Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46982 * 190.52094 * 3 2 1 5 5 C 1.36977 * 119.99669 * 82.91014 * 4 3 2 6 6 H 1.08004 * 119.99801 * 166.27771 * 5 4 3 7 7 C 1.38975 * 120.00141 * 346.28046 * 5 4 3 8 8 N 1.31408 * 119.99828 * 359.76896 * 7 5 4 9 9 Si 1.86798 * 119.99893 * 179.77335 * 7 5 4 10 10 H 1.48503 * 109.47388 * 59.99764 * 9 7 5 11 11 H 1.48499 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47416 * 299.99798 * 9 7 5 13 13 C 1.34775 * 120.00227 * 262.91483 * 4 3 2 14 14 O 1.21638 * 119.99939 * 186.76530 * 13 4 3 15 15 C 1.47331 * 120.00120 * 6.75989 * 13 4 3 16 16 C 1.41366 * 126.41642 * 16.83760 * 15 13 4 17 17 N 1.30476 * 108.06743 * 179.71839 * 16 15 13 18 18 N 1.39932 * 108.93301 * 0.43631 * 17 16 15 19 19 C 1.40179 * 125.76594 * 179.80993 * 18 17 16 20 20 C 1.38834 * 120.07037 * 179.41821 * 19 18 17 21 21 C 1.38114 * 119.94203 * 180.25454 * 20 19 18 22 22 C 1.38296 * 120.09503 * 0.04871 * 21 20 19 23 23 C 1.38254 * 120.14420 * 359.95207 * 22 21 20 24 24 C 1.38244 * 120.05282 * 0.02562 * 23 22 21 25 25 Cl 1.73602 * 120.04255 * 179.97438 * 24 23 22 26 26 C 1.34549 * 108.46653 * 359.55352 * 18 17 16 27 27 H 4.40641 * 5.51476 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.46586 * 70.52612 * 3 2 1 29 29 H 1.08998 * 109.47245 * 310.52644 * 3 2 1 30 30 H 0.97009 * 119.99629 * 179.97438 * 8 7 5 31 31 H 1.07994 * 125.96482 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.03345 * 0.25745 * 20 19 18 33 33 H 1.08004 * 119.95058 * 180.02562 * 21 20 19 34 34 H 1.08003 * 119.93061 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.97018 * 180.02562 * 23 22 21 36 36 H 1.08000 * 126.32053 * 180.24098 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3589 0.2522 5 6 3.2237 1.8267 1.5364 6 1 3.7816 2.7277 1.7451 7 6 2.5972 1.1421 2.5709 8 7 1.9146 0.0485 2.3164 9 14 2.7253 1.7767 4.3231 10 1 2.1504 3.1439 4.3978 11 1 1.9745 0.8743 5.2326 12 1 4.1523 1.8169 4.7321 13 6 3.4937 2.1480 -0.7793 14 8 4.0131 3.2273 -0.5670 15 6 3.2583 1.7035 -2.1641 16 6 2.3907 0.6664 -2.5766 17 7 2.4531 0.5798 -3.8769 18 7 3.3575 1.5357 -4.3528 19 6 3.6952 1.7465 -5.6968 20 6 4.6023 2.7405 -6.0385 21 6 4.9291 2.9494 -7.3641 22 6 4.3535 2.1705 -8.3513 23 6 3.4498 1.1797 -8.0153 24 6 3.1186 0.9651 -6.6903 25 17 1.9833 -0.2787 -6.2687 26 6 3.8440 2.2220 -3.3027 27 1 -1.0502 -0.0004 0.0001 28 1 3.0094 -0.3418 -0.9689 29 1 3.0097 -0.6669 0.7811 30 1 1.4776 -0.4296 3.0386 31 1 1.7795 0.0556 -1.9288 32 1 5.0519 3.3498 -5.2686 33 1 5.6350 3.7223 -7.6301 34 1 4.6107 2.3365 -9.3871 35 1 3.0022 0.5728 -8.7885 36 1 4.5604 3.0292 -3.3425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225601970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = 172.224754 kcal Electronic energy + Delta-G solvation = -24585.561698 eV Core-core repulsion = 20873.386696 eV Total energy + Delta-G solvation = -3712.175003 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43255 -39.37212 -38.20516 -36.36924 -35.31333 -33.69388 -31.99252 -31.33215 -31.17893 -29.93438 -29.08836 -26.56279 -25.08284 -23.61338 -23.24855 -21.30364 -20.79572 -19.16160 -18.16733 -17.93323 -16.75754 -16.49620 -16.02960 -15.41225 -15.25233 -15.09076 -14.40796 -14.32985 -14.08091 -14.02714 -13.94012 -13.28399 -12.87656 -12.68278 -12.36122 -12.25632 -11.74616 -11.66770 -11.59141 -11.36662 -11.20497 -11.02121 -10.56395 -10.42399 -10.21085 -9.96334 -9.54808 -9.24915 -9.15789 -8.84029 -8.72290 -8.51541 -7.96034 -7.93633 -6.28041 -3.88492 0.57752 0.85005 2.08023 2.12277 2.43765 2.67385 3.20485 3.23386 3.26745 3.38628 3.79955 3.98666 4.15411 4.22808 4.36481 4.53150 4.74235 4.83271 4.92061 5.02537 5.09801 5.19279 5.35578 5.40724 5.55809 5.62318 5.83349 5.85403 5.94924 6.04116 6.10886 6.32065 6.37057 6.78105 6.96499 7.12761 7.14665 7.50699 7.79696 8.00712 8.41311 8.86978 9.09448 9.31688 9.87526 10.63511 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.003291 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.326836 B = 8505.856054 C = 9549.507881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.097 4.097 3 C 0.220 3.780 4 N -0.432 5.432 5 C -0.300 4.300 6 H 0.107 0.893 7 C 0.027 3.973 8 N -0.873 5.873 9 Si 0.935 3.065 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.517 3.483 14 O -0.590 6.590 15 C -0.231 4.231 16 C 0.066 3.934 17 N -0.278 5.278 18 N -0.327 5.327 19 C 0.181 3.819 20 C -0.136 4.136 21 C -0.088 4.088 22 C -0.127 4.127 23 C -0.090 4.090 24 C -0.050 4.050 25 Cl -0.026 7.026 26 C 0.090 3.910 27 H 0.198 0.802 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.270 0.730 31 H 0.209 0.791 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -0.670 -18.560 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.100 4.100 3 C 0.097 3.903 4 N -0.148 5.148 5 C -0.427 4.427 6 H 0.125 0.875 7 C -0.175 4.175 8 N -0.513 5.513 9 Si 0.762 3.238 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.306 3.694 14 O -0.476 6.476 15 C -0.245 4.245 16 C -0.122 4.122 17 N -0.095 5.095 18 N -0.101 5.101 19 C 0.086 3.914 20 C -0.157 4.157 21 C -0.107 4.107 22 C -0.146 4.146 23 C -0.109 4.109 24 C -0.079 4.079 25 Cl 0.003 6.997 26 C -0.054 4.054 27 H 0.215 0.785 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.572 -1.006 -19.275 19.472 hybrid contribution -0.249 0.495 1.808 1.892 sum 2.324 -0.511 -17.466 17.628 Atomic orbital electron populations 1.24247 0.95356 1.01891 1.07569 1.22901 0.94159 0.98569 0.94324 1.18994 0.84292 0.86502 1.00521 1.43501 1.54770 1.10912 1.05620 1.19761 1.30814 1.10728 0.81390 0.87493 1.25350 0.95429 0.96133 1.00607 1.69893 1.32277 1.16638 1.32476 0.85849 0.78461 0.78626 0.80899 1.19891 1.20927 1.19823 1.16894 0.85035 0.84939 0.82530 1.90603 1.48929 1.23091 1.84975 1.20796 1.05657 1.02656 0.95382 1.25443 0.97594 0.96873 0.92251 1.77760 1.09992 1.10002 1.11760 1.45615 1.33520 1.27535 1.03467 1.17428 0.97106 0.96585 0.80284 1.20928 0.98654 0.97964 0.98153 1.21049 0.99064 0.99133 0.91440 1.21146 0.97431 0.95891 1.00087 1.21005 0.97894 0.98475 0.93573 1.20672 0.98286 0.95734 0.93257 1.98420 1.57866 1.50138 1.93269 1.22824 0.99287 0.97788 0.85521 0.78529 0.91625 0.85907 0.91838 0.77463 0.84119 0.84474 0.84717 0.84294 0.79788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.65 19.23 29.55 0.57 -5.09 16 2 C -0.10 -2.17 8.50 -37.12 -0.32 -2.49 16 3 C 0.22 4.92 4.76 -6.83 -0.03 4.89 16 4 N -0.43 -10.94 2.60 -119.18 -0.31 -11.25 16 5 C -0.30 -8.12 9.47 -14.98 -0.14 -8.26 16 6 H 0.11 3.02 7.22 -52.48 -0.38 2.64 16 7 C 0.03 0.69 5.36 -17.46 -0.09 0.60 16 8 N -0.87 -22.07 7.96 55.50 0.44 -21.63 16 9 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.52 12.83 7.59 -12.56 -0.10 12.74 16 14 O -0.59 -16.22 16.56 5.24 0.09 -16.13 16 15 C -0.23 -4.79 5.76 -105.05 -0.60 -5.39 16 16 C 0.07 1.28 9.56 -16.94 -0.16 1.12 16 17 N -0.28 -5.05 9.22 30.88 0.28 -4.77 16 18 N -0.33 -5.44 3.77 -10.16 -0.04 -5.48 16 19 C 0.18 2.48 6.68 -83.56 -0.56 1.92 16 20 C -0.14 -1.44 9.45 -39.41 -0.37 -1.81 16 21 C -0.09 -0.70 10.04 -39.61 -0.40 -1.10 16 22 C -0.13 -0.96 10.04 -39.55 -0.40 -1.35 16 23 C -0.09 -0.84 9.83 -39.57 -0.39 -1.23 16 24 C -0.05 -0.64 6.34 -39.32 -0.25 -0.89 16 25 Cl -0.03 -0.37 25.87 -51.86 -1.34 -1.71 16 26 C 0.09 1.57 10.65 -16.40 -0.17 1.40 16 27 H 0.20 3.40 7.80 -54.08 -0.42 2.98 16 28 H 0.07 1.31 4.77 -51.93 -0.25 1.06 16 29 H 0.12 2.90 6.37 -51.93 -0.33 2.57 16 30 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 31 H 0.21 3.98 3.71 -52.49 -0.19 3.79 16 32 H 0.14 1.30 6.72 -52.49 -0.35 0.95 16 33 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.19 2.72 7.01 -52.49 -0.37 2.35 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -31.68 326.18 -7.10 -38.78 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -2.70 Total: 6.80 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -3.41 Total: -4.95 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.38 Total: -43.12 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.09 Total: -16.13 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.34 Total: -1.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.68 -7.10 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225601970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.005 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 172.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds