Wall clock time and date at job start Tue Mar 31 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46890 * 1 3 3 C 1.46901 * 111.00191 * 2 1 4 4 C 1.53003 * 109.47267 * 293.95376 * 3 2 1 5 5 C 1.50699 * 109.47174 * 180.02562 * 4 3 2 6 6 H 1.08008 * 119.99997 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00117 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99878 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00045 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47134 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46926 * 120.00028 * 9 7 5 12 12 H 1.48499 * 109.47097 * 239.99816 * 9 7 5 13 13 C 1.46897 * 111.00387 * 123.95837 * 2 1 3 14 14 H 1.09003 * 110.26472 * 300.74385 * 13 2 1 15 15 C 1.51369 * 110.52411 * 178.60939 * 13 2 1 16 16 C 1.38492 * 130.36715 * 77.74322 * 15 13 2 17 17 C 1.38226 * 120.23011 * 180.38720 * 16 15 13 18 18 Cl 1.73605 * 120.03607 * 180.22821 * 17 16 15 19 19 C 1.38341 * 119.92374 * 0.25335 * 17 16 15 20 20 C 1.38196 * 119.91061 * 359.97438 * 19 17 16 21 21 Cl 1.73595 * 119.90190 * 180.02562 * 20 19 17 22 22 C 1.38207 * 109.75692 * 258.58415 * 15 13 2 23 23 C 1.51367 * 109.75998 * 359.58782 * 22 15 13 24 24 C 1.54345 * 110.30203 * 62.80930 * 13 2 1 25 25 H 1.08993 * 110.82542 * 334.36009 * 24 13 2 26 26 O 1.42899 * 110.82171 * 210.80283 * 24 13 2 27 27 H 1.09005 * 109.47349 * 293.14283 * 1 2 3 28 28 H 1.09006 * 109.47082 * 53.13942 * 1 2 3 29 29 H 1.08996 * 109.47721 * 173.13905 * 1 2 3 30 30 H 1.08998 * 109.47065 * 53.95993 * 3 2 1 31 31 H 1.09007 * 109.47363 * 173.95561 * 3 2 1 32 32 H 1.08996 * 109.46969 * 299.99862 * 4 3 2 33 33 H 1.08997 * 109.46870 * 59.99896 * 4 3 2 34 34 H 0.97001 * 120.00121 * 180.02562 * 8 7 5 35 35 H 1.08002 * 119.88281 * 0.66363 * 16 15 13 36 36 H 1.08006 * 120.04875 * 180.02562 * 19 17 16 37 37 H 1.08996 * 110.30672 * 101.99939 * 23 22 15 38 38 H 1.09002 * 110.29666 * 224.05184 * 23 22 15 39 39 H 0.96701 * 113.99959 * 185.57342 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3183 5 6 2.1721 3.4641 -1.3185 6 1 2.7201 3.8322 -0.4637 7 6 1.9663 4.2816 -2.4095 8 7 1.2976 3.8340 -3.4498 9 14 2.6358 6.0255 -2.4095 10 1 3.3448 6.2835 -1.1305 11 1 3.5819 6.1925 -3.5418 12 1 1.5134 6.9867 -2.5565 13 6 1.9954 -0.7660 1.1375 14 1 1.6427 -0.3386 2.0761 15 6 3.5087 -0.7876 1.1079 16 6 4.4269 0.1832 1.4718 17 6 5.7821 -0.0600 1.3497 18 17 6.9288 1.1584 1.8131 19 6 6.2235 -1.2751 0.8574 20 6 5.3084 -2.2430 0.4894 21 17 5.8626 -3.7680 -0.1277 22 6 3.9490 -1.9996 0.6107 23 6 2.7620 -2.8794 0.2816 24 6 1.5699 -2.2457 1.0296 25 1 0.6523 -2.3437 0.4495 26 8 1.4173 -2.8263 2.3264 27 1 -0.3634 0.4039 0.9450 28 1 -0.3633 0.6165 -0.8223 29 1 -0.3634 -1.0202 -0.1228 30 1 1.5612 1.9273 0.8310 31 1 3.0797 1.3444 0.1082 32 1 2.0658 1.5016 -2.1491 33 1 0.5472 2.0845 -1.4265 34 1 1.1531 4.4090 -4.2175 35 1 4.0829 1.1320 1.8566 36 1 7.2820 -1.4674 0.7616 37 1 2.5776 -2.8796 -0.7926 38 1 2.9352 -3.8958 0.6353 39 1 1.2341 -3.7757 2.3132 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247960749.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:38 Heat of formation + Delta-G solvation = -51.076557 kcal Electronic energy + Delta-G solvation = -23837.169310 eV Core-core repulsion = 20216.418730 eV Total energy + Delta-G solvation = -3620.750580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 329.069 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82779 -39.03512 -37.86929 -37.59500 -37.19075 -35.26508 -34.32770 -32.22343 -31.65215 -29.21669 -28.30840 -27.30525 -25.07182 -23.83549 -22.65516 -21.77060 -21.18822 -18.84225 -18.27626 -17.94994 -17.30678 -16.85878 -16.54315 -16.29309 -15.79901 -15.48593 -15.38834 -15.05061 -14.85054 -14.51531 -14.20973 -14.15470 -13.69322 -13.45105 -13.27268 -12.98150 -12.91437 -12.86577 -12.68776 -12.53647 -12.46862 -12.13436 -11.98994 -11.93920 -11.86560 -11.66444 -11.29507 -11.23109 -10.99874 -10.53475 -9.95752 -9.59788 -9.24803 -8.19894 -6.29888 -0.10300 -0.05381 0.74991 1.21312 1.38928 1.40002 1.52434 2.22713 2.40088 2.75183 3.14225 3.18622 3.29447 3.59099 3.77442 3.89320 3.95336 4.16594 4.19594 4.28597 4.33335 4.43129 4.53428 4.64029 4.69523 4.76619 4.80101 4.88680 4.92172 4.98144 5.04643 5.13678 5.26801 5.41566 5.46378 5.64773 5.77355 6.04491 6.15035 6.30042 6.86439 6.90831 7.38898 8.92326 Molecular weight = 329.07amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.004381 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.605207 B = 6389.897413 C = 7894.305929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.073 3.927 4 C 0.041 3.959 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.126 3.874 14 H 0.052 0.948 15 C -0.072 4.072 16 C -0.096 4.096 17 C -0.033 4.033 18 Cl -0.055 7.055 19 C -0.099 4.099 20 C -0.021 4.021 21 Cl -0.048 7.048 22 C -0.068 4.068 23 C -0.100 4.100 24 C 0.119 3.881 25 H 0.100 0.900 26 O -0.571 6.571 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.094 0.906 30 H 0.019 0.981 31 H 0.067 0.933 32 H -0.008 1.008 33 H 0.000 1.000 34 H 0.263 0.737 35 H 0.131 0.869 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 -17.292 11.013 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.258 5.258 3 C -0.054 4.054 4 C 0.003 3.997 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.783 3.217 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.202 1.202 13 C 0.018 3.982 14 H 0.069 0.931 15 C -0.073 4.073 16 C -0.115 4.115 17 C -0.060 4.060 18 Cl -0.026 7.026 19 C -0.119 4.119 20 C -0.048 4.048 21 Cl -0.019 7.019 22 C -0.070 4.070 23 C -0.137 4.137 24 C 0.060 3.940 25 H 0.118 0.882 26 O -0.380 6.380 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.038 0.962 31 H 0.085 0.915 32 H 0.010 0.990 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.181 0.819 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 5.851 -16.912 10.607 20.803 hybrid contribution 0.127 1.216 0.162 1.233 sum 5.978 -15.696 10.769 19.952 Atomic orbital electron populations 1.22516 0.86220 1.03151 1.00612 1.61999 1.08789 1.14360 1.40610 1.22138 0.99347 0.86166 0.97749 1.18886 0.95272 0.93440 0.92086 1.21601 1.35139 0.98963 1.02202 0.92557 1.25846 0.95402 1.02805 0.95093 1.70095 1.41971 1.38077 1.06777 0.85498 0.78286 0.79493 0.78408 1.18781 1.20443 1.20228 1.20930 0.89152 0.95126 0.93035 0.93065 1.20282 0.95237 0.93561 0.98196 1.20753 0.91072 0.99668 1.00025 1.20526 0.90146 0.91500 1.03821 1.98377 1.59203 1.54285 1.90699 1.20962 1.01191 0.90649 0.99072 1.20281 0.91936 0.89389 1.03147 1.98363 1.89577 1.28277 1.85688 1.20601 0.93125 0.96438 0.96825 1.21832 0.90362 0.98924 1.02561 1.22250 0.97602 0.90039 0.84158 0.88226 1.86440 1.94531 1.29455 1.27590 0.95357 0.92171 0.88777 0.96249 0.91477 0.98994 0.98142 0.92783 0.85067 0.81936 0.87986 0.87308 0.74598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.15 127.69 1.17 1.85 16 2 N -0.53 -18.27 4.64 -897.51 -4.17 -22.43 16 3 C 0.07 3.08 4.64 86.30 0.40 3.48 16 4 C 0.04 2.14 4.91 29.85 0.15 2.29 16 5 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 6 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 9 Si 0.96 44.52 29.54 68.60 2.03 46.55 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 13 C 0.13 3.62 2.34 44.84 0.11 3.73 16 14 H 0.05 1.57 8.11 -2.39 -0.02 1.55 16 15 C -0.07 -2.12 5.05 -19.60 -0.10 -2.22 16 16 C -0.10 -2.90 7.99 22.33 0.18 -2.72 16 17 C -0.03 -0.91 6.32 22.29 0.14 -0.76 16 18 Cl -0.05 -1.41 28.96 -2.72 -0.08 -1.48 16 19 C -0.10 -2.43 9.61 22.28 0.21 -2.21 16 20 C -0.02 -0.50 6.32 22.35 0.14 -0.36 16 21 Cl -0.05 -0.97 28.71 -2.72 -0.08 -1.05 16 22 C -0.07 -1.77 6.05 -19.57 -0.12 -1.88 16 23 C -0.10 -2.01 6.21 30.52 0.19 -1.82 16 24 C 0.12 2.50 3.95 31.51 0.12 2.62 16 25 H 0.10 1.84 5.96 -2.39 -0.01 1.83 16 26 O -0.57 -10.73 13.41 -148.98 -2.00 -12.73 16 27 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 2.15 6.19 -2.38 -0.01 2.14 16 29 H 0.09 2.20 6.21 -2.39 -0.01 2.18 16 30 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 31 H 0.07 2.84 4.93 -2.38 -0.01 2.83 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.00 0.02 6.42 -2.39 -0.02 0.00 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.13 4.04 7.59 -2.91 -0.02 4.02 16 36 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.11 1.60 8.11 -2.39 -0.02 1.58 16 39 H 0.40 3.37 9.11 -74.06 -0.67 2.70 16 Total: -1.00 -67.00 346.26 -0.30 -67.30 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.42 Total: 7.71 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 3.29 Total: -27.75 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -3.88 Total: -78.54 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -2.00 Total: -12.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -0.16 Total: -2.53 kcal Total: -67.00 -0.30 -67.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247960749.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.223 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds