Wall clock time and date at job start Tue Mar 31 2020 05:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46901 * 111.00191 * 2 1 4 4 C 1.53003 * 109.47267 * 293.95376 * 3 2 1 5 5 C 1.50699 * 109.47174 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99997 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00117 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47134 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46926 * 120.00028 * 9 7 5 12 12 H 1.48499 * 109.47097 * 239.99816 * 9 7 5 13 13 C 1.46897 * 111.00387 * 123.95837 * 2 1 3 14 14 H 1.09003 * 110.26472 * 300.74385 * 13 2 1 15 15 C 1.51369 * 110.52411 * 178.60939 * 13 2 1 16 16 C 1.38492 * 130.36715 * 77.74322 * 15 13 2 17 17 C 1.38226 * 120.23011 * 180.38720 * 16 15 13 18 18 Cl 1.73605 * 120.03607 * 180.22821 * 17 16 15 19 19 C 1.38341 * 119.92374 * 0.25335 * 17 16 15 20 20 C 1.38196 * 119.91061 * 359.97438 * 19 17 16 21 21 Cl 1.73595 * 119.90190 * 180.02562 * 20 19 17 22 22 C 1.38207 * 109.75692 * 258.58415 * 15 13 2 23 23 C 1.51367 * 109.75998 * 359.58782 * 22 15 13 24 24 C 1.54345 * 110.30203 * 62.80930 * 13 2 1 25 25 H 1.08993 * 110.82542 * 334.36009 * 24 13 2 26 26 O 1.42899 * 110.82171 * 210.80283 * 24 13 2 27 27 H 1.09005 * 109.47349 * 293.14283 * 1 2 3 28 28 H 1.09006 * 109.47082 * 53.13942 * 1 2 3 29 29 H 1.08996 * 109.47721 * 173.13905 * 1 2 3 30 30 H 1.08998 * 109.47065 * 53.95993 * 3 2 1 31 31 H 1.09007 * 109.47363 * 173.95561 * 3 2 1 32 32 H 1.08996 * 109.46969 * 299.99862 * 4 3 2 33 33 H 1.08997 * 109.46870 * 59.99896 * 4 3 2 34 34 H 0.97001 * 120.00121 * 180.02562 * 8 7 5 35 35 H 1.08002 * 119.88281 * 0.66363 * 16 15 13 36 36 H 1.08006 * 120.04875 * 180.02562 * 19 17 16 37 37 H 1.08996 * 110.30672 * 101.99939 * 23 22 15 38 38 H 1.09002 * 110.29666 * 224.05184 * 23 22 15 39 39 H 0.96701 * 113.99959 * 185.57342 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1721 3.4641 -1.3185 6 1 2.7201 3.8322 -0.4637 7 6 1.9663 4.2816 -2.4095 8 7 1.2976 3.8340 -3.4498 9 14 2.6358 6.0255 -2.4095 10 1 3.3448 6.2835 -1.1305 11 1 3.5819 6.1925 -3.5418 12 1 1.5134 6.9867 -2.5565 13 6 1.9954 -0.7660 1.1375 14 1 1.6427 -0.3386 2.0761 15 6 3.5087 -0.7876 1.1079 16 6 4.4269 0.1832 1.4718 17 6 5.7821 -0.0600 1.3497 18 17 6.9288 1.1584 1.8131 19 6 6.2235 -1.2751 0.8574 20 6 5.3084 -2.2430 0.4894 21 17 5.8626 -3.7680 -0.1277 22 6 3.9490 -1.9996 0.6107 23 6 2.7620 -2.8794 0.2816 24 6 1.5699 -2.2457 1.0296 25 1 0.6523 -2.3437 0.4495 26 8 1.4173 -2.8263 2.3264 27 1 -0.3634 0.4039 0.9450 28 1 -0.3633 0.6165 -0.8223 29 1 -0.3634 -1.0202 -0.1228 30 1 1.5612 1.9273 0.8310 31 1 3.0797 1.3444 0.1082 32 1 2.0658 1.5016 -2.1491 33 1 0.5472 2.0845 -1.4265 34 1 1.1531 4.4090 -4.2175 35 1 4.0829 1.1320 1.8566 36 1 7.2820 -1.4674 0.7616 37 1 2.5776 -2.8796 -0.7926 38 1 2.9352 -3.8958 0.6353 39 1 1.2341 -3.7757 2.3132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247960749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:39 Heat of formation + Delta-G solvation = -31.228455 kcal Electronic energy + Delta-G solvation = -23836.308632 eV Core-core repulsion = 20216.418730 eV Total energy + Delta-G solvation = -3619.889902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77153 -37.95682 -36.82416 -36.45589 -36.17073 -33.69125 -32.80572 -31.13540 -29.87452 -28.13599 -27.16380 -25.64497 -23.41238 -22.78430 -21.49384 -20.39415 -19.85481 -17.63377 -16.98621 -16.36257 -16.26842 -15.69552 -15.14741 -14.74529 -14.52894 -14.32188 -14.10880 -13.92076 -13.73810 -13.27599 -12.84196 -12.56926 -12.43443 -12.14411 -12.03484 -11.89465 -11.62505 -11.48194 -11.20870 -11.05982 -10.98190 -10.92258 -10.83606 -10.74084 -10.51910 -10.14304 -9.88892 -9.43536 -9.15939 -8.86170 -8.56440 -8.34670 -7.87606 -6.01473 -4.03632 0.95467 1.00672 1.76657 2.23438 3.30587 3.31425 3.38410 3.42318 3.76129 4.21711 4.28564 4.44708 4.67140 4.79545 4.89251 4.94622 5.17999 5.23190 5.29900 5.35047 5.55748 5.64206 5.67534 5.74371 5.78292 5.85732 5.88735 6.03054 6.17513 6.29039 6.37661 6.42626 6.47098 6.89362 7.31906 7.36840 7.51338 7.72647 7.84708 8.03550 8.40289 9.03192 9.60353 11.09957 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.004381 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.605207 B = 6389.897413 C = 7894.305929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.527 5.527 3 C 0.055 3.945 4 C 0.030 3.970 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.128 3.872 14 H 0.062 0.938 15 C -0.049 4.049 16 C -0.079 4.079 17 C -0.024 4.024 18 Cl -0.058 7.058 19 C -0.102 4.102 20 C -0.015 4.015 21 Cl -0.067 7.067 22 C -0.064 4.064 23 C -0.103 4.103 24 C 0.106 3.894 25 H 0.087 0.913 26 O -0.560 6.560 27 H 0.022 0.978 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.024 0.976 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 -16.056 10.373 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.071 4.071 4 C -0.007 4.007 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.020 3.980 14 H 0.079 0.921 15 C -0.050 4.050 16 C -0.099 4.099 17 C -0.051 4.051 18 Cl -0.029 7.029 19 C -0.121 4.121 20 C -0.042 4.042 21 Cl -0.038 7.038 22 C -0.065 4.065 23 C -0.140 4.140 24 C 0.047 3.953 25 H 0.105 0.895 26 O -0.366 6.366 27 H 0.041 0.959 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.299 -15.643 9.950 19.282 hybrid contribution 0.284 0.918 0.341 1.020 sum 5.583 -14.725 10.291 18.812 Atomic orbital electron populations 1.22504 0.87211 1.01502 1.01447 1.62128 1.07840 1.16408 1.38849 1.22559 0.99365 0.84305 1.00862 1.19088 0.96895 0.94082 0.90621 1.21190 1.35087 0.97637 1.01996 0.92755 1.24963 0.95230 0.98409 0.95537 1.69974 1.40808 1.36356 1.06066 0.86571 0.78775 0.84815 0.78081 1.19718 1.20960 1.21029 1.20861 0.89045 0.93365 0.94747 0.92075 1.20143 0.95124 0.92754 0.97026 1.20683 0.90282 0.99681 0.99212 1.20444 0.90391 0.90875 1.03415 1.98382 1.59516 1.54291 1.90696 1.20708 1.00110 0.91223 1.00093 1.20168 0.91990 0.88589 1.03443 1.98358 1.89796 1.29624 1.85997 1.20286 0.92143 0.96526 0.97589 1.21767 0.91658 0.98045 1.02563 1.22437 0.97005 0.92323 0.83567 0.89519 1.86486 1.94478 1.27325 1.28282 0.95896 0.89533 0.92186 0.95909 0.91304 0.95723 0.96369 0.93048 0.84205 0.83860 0.88039 0.89940 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.15 60.06 0.55 0.87 16 2 N -0.53 -9.02 4.64 -235.03 -1.09 -10.11 16 3 C 0.06 1.13 4.64 -3.82 -0.02 1.11 16 4 C 0.03 0.77 4.91 -27.88 -0.14 0.64 16 5 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 6 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.13 1.89 2.34 -67.83 -0.16 1.74 16 14 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 15 C -0.05 -0.74 5.05 -104.21 -0.53 -1.27 16 16 C -0.08 -1.19 7.99 -39.49 -0.32 -1.50 16 17 C -0.02 -0.34 6.32 -39.55 -0.25 -0.59 16 18 Cl -0.06 -0.76 28.96 -51.86 -1.50 -2.26 16 19 C -0.10 -1.31 9.61 -39.56 -0.38 -1.69 16 20 C -0.02 -0.20 6.32 -39.45 -0.25 -0.45 16 21 Cl -0.07 -0.75 28.71 -51.86 -1.49 -2.24 16 22 C -0.06 -0.87 6.05 -104.16 -0.63 -1.50 16 23 C -0.10 -1.17 6.21 -26.85 -0.17 -1.33 16 24 C 0.11 1.24 3.95 -25.32 -0.10 1.14 16 25 H 0.09 0.93 5.96 -51.93 -0.31 0.63 16 26 O -0.56 -6.05 13.41 -35.23 -0.47 -6.52 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 1.51 6.19 -51.93 -0.32 1.18 16 29 H 0.06 0.76 6.21 -51.93 -0.32 0.44 16 30 H 0.02 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.07 1.41 4.93 -51.92 -0.26 1.15 16 32 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.02 0.48 6.42 -51.93 -0.33 0.15 16 34 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.14 2.07 7.59 -52.49 -0.40 1.67 16 36 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 39 H 0.38 2.26 9.11 45.56 0.41 2.68 16 LS Contribution 346.26 15.07 5.22 5.22 Total: -1.00 -30.85 346.26 -10.44 -41.28 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.02 Total: -0.06 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.79 Total: -16.05 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.35 Total: -35.95 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.47 Total: -6.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -2.99 Total: -4.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.85 -10.44 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247960749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.056 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds