Wall clock time and date at job start Tue Mar 31 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34668 * 116.99906 * 2 1 4 4 O 1.21403 * 119.99957 * 0.02562 * 3 2 1 5 5 C 1.48168 * 119.99927 * 180.27718 * 3 2 1 6 6 C 1.39781 * 119.85702 * 359.72451 * 5 3 2 7 7 C 1.36468 * 120.30308 * 179.97438 * 6 5 3 8 8 N 1.48022 * 120.00786 * 179.97438 * 7 6 5 9 9 O 1.31700 * 119.99606 * 353.76492 * 8 7 6 10 10 O 1.31698 * 120.00337 * 173.77288 * 8 7 6 11 11 C 1.41090 * 119.99159 * 359.97438 * 7 6 5 12 12 C 1.40815 * 120.14607 * 180.02562 * 11 7 6 13 13 H 1.08002 * 119.99756 * 324.06697 * 12 11 7 14 14 C 1.46418 * 120.00389 * 144.07343 * 12 11 7 15 15 N 1.29563 * 120.00421 * 170.79876 * 14 12 11 16 16 Si 1.86806 * 119.99750 * 350.80251 * 14 12 11 17 17 H 1.48499 * 109.47303 * 88.47064 * 16 14 12 18 18 H 1.48498 * 109.47006 * 208.47072 * 16 14 12 19 19 H 1.48498 * 109.47173 * 328.46825 * 16 14 12 20 20 C 1.41030 * 119.70643 * 0.02562 * 11 7 6 21 21 C 1.37707 * 119.70220 * 359.74323 * 20 11 7 22 22 Br 1.89100 * 119.99483 * 180.25048 * 21 20 11 23 23 H 1.08994 * 109.47406 * 60.00250 * 1 2 3 24 24 H 1.09013 * 109.46767 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47289 * 299.99656 * 1 2 3 26 26 H 1.08004 * 119.85013 * 359.95661 * 6 5 3 27 27 H 0.97004 * 120.00220 * 180.02562 * 15 14 12 28 28 H 1.07988 * 120.14360 * 179.97438 * 20 11 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1999 0.0000 4 8 1.4021 2.2181 0.0005 5 6 3.5430 1.2775 -0.0062 6 6 4.3014 0.1033 -0.0062 7 6 5.6647 0.1641 -0.0124 8 7 6.4614 -1.0834 -0.0119 9 8 5.8607 -2.2482 0.1185 10 8 7.7708 -1.0287 -0.1415 11 6 6.3148 1.4163 -0.0194 12 6 7.7213 1.4828 -0.0264 13 1 8.2991 0.7535 0.5220 14 6 8.4005 2.5407 -0.7769 15 7 9.6777 2.7128 -0.6426 16 14 7.4257 3.6425 -1.9282 17 1 6.9050 4.8103 -1.1730 18 1 8.3076 4.1157 -3.0253 19 1 6.2895 2.8773 -2.5016 20 6 5.5496 2.6010 -0.0194 21 6 4.1746 2.5252 -0.0179 22 35 3.1406 4.1084 -0.0250 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 3.8061 -0.8565 -0.0010 27 1 10.1276 3.4140 -1.1395 28 1 6.0399 3.5632 -0.0243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000199820807.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:03 Heat of formation + Delta-G solvation = -34.911939 kcal Electronic energy + Delta-G solvation = -19923.741311 eV Core-core repulsion = 16376.888642 eV Total energy + Delta-G solvation = -3546.852669 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 328.978 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05617 -38.80442 -36.91369 -35.92123 -34.70709 -33.09856 -32.01304 -31.61646 -29.22969 -27.94606 -26.49399 -24.86112 -22.74091 -21.80833 -20.20853 -18.65821 -17.95694 -17.04079 -16.47326 -16.08844 -15.95242 -15.62328 -14.80694 -14.47715 -14.41564 -13.96349 -13.42415 -13.26100 -12.99953 -12.58339 -11.98779 -11.81974 -11.67105 -11.32417 -11.31190 -10.86613 -10.63447 -10.54325 -10.35033 -10.09084 -9.94888 -9.58290 -9.44224 -8.75614 -8.66262 -8.50908 -8.00177 -5.58123 0.51328 1.27036 2.03446 2.09012 2.48899 2.57039 2.59149 2.69407 2.95664 3.12532 3.26342 3.65009 4.29443 5.12133 5.20604 5.27662 5.33794 5.51435 5.62772 5.69366 5.90543 6.04653 6.22226 6.30991 6.56026 6.76542 6.81137 6.95509 7.14363 7.51734 7.67616 8.21334 8.25666 8.82066 Molecular weight = 328.98amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.007490 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.639445 B = 3737.420219 C = 5735.545294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.362 6.362 3 C 0.511 3.489 4 O -0.504 6.504 5 C -0.240 4.240 6 C 0.070 3.930 7 C -0.099 4.099 8 N 0.029 4.971 9 O -0.304 6.304 10 O -0.231 6.231 11 C 0.054 3.946 12 C -0.264 4.264 13 H 0.143 0.857 14 C 0.058 3.942 15 N -0.691 5.691 16 Si 0.909 3.091 17 H -0.244 1.244 18 H -0.266 1.266 19 H -0.230 1.230 20 C -0.164 4.164 21 C 0.012 3.988 22 Br -0.038 7.038 23 H 0.058 0.942 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.146 0.854 27 H 0.315 0.685 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 5.834 -1.062 10.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.279 6.279 3 C 0.358 3.642 4 O -0.393 6.393 5 C -0.246 4.246 6 C 0.050 3.950 7 C -0.196 4.196 8 N 0.468 4.532 9 O -0.461 6.461 10 O -0.405 6.405 11 C 0.047 3.953 12 C -0.288 4.288 13 H 0.160 0.840 14 C -0.178 4.178 15 N -0.308 5.308 16 Si 0.730 3.270 17 H -0.168 1.168 18 H -0.192 1.192 19 H -0.152 1.152 20 C -0.185 4.185 21 C -0.069 4.069 22 Br 0.048 6.952 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.164 0.836 27 H 0.128 0.872 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.803 7.020 -1.071 11.310 hybrid contribution 0.134 -0.237 -0.360 0.451 sum -8.669 6.783 -1.431 11.100 Atomic orbital electron populations 1.23129 0.77011 1.03019 1.02143 1.86544 1.22689 1.33616 1.85092 1.21035 0.88858 0.81185 0.73142 1.90921 1.66596 1.34697 1.47118 1.17695 0.88577 0.91729 1.26565 1.20505 0.91132 0.98575 0.84826 1.19578 0.89586 0.82064 1.28409 1.49851 1.02670 1.03113 0.97602 1.96139 1.73245 1.13684 1.63048 1.96145 0.90480 1.95596 1.58274 1.17053 0.93632 0.88704 0.95927 1.22520 0.90515 1.04491 1.11306 0.83974 1.28208 0.95570 0.96315 0.97728 1.68915 1.10866 1.23175 1.27851 0.86257 0.81173 0.80196 0.79351 1.16823 1.19158 1.15224 1.21112 0.90751 0.97937 1.08714 1.21479 0.93623 0.90719 1.01095 1.96621 1.72220 1.29245 1.97067 0.92280 0.88604 0.92253 0.83595 0.87166 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 15 2 O -0.36 -6.00 9.79 -40.41 -0.40 -6.39 15 3 C 0.51 9.58 7.90 34.81 0.27 9.86 15 4 O -0.50 -9.78 13.22 -19.19 -0.25 -10.03 15 5 C -0.24 -4.79 5.90 -104.64 -0.62 -5.40 15 6 C 0.07 1.45 9.08 -39.64 -0.36 1.09 15 7 C -0.10 -2.24 6.89 -79.50 -0.55 -2.79 15 8 N 0.03 0.73 4.98 34.18 0.17 0.90 15 9 O -0.30 -7.65 19.14 -31.57 -0.60 -8.25 15 10 O -0.23 -5.95 16.24 -31.57 -0.51 -6.46 15 11 C 0.05 1.17 5.11 -106.78 -0.55 0.63 15 12 C -0.26 -5.87 8.39 -35.32 -0.30 -6.17 15 13 H 0.14 3.45 6.04 -52.49 -0.32 3.13 15 14 C 0.06 1.16 5.65 -15.22 -0.09 1.07 15 15 N -0.69 -13.70 13.89 55.98 0.78 -12.92 15 16 Si 0.91 15.76 24.64 -169.99 -4.19 11.58 15 17 H -0.24 -3.94 6.65 56.52 0.38 -3.56 15 18 H -0.27 -4.31 7.11 56.52 0.40 -3.91 15 19 H -0.23 -4.27 6.90 56.52 0.39 -3.88 15 20 C -0.16 -3.28 6.93 -38.72 -0.27 -3.55 15 21 C 0.01 0.23 6.25 -39.17 -0.24 -0.02 15 22 Br -0.04 -0.68 30.35 -68.01 -2.06 -2.75 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.10 0.87 8.14 -51.92 -0.42 0.44 15 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 26 H 0.15 2.85 7.08 -52.48 -0.37 2.48 15 27 H 0.32 5.30 8.27 -40.82 -0.34 4.96 15 28 H 0.14 2.50 4.86 -52.49 -0.26 2.25 15 LS Contribution 276.21 15.07 4.16 4.16 Total: -1.00 -25.54 276.21 -5.91 -31.45 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -1.38 Total: 2.44 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.62 Total: -3.73 kcal Atomic # 7 Polarization: -12.97 SS G_CDS: 0.95 Total: -12.02 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -1.77 Total: -31.14 kcal Atomic # 14 Polarization: 15.76 SS G_CDS: -4.19 Total: 11.58 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -2.06 Total: -2.75 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -25.54 -5.91 -31.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000199820807.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.459 kcal (2) G-P(sol) polarization free energy of solvation -25.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds