -25589.296849 eV Core-core repulsion = 21400.074421 eV Total energy + Delta-G solvation = -4189.222427 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 329.066 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.80370 -40.44703 -39.31264 -37.41144 -36.42752 -36.29481 -34.34263 -32.42464 -31.01032 -30.35187 -29.88889 -27.58569 -26.23977 -24.25272 -22.88879 -21.60090 -20.58010 -19.55322 -17.84215 -17.36136 -17.07359 -16.54607 -16.41192 -16.27039 -16.18407 -15.59851 -15.31328 -14.58851 -14.37619 -14.10381 -13.79343 -13.43333 -13.28419 -13.15970 -12.84077 -12.45776 -12.32081 -12.17796 -11.97518 -11.92068 -11.55570 -11.23935 -11.12641 -11.03215 -10.91302 -10.77422 -10.71262 -10.46183 -10.28251 -10.23712 -8.86397 -8.82934 -8.48454 -7.68796 -7.60747 -6.18589 -4.64452 1.08085 1.25064 2.06987 2.40264 2.76403 3.15266 3.20409 3.21919 3.56394 4.07401 4.18194 4.53986 4.55376 4.74787 4.86403 4.88642 5.10742 5.12719 5.19132 5.27634 5.29704 5.41653 5.49734 5.57280 5.69865 5.81433 5.97355 6.05835 6.23145 6.24055 6.49021 6.66360 6.84047 7.42618 7.81893 7.93085 7.99100 8.28055 9.02251 9.46234 10.59509 10.77899 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.007704 B = 0.005021 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.583494 B = 5574.821165 C = 8325.739720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.452 3.548 4 O -0.474 6.474 5 C -0.115 4.115 6 C 0.202 3.798 7 H 0.101 0.899 8 N -0.753 5.753 9 C 0.562 3.438 10 O -0.572 6.572 11 C -0.544 4.544 12 H 0.066 0.934 13 C 0.089 3.911 14 N -0.766 5.766 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.043 4.043 20 C -0.093 4.093 21 C -0.085 4.085 22 C -0.078 4.078 23 Cl -0.064 7.064 24 C 0.106 3.894 25 F -0.132 7.132 26 C -0.126 4.126 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.379 0.621 33 H 0.269 0.731 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 -15.603 3.274 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.293 3.707 4 O -0.358 6.358 5 C -0.153 4.153 6 C 0.094 3.906 7 H 0.119 0.881 8 N -0.408 5.408 9 C 0.366 3.634 10 O -0.453 6.453 11 C -0.581 4.581 12 H 0.084 0.916 13 C -0.131 4.131 14 N -0.394 5.394 15 Si 0.731 3.269 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.046 4.046 20 C -0.112 4.112 21 C -0.104 4.104 22 C -0.106 4.106 23 Cl -0.035 7.035 24 C 0.086 3.914 25 F -0.110 7.110 26 C -0.146 4.146 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.079 0.921 30 H 0.126 0.874 31 H 0.132 0.868 32 H 0.211 0.789 33 H 0.079 0.921 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.201 -14.458 4.093 15.603 hybrid contribution -0.176 0.273 -1.024 1.074 sum 4.026 -14.185 3.069 15.061 Atomic orbital electron populations 1.23203 0.76658 1.03177 1.02714 1.86476 1.23223 1.33973 1.84868 1.23632 0.92032 0.81431 0.73624 1.90819 1.66638 1.35781 1.42574 1.21690 0.88126 0.99263 1.06204 1.19206 0.88017 0.91303 0.92065 0.88146 1.46200 1.76313 1.09016 1.09222 1.18134 0.76506 0.78723 0.90006 1.90612 1.54956 1.55275 1.44494 1.20789 1.52117 0.92035 0.93111 0.91621 1.25675 0.92925 0.96874 0.97645 1.70000 1.35125 1.03109 1.31193 0.86469 0.79545 0.77945 0.82989 1.19336 1.20576 1.19314 1.20391 0.97133 0.94855 0.92189 1.21016 0.91863 0.99123 0.99201 1.20910 0.95483 0.98771 0.95230 1.20914 0.84864 1.08984 0.95842 1.98357 1.10138 1.96960 1.98041 1.17321 0.91141 1.01629 0.81353 1.91510 1.86103 1.88564 1.44841 1.20988 0.91969 1.01885 0.99753 0.91803 0.88479 0.92074 0.87368 0.86828 0.78941 0.92059 0.84306 0.84241 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -4.56 10.56 -39.25 -0.41 -4.98 16 3 C 0.45 6.60 7.78 36.00 0.28 6.88 16 4 O -0.47 -9.14 15.22 -18.75 -0.29 -9.43 16 5 C -0.11 -1.39 5.31 -27.88 -0.15 -1.54 16 6 C 0.20 3.42 1.72 -69.08 -0.12 3.30 16 7 H 0.10 2.04 7.19 -51.93 -0.37 1.67 16 8 N -0.75 -15.33 3.69 -56.34 -0.21 -15.54 16 9 C 0.56 15.28 7.65 -12.99 -0.10 15.18 16 10 O -0.57 -17.95 14.72 5.19 0.08 -17.88 16 11 C -0.54 -14.98 9.54 -35.63 -0.34 -15.32 16 12 H 0.07 1.65 7.85 -52.49 -0.41 1.23 16 13 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 14 N -0.77 -22.92 11.83 55.55 0.66 -22.26 16 15 Si 0.91 20.08 29.56 -169.99 -5.02 15.06 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 C -0.04 -0.69 4.86 -104.63 -0.51 -1.20 16 20 C -0.09 -1.34 9.32 -39.58 -0.37 -1.71 16 21 C -0.09 -1.15 9.83 -39.56 -0.39 -1.54 16 22 C -0.08 -1.15 6.33 -39.44 -0.25 -1.40 16 23 Cl -0.06 -0.85 28.62 -51.86 -1.48 -2.34 16 24 C 0.11 1.65 7.28 -39.39 -0.29 1.37 16 25 F -0.13 -2.08 16.84 2.25 0.04 -2.04 16 26 C -0.13 -1.99 9.65 -39.52 -0.38 -2.37 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.38 6.73 8.55 -40.82 -0.35 6.38 16 33 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 34 H 0.14 1.80 7.72 -52.49 -0.41 1.39 16 35 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.14 2.08 8.04 -52.49 -0.42 1.66 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -36.09 344.06 -6.73 -42.82 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -3.63 Total: 5.95 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.64 Total: 5.45 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.45 Total: -37.80 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.62 Total: -32.28 kcal Atomic # 9 Polarization: -2.08 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.48 Total: -2.34 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.09 -6.73 -42.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195567598.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.475 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds