Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46982 * 190.52094 * 3 2 1 5 5 C 1.36977 * 119.99669 * 82.91014 * 4 3 2 6 6 H 1.08004 * 119.99801 * 166.27771 * 5 4 3 7 7 C 1.38975 * 120.00141 * 346.28046 * 5 4 3 8 8 N 1.31408 * 119.99828 * 359.76896 * 7 5 4 9 9 Si 1.86798 * 119.99893 * 179.77335 * 7 5 4 10 10 H 1.48503 * 109.47388 * 59.99764 * 9 7 5 11 11 H 1.48499 * 109.47140 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47416 * 299.99798 * 9 7 5 13 13 C 1.34775 * 120.00227 * 262.91483 * 4 3 2 14 14 O 1.21638 * 119.99939 * 186.76530 * 13 4 3 15 15 C 1.47331 * 120.00120 * 6.75989 * 13 4 3 16 16 C 1.41366 * 126.41642 * 16.83760 * 15 13 4 17 17 N 1.30476 * 108.06743 * 179.71839 * 16 15 13 18 18 N 1.39932 * 108.93301 * 0.43631 * 17 16 15 19 19 C 1.40179 * 125.76594 * 179.80993 * 18 17 16 20 20 C 1.38834 * 120.07037 * 179.41821 * 19 18 17 21 21 C 1.38114 * 119.94203 * 180.25454 * 20 19 18 22 22 C 1.38296 * 120.09503 * 0.04871 * 21 20 19 23 23 C 1.38254 * 120.14420 * 359.95207 * 22 21 20 24 24 C 1.38244 * 120.05282 * 0.02562 * 23 22 21 25 25 Cl 1.73602 * 120.04255 * 179.97438 * 24 23 22 26 26 C 1.34549 * 108.46653 * 359.55352 * 18 17 16 27 27 H 4.40641 * 5.51476 * 180.02562 * 4 1 2 28 28 H 1.09004 * 109.46586 * 70.52612 * 3 2 1 29 29 H 1.08998 * 109.47245 * 310.52644 * 3 2 1 30 30 H 0.97009 * 119.99629 * 179.97438 * 8 7 5 31 31 H 1.07994 * 125.96482 * 359.97438 * 16 15 13 32 32 H 1.08001 * 120.03345 * 0.25745 * 20 19 18 33 33 H 1.08004 * 119.95058 * 180.02562 * 21 20 19 34 34 H 1.08003 * 119.93061 * 179.97438 * 22 21 20 35 35 H 1.08000 * 119.97018 * 180.02562 * 23 22 21 36 36 H 1.08000 * 126.32053 * 180.24098 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3589 0.2522 5 6 3.2237 1.8267 1.5364 6 1 3.7816 2.7277 1.7451 7 6 2.5972 1.1421 2.5709 8 7 1.9146 0.0485 2.3164 9 14 2.7253 1.7767 4.3231 10 1 2.1504 3.1439 4.3978 11 1 1.9745 0.8743 5.2326 12 1 4.1523 1.8169 4.7321 13 6 3.4937 2.1480 -0.7793 14 8 4.0131 3.2273 -0.5670 15 6 3.2583 1.7035 -2.1641 16 6 2.3907 0.6664 -2.5766 17 7 2.4531 0.5798 -3.8769 18 7 3.3575 1.5357 -4.3528 19 6 3.6952 1.7465 -5.6968 20 6 4.6023 2.7405 -6.0385 21 6 4.9291 2.9494 -7.3641 22 6 4.3535 2.1705 -8.3513 23 6 3.4498 1.1797 -8.0153 24 6 3.1186 0.9651 -6.6903 25 17 1.9833 -0.2787 -6.2687 26 6 3.8440 2.2220 -3.3027 27 1 -1.0502 -0.0004 0.0001 28 1 3.0094 -0.3418 -0.9689 29 1 3.0097 -0.6669 0.7811 30 1 1.4776 -0.4296 3.0386 31 1 1.7795 0.0556 -1.9288 32 1 5.0519 3.3498 -5.2686 33 1 5.6350 3.7223 -7.6301 34 1 4.6107 2.3365 -9.3871 35 1 3.0022 0.5728 -8.7885 36 1 4.5604 3.0292 -3.3425 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225601970.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = 154.857429 kcal Electronic energy + Delta-G solvation = -24586.314802 eV Core-core repulsion = 20873.386696 eV Total energy + Delta-G solvation = -3712.928106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 329.067 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.78491 -40.52406 -39.76316 -37.33864 -37.22161 -34.92217 -33.73774 -33.15895 -32.05811 -31.26081 -30.25861 -28.31688 -26.84908 -24.87248 -24.22440 -22.68001 -21.97172 -20.70664 -19.76043 -19.42543 -18.34106 -17.80180 -17.28779 -16.66537 -16.62033 -16.45941 -15.93640 -15.72182 -15.68046 -15.27091 -14.97397 -14.58285 -14.41963 -14.17171 -14.03550 -13.42608 -13.16488 -13.01504 -12.83587 -12.55945 -12.53150 -12.42602 -12.37524 -12.13932 -11.53329 -11.32258 -11.23284 -10.97297 -10.58314 -10.37571 -10.19878 -9.90417 -9.86168 -9.15633 -8.20903 -5.91218 -0.41093 0.09719 0.85382 1.04534 1.16603 1.33150 1.43089 1.47480 1.53216 2.06772 2.24648 2.38863 2.53259 2.60141 3.06817 3.15993 3.41842 3.62730 3.80381 3.91321 3.95427 4.12836 4.19905 4.26130 4.33539 4.44304 4.54645 4.72846 4.73351 4.99136 5.15703 5.17911 5.33278 5.35243 5.45101 5.46874 5.62116 5.95911 6.04623 6.38995 6.48390 7.12366 7.17375 7.40083 7.95883 8.67230 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.023676 B = 0.003291 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.326836 B = 8505.856054 C = 9549.507881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.131 4.131 3 C 0.228 3.772 4 N -0.444 5.444 5 C -0.341 4.341 6 H 0.083 0.917 7 C -0.001 4.001 8 N -0.877 5.877 9 Si 0.994 3.006 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.268 1.268 13 C 0.512 3.488 14 O -0.630 6.630 15 C -0.270 4.270 16 C 0.061 3.939 17 N -0.281 5.281 18 N -0.315 5.315 19 C 0.131 3.869 20 C -0.135 4.135 21 C -0.080 4.080 22 C -0.104 4.104 23 C -0.093 4.093 24 C -0.066 4.066 25 Cl -0.049 7.049 26 C 0.113 3.887 27 H 0.231 0.769 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.273 0.727 31 H 0.205 0.795 32 H 0.151 0.849 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.160 0.840 36 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -0.131 -21.347 21.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.134 4.134 3 C 0.106 3.894 4 N -0.160 5.160 5 C -0.468 4.468 6 H 0.101 0.899 7 C -0.203 4.203 8 N -0.515 5.515 9 Si 0.818 3.182 10 H -0.205 1.205 11 H -0.196 1.196 12 H -0.193 1.193 13 C 0.303 3.697 14 O -0.519 6.519 15 C -0.284 4.284 16 C -0.126 4.126 17 N -0.099 5.099 18 N -0.088 5.088 19 C 0.038 3.962 20 C -0.156 4.156 21 C -0.098 4.098 22 C -0.122 4.122 23 C -0.112 4.112 24 C -0.095 4.095 25 Cl -0.020 7.020 26 C -0.034 4.034 27 H 0.247 0.753 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.221 0.779 32 H 0.169 0.831 33 H 0.193 0.807 34 H 0.194 0.806 35 H 0.178 0.822 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.982 -0.517 -22.122 22.328 hybrid contribution -0.307 0.388 2.323 2.376 sum 2.675 -0.129 -19.798 19.978 Atomic orbital electron populations 1.25066 0.96271 1.00303 1.06039 1.23071 0.94623 1.00003 0.95670 1.18901 0.84815 0.84855 1.00871 1.43641 1.55075 1.11939 1.05323 1.19708 1.32863 1.11176 0.83079 0.89941 1.26030 0.94604 0.96129 1.03490 1.70039 1.31594 1.16576 1.33295 0.84977 0.78633 0.77816 0.76772 1.20473 1.19587 1.19326 1.17449 0.83872 0.84404 0.84008 1.90540 1.50682 1.24703 1.86004 1.20448 1.08728 1.05173 0.94037 1.25255 0.97819 0.96880 0.92650 1.77723 1.10608 1.10660 1.10951 1.45783 1.32148 1.26249 1.04663 1.17924 1.00085 0.99373 0.78798 1.21264 0.97509 0.96860 0.99963 1.21549 0.98781 0.99425 0.90073 1.21700 0.94865 0.93586 1.02075 1.21369 0.98136 0.99200 0.92466 1.20989 0.98422 0.95509 0.94553 1.98409 1.58831 1.51204 1.93554 1.23099 0.98266 0.97178 0.84871 0.75285 0.89631 0.87657 0.91654 0.77882 0.83112 0.80730 0.80611 0.82196 0.77346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.67 19.23 74.32 1.43 -9.24 16 2 C -0.13 -6.00 8.50 31.13 0.26 -5.74 16 3 C 0.23 10.66 4.76 84.58 0.40 11.06 16 4 N -0.44 -23.65 2.60 -649.21 -1.69 -25.34 16 5 C -0.34 -19.40 9.47 84.07 0.80 -18.60 16 6 H 0.08 4.97 7.22 -2.91 -0.02 4.94 16 7 C 0.00 -0.04 5.36 84.93 0.45 0.41 16 8 N -0.88 -44.99 7.96 21.67 0.17 -44.81 16 9 Si 0.99 42.55 29.55 68.60 2.03 44.58 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 13 C 0.51 26.71 7.59 86.64 0.66 27.37 16 14 O -0.63 -36.43 16.56 -4.15 -0.07 -36.50 16 15 C -0.27 -11.55 5.76 -20.14 -0.12 -11.67 16 16 C 0.06 2.43 9.56 85.66 0.82 3.25 16 17 N -0.28 -10.36 9.22 -56.21 -0.52 -10.87 16 18 N -0.32 -10.37 3.77 -186.07 -0.70 -11.07 16 19 C 0.13 3.39 6.68 38.11 0.25 3.64 16 20 C -0.14 -2.46 9.45 22.38 0.21 -2.25 16 21 C -0.08 -0.88 10.04 22.25 0.22 -0.65 16 22 C -0.10 -1.02 10.04 22.29 0.22 -0.80 16 23 C -0.09 -1.41 9.83 22.27 0.22 -1.19 16 24 C -0.07 -1.57 6.34 22.44 0.14 -1.43 16 25 Cl -0.05 -1.35 25.87 -2.72 -0.07 -1.42 16 26 C 0.11 3.95 10.65 84.25 0.90 4.84 16 27 H 0.23 7.52 7.80 -4.41 -0.03 7.48 16 28 H 0.09 3.59 4.77 -2.38 -0.01 3.57 16 29 H 0.11 5.21 6.37 -2.39 -0.02 5.20 16 30 H 0.27 13.33 8.31 -92.70 -0.77 12.56 16 31 H 0.21 8.12 3.71 -2.91 -0.01 8.11 16 32 H 0.15 2.36 6.72 -2.91 -0.02 2.34 16 33 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.18 0.39 8.06 -2.91 -0.02 0.36 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 36 H 0.21 6.02 7.01 -2.91 -0.02 6.00 16 Total: -1.00 -72.89 326.18 7.18 -65.72 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.15 Total: 20.72 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.88 Total: -1.00 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -2.74 Total: -92.10 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -0.07 Total: -36.50 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -72.89 7.18 -65.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225601970.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.574 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds