Wall clock time and date at job start Tue Mar 31 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99868 * 2 1 4 4 C 1.52988 * 109.47210 * 293.95251 * 3 2 1 5 5 C 1.50709 * 109.47138 * 180.02562 * 4 3 2 6 6 H 1.07995 * 119.99648 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00175 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99675 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00267 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46923 * 60.00038 * 9 7 5 11 11 H 1.48493 * 109.47745 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47127 * 300.00333 * 9 7 5 13 13 C 1.46897 * 110.99545 * 123.95088 * 2 1 3 14 14 H 1.09002 * 110.26600 * 190.65237 * 13 2 1 15 15 C 1.51377 * 110.09336 * 312.88074 * 13 2 1 16 16 C 1.38488 * 130.36736 * 281.21606 * 15 13 2 17 17 C 1.38224 * 120.23007 * 180.36261 * 16 15 13 18 18 Cl 1.73601 * 120.03823 * 180.23870 * 17 16 15 19 19 C 1.38344 * 119.92334 * 0.25752 * 17 16 15 20 20 C 1.38202 * 119.90933 * 0.02562 * 19 17 16 21 21 Cl 1.73592 * 119.89956 * 179.97438 * 20 19 17 22 22 C 1.38208 * 109.75744 * 102.04711 * 15 13 2 23 23 C 1.51370 * 109.75873 * 359.60320 * 22 15 13 24 24 C 1.54338 * 105.17457 * 17.43798 * 23 22 15 25 25 H 1.09005 * 110.82763 * 92.07862 * 24 23 22 26 26 O 1.42906 * 110.82714 * 215.43102 * 24 23 22 27 27 H 1.08992 * 109.47552 * 291.42329 * 1 2 3 28 28 H 1.09001 * 109.46771 * 51.42392 * 1 2 3 29 29 H 1.08994 * 109.47150 * 171.41215 * 1 2 3 30 30 H 1.09006 * 109.46844 * 53.95207 * 3 2 1 31 31 H 1.08997 * 109.46688 * 173.94843 * 3 2 1 32 32 H 1.09006 * 109.47181 * 299.99749 * 4 3 2 33 33 H 1.08997 * 109.47629 * 60.00168 * 4 3 2 34 34 H 0.97008 * 119.99327 * 180.02562 * 8 7 5 35 35 H 1.07994 * 119.88360 * 0.63914 * 16 15 13 36 36 H 1.08005 * 120.04993 * 180.02562 * 19 17 16 37 37 H 1.09002 * 110.30469 * 136.36159 * 23 22 15 38 38 H 1.09010 * 110.30581 * 258.51005 * 23 22 15 39 39 H 0.96700 * 113.99416 * 298.55066 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6315 2.0574 -1.3182 5 6 2.1721 3.4642 -1.3184 6 1 2.7201 3.8322 -0.4636 7 6 1.9672 4.2814 -2.4098 8 7 1.2995 3.8333 -3.4505 9 14 2.6366 6.0252 -2.4099 10 1 4.1138 5.9884 -2.2616 11 1 2.2846 6.6907 -3.6898 12 1 2.0444 6.7828 -1.2783 13 6 1.9954 -0.7659 1.1376 14 1 3.0688 -0.6049 1.2369 15 6 1.2785 -0.3665 2.4097 16 6 1.4480 0.7399 3.2252 17 6 0.6718 0.8946 4.3584 18 17 0.8842 2.2865 5.3738 19 6 -0.2742 -0.0614 4.6827 20 6 -0.4404 -1.1689 3.8730 21 17 -1.6270 -2.3686 4.2805 22 6 0.3377 -1.3247 2.7363 23 6 0.3510 -2.4288 1.7009 24 6 1.6937 -2.2688 0.9569 25 1 2.4682 -2.8809 1.4191 26 8 1.5498 -2.5952 -0.4269 27 1 -0.3634 0.3753 0.9566 28 1 -0.3633 0.6408 -0.8034 29 1 -0.3633 -1.0161 -0.1534 30 1 1.5610 1.9274 0.8309 31 1 3.0797 1.3444 0.1083 32 1 2.0660 1.5015 -2.1491 33 1 0.5473 2.0845 -1.4265 34 1 1.1556 4.4081 -4.2186 35 1 2.1861 1.4866 2.9725 36 1 -0.8821 0.0577 5.5675 37 1 0.3015 -3.4034 2.1865 38 1 -0.4820 -2.3079 1.0082 39 1 1.2758 -3.5083 -0.5892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247960747.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:37 Heat of formation + Delta-G solvation = -25.738262 kcal Electronic energy + Delta-G solvation = -23935.851884 eV Core-core repulsion = 20316.200054 eV Total energy + Delta-G solvation = -3619.651829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07370 -38.03225 -36.95318 -36.33994 -35.98855 -33.77794 -32.72011 -31.18609 -29.45135 -28.26890 -27.63075 -25.42013 -23.29835 -22.86483 -21.60500 -20.42476 -19.69855 -17.57394 -17.01725 -16.57927 -16.27925 -15.78580 -14.99248 -14.64704 -14.54086 -14.43006 -14.27968 -13.87224 -13.55864 -13.09664 -12.95401 -12.66973 -12.41305 -12.32308 -12.12384 -11.80567 -11.60329 -11.35538 -11.19143 -11.12409 -11.06624 -10.96472 -10.88251 -10.68234 -10.42957 -10.02700 -9.84578 -9.36700 -9.13821 -8.98267 -8.71152 -8.29881 -7.72569 -5.96599 -3.99026 0.76156 0.83210 1.61271 2.07571 3.16535 3.35165 3.39627 3.41769 3.88114 4.08218 4.38724 4.49095 4.56457 4.65661 4.81617 4.94447 5.02778 5.05157 5.32312 5.39202 5.44546 5.53022 5.61808 5.70981 5.76368 5.87037 5.89404 6.04963 6.13836 6.27418 6.33251 6.46035 6.57770 6.96859 7.45989 7.53284 7.72606 7.82882 7.92732 8.11619 8.45646 9.07893 9.64310 11.14669 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.003977 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.431427 B = 7039.010055 C = 8687.277618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.499 5.499 3 C 0.057 3.943 4 C 0.030 3.970 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.126 3.874 14 H 0.098 0.902 15 C -0.092 4.092 16 C -0.080 4.080 17 C -0.024 4.024 18 Cl -0.056 7.056 19 C -0.103 4.103 20 C -0.014 4.014 21 Cl -0.064 7.064 22 C -0.073 4.073 23 C -0.120 4.120 24 C 0.116 3.884 25 H 0.073 0.927 26 O -0.524 6.524 27 H 0.016 0.984 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.017 0.983 34 H 0.261 0.739 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 -14.833 16.843 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.220 5.220 3 C -0.069 4.069 4 C -0.007 4.007 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.017 3.983 14 H 0.116 0.884 15 C -0.095 4.095 16 C -0.099 4.099 17 C -0.051 4.051 18 Cl -0.027 7.027 19 C -0.123 4.123 20 C -0.041 4.041 21 Cl -0.035 7.035 22 C -0.074 4.074 23 C -0.157 4.157 24 C 0.056 3.944 25 H 0.091 0.909 26 O -0.327 6.327 27 H 0.034 0.966 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -2.744 -14.354 16.239 21.846 hybrid contribution -0.343 1.004 1.110 1.535 sum -3.087 -13.350 17.348 22.107 Atomic orbital electron populations 1.22547 0.87851 1.01886 1.00316 1.62309 1.07879 1.15518 1.36271 1.22468 0.98460 0.85309 1.00702 1.19075 0.96874 0.93928 0.90827 1.21138 1.35240 0.97813 1.01885 0.92922 1.24972 0.95290 0.98348 0.95574 1.69970 1.40708 1.36465 1.06003 0.86684 0.79457 0.84819 0.77184 1.20232 1.21284 1.20326 1.21360 0.99285 0.92737 0.84960 0.88378 1.21257 0.97728 0.93702 0.96773 1.20722 0.99335 0.97836 0.92045 1.20541 0.99089 0.90864 0.94599 1.98389 1.96579 1.40393 1.67385 1.20741 0.98715 0.92253 1.00570 1.20240 0.94962 0.92649 0.96275 1.98368 1.56150 1.55612 1.93419 1.20306 0.95391 0.97735 0.94018 1.22087 1.00796 0.96592 0.96244 1.22337 0.94196 0.94974 0.82903 0.90939 1.86835 1.91187 1.32978 1.21715 0.96554 0.90374 0.91684 0.96083 0.92123 0.95587 0.96482 0.92972 0.84081 0.83826 0.90046 0.87995 0.78512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.08 60.07 0.49 0.86 16 2 N -0.50 -8.88 4.08 -235.03 -0.96 -9.84 16 3 C 0.06 1.19 4.63 -3.83 -0.02 1.17 16 4 C 0.03 0.79 4.91 -27.89 -0.14 0.65 16 5 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 6 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.13 1.77 3.02 -67.83 -0.20 1.57 16 14 H 0.10 1.35 7.88 -51.93 -0.41 0.94 16 15 C -0.09 -1.21 3.78 -104.21 -0.39 -1.60 16 16 C -0.08 -1.06 8.97 -39.49 -0.35 -1.42 16 17 C -0.02 -0.29 6.32 -39.55 -0.25 -0.54 16 18 Cl -0.06 -0.66 28.96 -51.86 -1.50 -2.16 16 19 C -0.10 -1.16 9.61 -39.56 -0.38 -1.54 16 20 C -0.01 -0.16 6.32 -39.45 -0.25 -0.41 16 21 Cl -0.06 -0.64 28.71 -51.86 -1.49 -2.13 16 22 C -0.07 -0.86 5.23 -104.16 -0.55 -1.41 16 23 C -0.12 -1.21 5.44 -26.85 -0.15 -1.36 16 24 C 0.12 1.29 4.12 -25.32 -0.10 1.18 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 O -0.52 -6.37 11.93 -35.23 -0.42 -6.79 16 27 H 0.02 0.27 6.25 -51.93 -0.32 -0.05 16 28 H 0.08 1.54 6.13 -51.93 -0.32 1.23 16 29 H 0.06 0.99 4.98 -51.93 -0.26 0.73 16 30 H 0.02 0.43 6.91 -51.93 -0.36 0.08 16 31 H 0.06 1.24 7.90 -51.93 -0.41 0.83 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.02 0.47 6.39 -51.93 -0.33 0.14 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 35 H 0.14 1.89 7.77 -52.49 -0.41 1.48 16 36 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 1.09 6.14 -51.92 -0.32 0.77 16 39 H 0.37 2.63 9.11 45.56 0.42 3.05 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -31.43 340.80 -10.18 -41.61 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.95 Total: 0.01 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.71 Total: -16.32 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.22 Total: -36.11 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.42 Total: -6.79 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -2.99 Total: -4.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.43 -10.18 -41.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247960747.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.875 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds