Wall clock time and date at job start Tue Mar 31 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47123 * 2 1 4 4 C 1.53008 * 109.46897 * 239.99923 * 2 1 3 5 5 N 1.46503 * 109.47491 * 120.00155 * 2 1 3 6 6 C 1.46495 * 119.99906 * 242.25238 * 5 2 1 7 7 C 1.50695 * 109.47281 * 262.13971 * 6 5 2 8 8 H 1.07995 * 120.00259 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99936 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99898 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99719 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47529 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47072 * 120.00051 * 11 9 7 14 14 H 1.48497 * 109.47130 * 239.99581 * 11 9 7 15 15 C 1.34781 * 119.99731 * 62.25054 * 5 2 1 16 16 O 1.21624 * 120.00128 * 1.91366 * 15 5 2 17 17 C 1.47254 * 119.99706 * 181.90780 * 15 5 2 18 18 C 1.47067 * 127.20407 * 350.85445 * 17 15 5 19 19 C 1.34135 * 105.97042 * 179.97438 * 18 17 15 20 20 O 1.34262 * 109.16611 * 0.02562 * 19 18 17 21 21 C 1.33685 * 110.91274 * 359.97438 * 20 19 18 22 22 Br 1.89100 * 125.82322 * 180.26994 * 21 20 19 23 23 H 1.08997 * 109.47065 * 302.84716 * 1 2 3 24 24 H 1.08997 * 109.47199 * 62.85077 * 1 2 3 25 25 H 1.09004 * 109.47070 * 182.85226 * 1 2 3 26 26 H 1.09001 * 109.47037 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46982 * 300.00237 * 3 2 1 28 28 H 1.09003 * 109.47198 * 60.00329 * 3 2 1 29 29 H 1.08995 * 109.47212 * 305.74840 * 4 2 1 30 30 H 1.09003 * 109.46664 * 65.74832 * 4 2 1 31 31 H 1.09004 * 109.46827 * 185.74808 * 4 2 1 32 32 H 1.08999 * 109.47494 * 22.14159 * 6 5 2 33 33 H 1.09007 * 109.46716 * 142.13853 * 6 5 2 34 34 H 0.96998 * 119.99298 * 180.02562 * 10 9 7 35 35 H 1.07998 * 127.01469 * 359.97438 * 18 17 15 36 36 H 1.07998 * 125.41451 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.8195 0.0349 2.1851 7 6 4.2820 -0.2374 1.9444 8 1 4.5845 -0.8858 1.1354 9 6 5.2338 0.3411 2.7570 10 7 4.8654 1.1311 3.7418 11 14 7.0466 0.0030 2.4590 12 1 7.1954 -0.9118 1.2988 13 1 7.7485 1.2806 2.1758 14 1 7.6371 -0.6291 3.6660 15 6 1.7307 -1.9935 1.3867 16 8 1.0952 -2.6048 0.5490 17 6 2.1859 -2.6768 2.6091 18 6 3.1106 -2.1560 3.6272 19 6 3.2271 -3.1231 4.5493 20 8 2.4679 -4.1700 4.1884 21 6 1.8374 -3.9271 3.0349 22 35 0.6581 -5.1096 2.1478 23 1 -0.3633 0.5574 0.8633 24 1 -0.3633 0.4689 -0.9144 25 1 -0.3633 -1.0264 0.0511 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.5950 -1.7149 -1.3023 30 1 1.7630 -0.1514 -2.1363 31 1 3.1251 -0.8113 -1.1993 32 1 2.6291 1.1042 2.0931 33 1 2.5481 -0.2976 3.1871 34 1 5.5351 1.5383 4.3132 35 1 3.5966 -1.1916 3.6315 36 1 3.8355 -3.0686 5.4399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000240465929.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:37 Heat of formation + Delta-G solvation = 8.966233 kcal Electronic energy + Delta-G solvation = -21566.209371 eV Core-core repulsion = 18292.925591 eV Total energy + Delta-G solvation = -3273.283780 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.041 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.01422 -39.38866 -36.02309 -34.18146 -32.34009 -31.70474 -31.11809 -28.34598 -27.77132 -26.72618 -26.29751 -23.40619 -22.62921 -21.15375 -19.43317 -18.21143 -16.87793 -16.44023 -15.85812 -15.61536 -15.44326 -14.53897 -14.20155 -14.02787 -13.34869 -13.10596 -12.96785 -12.74631 -12.44629 -12.03346 -11.75843 -11.59088 -11.55144 -11.07625 -11.06037 -11.00697 -10.90006 -10.55565 -10.51223 -10.21905 -10.11919 -9.88118 -9.73599 -9.16092 -8.82386 -8.58997 -8.17018 -7.62696 -6.29279 -4.34778 1.19968 1.65176 2.76301 3.15152 3.25175 3.30616 3.77954 3.92147 4.05304 4.26629 5.01813 5.21274 5.38779 5.51980 5.57328 5.69700 5.94865 6.05379 6.10813 6.12290 6.20638 6.29231 6.41756 6.47347 6.48457 6.65816 6.82307 6.90918 6.93075 7.15882 7.19818 7.43747 7.60350 7.70766 7.97349 8.34211 8.74277 9.06237 9.30424 10.74730 Molecular weight = 329.04amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.006541 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.381411 B = 4279.753160 C = 5821.821754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.577 5.577 6 C 0.208 3.792 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.063 3.937 10 N -0.890 5.890 11 Si 0.891 3.109 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.583 3.417 16 O -0.552 6.552 17 C -0.167 4.167 18 C -0.164 4.164 19 C -0.061 4.061 20 O -0.173 6.173 21 C 0.018 3.982 22 Br 0.060 6.940 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.267 0.733 35 H 0.226 0.774 36 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.420 -6.097 -0.984 8.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.091 3.909 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.308 5.308 6 C 0.088 3.912 7 C -0.565 4.565 8 H 0.082 0.918 9 C -0.140 4.140 10 N -0.528 5.528 11 Si 0.718 3.282 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.372 3.628 16 O -0.434 6.434 17 C -0.174 4.174 18 C -0.182 4.182 19 C -0.128 4.128 20 O -0.071 6.071 21 C -0.113 4.113 22 Br 0.144 6.856 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.242 0.758 36 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.128 -6.951 -1.434 10.058 hybrid contribution 1.605 0.332 0.235 1.656 sum -5.523 -6.619 -1.199 8.703 Atomic orbital electron populations 1.22200 0.95432 1.03211 1.00885 1.20192 0.92992 0.92282 0.85384 1.22099 1.03249 0.94118 1.01086 1.22203 1.01617 1.02023 0.95830 1.48120 1.51090 1.09104 1.22481 1.20197 0.89537 0.93802 0.87654 1.21541 0.90710 1.29009 1.15228 0.91846 1.24939 0.99217 0.94774 0.95064 1.69935 1.34317 1.30665 1.17879 0.86519 0.84766 0.78322 0.78547 1.19580 1.20774 1.20702 1.17032 0.79400 0.81848 0.84553 1.90674 1.42077 1.65862 1.44786 1.21416 1.03093 0.93770 0.99114 1.25043 0.98142 1.03887 0.91150 1.24165 0.99825 0.86006 1.02795 1.83730 1.48810 1.41271 1.33244 1.23847 1.01623 0.95814 0.90024 1.96785 1.55930 1.60299 1.72627 0.93153 0.92623 0.90863 0.90483 0.92747 0.92037 0.90462 0.93127 0.92548 0.93292 0.93197 0.92328 0.75791 0.77591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 8.47 37.16 0.31 -2.31 16 2 C 0.18 3.21 1.04 -131.81 -0.14 3.07 16 3 C -0.15 -2.52 7.18 37.16 0.27 -2.25 16 4 C -0.16 -2.81 8.26 37.16 0.31 -2.51 16 5 N -0.58 -12.05 2.43 -161.49 -0.39 -12.44 16 6 C 0.21 4.66 4.06 -5.20 -0.02 4.64 16 7 C -0.53 -12.68 6.87 -34.44 -0.24 -12.91 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.53 4.76 -17.82 -0.08 1.45 16 10 N -0.89 -22.28 13.21 55.43 0.73 -21.55 16 11 Si 0.89 19.52 29.54 -169.99 -5.02 14.50 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 15 C 0.58 12.58 6.99 -12.59 -0.09 12.50 16 16 O -0.55 -12.00 11.68 5.26 0.06 -11.94 16 17 C -0.17 -3.50 6.09 -103.25 -0.63 -4.13 16 18 C -0.16 -3.35 8.22 -37.45 -0.31 -3.65 16 19 C -0.06 -1.06 12.03 29.29 0.35 -0.71 16 20 O -0.17 -3.11 10.53 7.44 0.08 -3.04 16 21 C 0.02 0.34 7.85 30.14 0.24 0.57 16 22 Br 0.06 0.98 32.48 -68.01 -2.21 -1.23 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.32 6.33 -51.93 -0.33 1.00 16 26 H 0.08 1.46 7.59 -51.93 -0.39 1.07 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.06 6.85 -51.93 -0.36 0.70 16 29 H 0.08 1.47 6.14 -51.93 -0.32 1.15 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 1.13 5.45 -51.93 -0.28 0.85 16 33 H 0.05 1.17 4.73 -51.93 -0.25 0.93 16 34 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 35 H 0.23 5.05 3.12 -52.49 -0.16 4.89 16 36 H 0.21 2.74 8.06 -52.49 -0.42 2.31 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -25.89 308.10 -6.31 -32.20 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.17 Total: 5.09 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -0.03 Total: -6.25 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.34 Total: -33.99 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.14 Total: -14.97 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 35 Polarization: 0.98 SS G_CDS: -2.21 Total: -1.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.89 -6.31 -32.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000240465929.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.163 kcal (2) G-P(sol) polarization free energy of solvation -25.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds