Wall clock time and date at job start Tue Mar 31 2020 05:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30817 * 1 3 3 Si 1.86808 * 119.99734 * 2 1 4 4 H 1.48500 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47117 * 299.99748 * 3 2 1 6 6 H 1.48498 * 109.47257 * 60.00007 * 3 2 1 7 7 C 1.39944 * 120.00582 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00540 * 197.86434 * 7 2 1 9 9 C 1.41404 * 119.99640 * 17.85482 * 7 2 1 10 10 C 1.40704 * 120.24413 * 204.38062 * 9 7 2 11 11 C 1.37619 * 119.74430 * 180.02562 * 10 9 7 12 12 C 1.38628 * 120.24780 * 0.02562 * 11 10 9 13 13 S 1.76209 * 119.74869 * 179.97438 * 12 11 10 14 14 O 1.42105 * 106.40137 * 203.54128 * 13 12 11 15 15 O 1.42096 * 106.40164 * 336.46270 * 13 12 11 16 16 N 1.65597 * 107.21627 * 90.00287 * 13 12 11 17 17 C 1.46509 * 120.00008 * 65.00038 * 16 13 12 18 18 C 1.53002 * 109.46853 * 164.99783 * 17 16 13 19 19 C 1.53001 * 109.46773 * 179.97438 * 18 17 16 20 20 H 1.08999 * 109.47091 * 55.00379 * 19 18 17 21 21 O 1.42895 * 109.47149 * 295.00092 * 19 18 17 22 22 C 1.50707 * 109.47058 * 175.00105 * 19 18 17 23 23 O 1.20825 * 120.00047 * 114.99606 * 22 19 18 24 24 O 1.34225 * 119.99939 * 295.00086 * 22 19 18 25 25 C 1.38637 * 120.50366 * 0.26037 * 12 11 10 26 26 C 1.37618 * 120.24377 * 359.43637 * 25 12 11 27 27 H 0.97002 * 120.00371 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.13034 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.87543 * 180.02562 * 11 10 9 30 30 H 0.96996 * 120.00271 * 244.99767 * 16 13 12 31 31 H 1.08996 * 109.47023 * 284.99701 * 17 16 13 32 32 H 1.08999 * 109.46900 * 45.00027 * 17 16 13 33 33 H 1.08996 * 109.47239 * 299.99785 * 18 17 16 34 34 H 1.08999 * 109.47168 * 60.00408 * 18 17 16 35 35 H 0.96704 * 114.00074 * 299.99959 * 21 19 18 36 36 H 0.96690 * 117.00188 * 179.97438 * 24 22 19 37 37 H 1.07994 * 119.87886 * 179.70270 * 25 12 11 38 38 H 1.07999 * 120.12764 * 180.27717 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 3.7021 1.3465 0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0489 -1.2343 0.2874 9 6 1.3521 -2.4072 -0.3744 10 6 1.8259 -3.6498 0.0853 11 6 1.1800 -4.8067 -0.2865 12 6 0.0669 -4.7510 -1.1109 13 16 -0.7496 -6.2406 -1.5793 14 8 -1.4383 -5.9572 -2.7895 15 8 0.2111 -7.2804 -1.4569 16 7 -1.9122 -6.5416 -0.4391 17 6 -3.0419 -5.6216 -0.2842 18 6 -4.1391 -6.2959 0.5419 19 6 -5.3186 -5.3349 0.7042 20 1 -5.6555 -5.0041 -0.2782 21 8 -4.9081 -4.2026 1.4732 22 6 -6.4474 -6.0399 1.4113 23 8 -6.7980 -5.6710 2.5071 24 8 -7.0632 -7.0778 0.8237 25 6 -0.4051 -3.5328 -1.5746 26 6 0.2213 -2.3627 -1.2107 27 1 -0.4851 0.8400 0.0004 28 1 2.6932 -3.6954 0.7274 29 1 1.5416 -5.7616 0.0655 30 1 -1.8454 -7.3269 0.1262 31 1 -2.7073 -4.7178 0.2249 32 1 -3.4353 -5.3607 -1.2667 33 1 -4.4737 -7.1997 0.0328 34 1 -3.7457 -6.5567 1.5244 35 1 -4.5952 -4.4228 2.3613 36 1 -7.7812 -7.4983 1.3161 37 1 -1.2702 -3.5015 -2.2203 38 1 -0.1508 -1.4144 -1.5693 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230065206.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:35 Heat of formation + Delta-G solvation = -212.672641 kcal Electronic energy + Delta-G solvation = -25548.410134 eV Core-core repulsion = 21481.986763 eV Total energy + Delta-G solvation = -4066.423371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79023 -37.77878 -37.57208 -36.56567 -36.39529 -35.21402 -35.11705 -34.04269 -31.24891 -30.26204 -29.46921 -26.82926 -25.82318 -22.70851 -21.79268 -21.48081 -21.13223 -18.98212 -18.62228 -17.91885 -17.62205 -17.15858 -16.62136 -16.26485 -16.07316 -15.65713 -15.48772 -15.17934 -14.40299 -14.14031 -13.88227 -13.60547 -13.37258 -13.21357 -12.62552 -12.42489 -12.19946 -12.12454 -11.92389 -11.82092 -11.70610 -11.47533 -11.42424 -11.36862 -11.30061 -11.20009 -11.18904 -10.90837 -10.40106 -10.35576 -9.77804 -9.66102 -9.50934 -9.06959 -7.96599 -7.70699 -7.14737 -4.80473 1.22008 1.77018 2.24417 2.58174 2.87779 2.90160 2.92912 2.95684 3.65725 3.66687 3.91262 4.22150 4.45017 4.50006 4.61567 4.71408 4.97151 5.19548 5.24712 5.37935 5.43949 5.70492 5.93885 6.05537 6.09079 6.11486 6.17067 6.67707 6.70403 6.90376 7.04533 7.15537 7.24563 7.34068 7.42336 7.50436 7.63219 7.77042 7.96642 8.31759 8.51156 8.64733 9.76501 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003574 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.215332 B = 7833.329487 C = 9745.915594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.434 4.434 8 H 0.088 0.912 9 C 0.139 3.861 10 C -0.239 4.239 11 C 0.002 3.998 12 C -0.788 4.788 13 S 2.695 3.305 14 O -0.984 6.984 15 O -0.986 6.986 16 N -1.128 6.128 17 C 0.124 3.876 18 C -0.153 4.153 19 C 0.123 3.877 20 H 0.144 0.856 21 O -0.524 6.524 22 C 0.451 3.549 23 O -0.510 6.510 24 O -0.512 6.512 25 C -0.017 4.017 26 C -0.182 4.182 27 H 0.289 0.711 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.409 0.591 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.387 0.613 36 H 0.410 0.590 37 H 0.103 0.897 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 -7.739 2.743 12.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.461 4.461 8 H 0.106 0.894 9 C 0.136 3.864 10 C -0.260 4.260 11 C -0.018 4.018 12 C -0.884 4.884 13 S 2.794 3.206 14 O -0.974 6.974 15 O -0.977 6.977 16 N -0.884 5.884 17 C -0.002 4.002 18 C -0.193 4.193 19 C 0.061 3.939 20 H 0.162 0.838 21 O -0.330 6.330 22 C 0.293 3.707 23 O -0.397 6.397 24 O -0.324 6.324 25 C -0.037 4.037 26 C -0.202 4.202 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.241 0.759 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.237 0.763 36 H 0.269 0.731 37 H 0.121 0.879 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.125 -7.371 1.443 12.607 hybrid contribution 0.029 0.444 1.716 1.772 sum -10.095 -6.927 3.159 12.644 Atomic orbital electron populations 1.69815 1.07884 1.30327 1.30520 1.26132 0.94901 1.02124 0.91862 0.86116 0.81034 0.79909 0.79022 1.18007 1.19211 1.19524 1.19981 0.98492 0.91172 1.36501 0.89423 1.17857 0.90048 0.92125 0.86417 1.21045 1.04450 0.92731 1.07784 1.20151 0.92187 0.97232 0.92219 1.29113 1.16567 1.15813 1.26926 1.01178 0.72282 0.74284 0.72899 1.93483 1.74462 1.86283 1.43177 1.93491 1.60499 1.56983 1.86735 1.55748 1.38976 1.35888 1.57791 1.21114 0.85651 0.92597 1.00839 1.22442 0.94954 0.99262 1.02609 1.21496 0.89339 0.87068 0.96035 0.83843 1.86746 1.84807 1.30053 1.31356 1.24730 0.83399 0.77775 0.84825 1.90751 1.63908 1.63884 1.21171 1.84558 1.50028 1.45164 1.52685 1.20259 0.96792 0.91670 0.94963 1.21335 1.00016 0.96879 1.01973 0.89981 0.88246 0.87849 0.75871 0.90119 0.90066 0.88780 0.90129 0.76289 0.73081 0.87864 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.85 10.95 55.55 0.61 -17.24 16 2 C 0.07 1.64 5.14 -17.35 -0.09 1.55 16 3 Si 0.92 16.86 29.60 -169.99 -5.03 11.83 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 6 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.43 -10.53 9.05 -37.74 -0.34 -10.87 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 9 C 0.14 3.48 5.57 -106.83 -0.60 2.88 16 10 C -0.24 -5.58 9.80 -38.88 -0.38 -5.96 16 11 C 0.00 0.05 9.49 -39.66 -0.38 -0.33 16 12 C -0.79 -16.80 5.97 -39.29 -0.23 -17.04 16 13 S 2.69 49.42 5.73 -107.50 -0.62 48.80 16 14 O -0.98 -20.15 16.72 -57.17 -0.96 -21.10 16 15 O -0.99 -20.09 17.26 -57.17 -0.99 -21.08 16 16 N -1.13 -15.27 6.00 -10.61 -0.06 -15.34 16 17 C 0.12 1.52 6.12 -4.04 -0.02 1.49 16 18 C -0.15 -1.33 5.01 -26.73 -0.13 -1.47 16 19 C 0.12 1.11 3.49 -27.88 -0.10 1.01 16 20 H 0.14 1.13 8.14 -51.93 -0.42 0.70 16 21 O -0.52 -5.82 12.53 -55.13 -0.69 -6.51 16 22 C 0.45 4.22 7.65 36.01 0.28 4.50 16 23 O -0.51 -6.39 17.08 -25.46 -0.43 -6.83 16 24 O -0.51 -3.48 13.39 -39.25 -0.53 -4.01 16 25 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 26 C -0.18 -4.46 8.70 -38.87 -0.34 -4.79 16 27 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 28 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 29 H 0.10 2.04 7.60 -52.49 -0.40 1.64 16 30 H 0.41 4.46 8.65 -34.47 -0.30 4.16 16 31 H 0.08 1.09 7.82 -51.93 -0.41 0.68 16 32 H 0.08 1.00 7.75 -51.93 -0.40 0.60 16 33 H 0.09 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.39 3.39 8.79 45.56 0.40 3.79 16 36 H 0.41 1.16 9.10 45.56 0.41 1.57 16 37 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 38 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -33.31 348.20 -8.81 -42.13 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -2.65 Total: 13.87 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: -2.71 Total: -29.77 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.54 Total: -32.58 kcal Atomic # 8 Polarization: -55.93 SS G_CDS: -3.59 Total: -59.53 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.62 Total: 48.80 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.31 -8.81 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230065206.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.547 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds