Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34762 * 116.99752 * 2 1 4 4 O 1.21510 * 119.99936 * 0.02562 * 3 2 1 5 5 C 1.47392 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.39776 * 120.19575 * 0.02562 * 5 3 2 7 7 C 1.37764 * 119.89895 * 179.97438 * 6 5 3 8 8 C 1.38563 * 120.31429 * 359.97438 * 7 6 5 9 9 S 1.76194 * 119.80109 * 180.02562 * 8 7 6 10 10 O 1.42107 * 106.40237 * 203.54175 * 9 8 7 11 11 O 1.42096 * 106.40472 * 336.45894 * 9 8 7 12 12 N 1.65602 * 107.22129 * 90.00159 * 9 8 7 13 13 C 1.46506 * 119.99877 * 64.99426 * 12 9 8 14 14 C 1.50701 * 109.46940 * 165.00309 * 13 12 9 15 15 H 1.07998 * 120.00119 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99823 * 180.02562 * 14 13 12 17 17 N 1.31508 * 120.00297 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99902 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47399 * 59.99948 * 18 16 14 20 20 H 1.48495 * 109.47320 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47375 * 300.00032 * 18 16 14 22 22 C 1.38061 * 120.39854 * 359.72634 * 8 7 6 23 23 C 1.38710 * 120.08582 * 0.55165 * 22 8 7 24 24 O 1.35638 * 120.14892 * 179.71976 * 23 22 8 25 25 C 1.42903 * 117.00396 * 359.73169 * 24 23 22 26 26 H 1.09006 * 109.47355 * 299.99731 * 1 2 3 27 27 H 1.08998 * 109.47758 * 59.99925 * 1 2 3 28 28 H 1.09004 * 109.46525 * 180.02562 * 1 2 3 29 29 H 1.07994 * 120.04741 * 359.97438 * 6 5 3 30 30 H 1.08007 * 119.84110 * 180.02562 * 7 6 5 31 31 H 0.96996 * 120.00344 * 245.00712 * 12 9 8 32 32 H 1.08995 * 109.47285 * 285.00352 * 13 12 9 33 33 H 1.09001 * 109.46602 * 45.00739 * 13 12 9 34 34 H 0.97000 * 120.00398 * 179.97438 * 17 16 14 35 35 H 1.07997 * 119.95807 * 180.28244 * 22 8 7 36 36 H 1.09002 * 109.47382 * 179.97438 * 25 24 23 37 37 H 1.09001 * 109.46938 * 59.99691 * 25 24 23 38 38 H 1.09004 * 109.46926 * 299.99812 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2008 0.0000 4 8 1.4018 2.2198 0.0005 5 6 3.5356 1.2780 -0.0006 6 6 4.3010 0.1084 -0.0017 7 6 5.6763 0.1878 -0.0027 8 6 6.3056 1.4222 -0.0033 9 16 8.0655 1.5080 -0.0053 10 8 8.4061 2.7757 0.5390 11 8 8.5278 0.2792 0.5384 12 7 8.5533 1.5321 -1.5876 13 6 8.2013 2.6664 -2.4455 14 6 9.0483 2.6356 -3.6916 15 1 9.7757 1.8496 -3.8308 16 6 8.8946 3.6110 -4.6538 17 7 8.0092 4.5685 -4.4841 18 14 9.9439 3.5725 -6.1987 19 1 9.6999 2.3041 -6.9314 20 1 9.5881 4.7230 -7.0676 21 1 11.3785 3.6602 -5.8251 22 6 5.5620 2.5855 -0.0084 23 6 4.1763 2.5250 -0.0016 24 8 3.4445 3.6670 -0.0009 25 6 4.1665 4.9002 -0.0015 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 0.0005 29 1 3.8148 -0.8559 -0.0017 30 1 6.2668 -0.7166 -0.0040 31 1 9.0720 0.7952 -1.9466 32 1 7.1485 2.6013 -2.7201 33 1 8.3798 3.5976 -1.9077 34 1 7.9013 5.2549 -5.1609 35 1 6.0599 3.5438 -0.0134 36 1 3.4632 5.7330 -0.0013 37 1 4.7927 4.9542 -0.8920 38 1 4.7943 4.9542 0.8880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253428933.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = -165.096817 kcal Electronic energy + Delta-G solvation = -26114.142360 eV Core-core repulsion = 22049.782032 eV Total energy + Delta-G solvation = -4064.360328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89761 -39.67518 -37.52761 -36.85604 -36.44477 -35.48742 -34.73708 -32.24649 -32.03870 -30.39357 -28.10628 -27.26181 -26.82888 -24.63363 -22.66296 -22.36247 -21.30390 -19.48539 -18.48705 -17.90760 -17.40839 -17.10221 -16.53815 -16.49481 -16.05120 -15.82217 -15.69560 -15.37150 -14.80296 -14.63502 -14.03686 -13.73447 -13.56452 -13.54028 -13.06346 -12.84142 -12.60590 -12.36134 -12.20493 -11.92968 -11.90430 -11.80952 -11.68198 -11.55014 -11.27745 -10.98386 -10.94338 -10.90945 -10.81629 -10.40354 -10.19065 -9.53889 -9.53004 -8.99846 -8.47221 -8.32859 -6.24770 -4.29622 0.16213 0.81867 1.20414 2.29036 2.48860 3.08984 3.23138 3.28048 3.29197 3.35571 3.61242 4.10028 4.29165 4.42765 4.58357 4.65531 4.90970 4.96773 4.99030 5.05755 5.12820 5.24033 5.25870 5.28166 5.33319 5.45271 5.61077 5.75548 5.90364 5.96740 6.18166 6.31089 6.42808 7.15960 7.17476 7.22581 7.64511 7.68289 7.72751 8.08372 8.73933 9.35857 10.85627 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.003857 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.347419 B = 7256.897987 C = 8092.620665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.358 6.358 3 C 0.507 3.493 4 O -0.482 6.482 5 C -0.122 4.122 6 C -0.048 4.048 7 C -0.077 4.077 8 C -0.597 4.597 9 S 2.687 3.313 10 O -0.956 6.956 11 O -0.971 6.971 12 N -1.098 6.098 13 C 0.245 3.755 14 C -0.531 4.531 15 H 0.067 0.933 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.114 4.114 23 C 0.174 3.826 24 O -0.285 6.285 25 C 0.012 3.988 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.150 0.850 31 H 0.413 0.587 32 H 0.022 0.978 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.290 -7.260 8.902 16.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.275 6.275 3 C 0.351 3.649 4 O -0.369 6.369 5 C -0.125 4.125 6 C -0.066 4.066 7 C -0.096 4.096 8 C -0.680 4.680 9 S 2.773 3.227 10 O -0.946 6.946 11 O -0.961 6.961 12 N -0.862 5.862 13 C 0.122 3.878 14 C -0.571 4.571 15 H 0.085 0.915 16 C -0.141 4.141 17 N -0.528 5.528 18 Si 0.732 3.268 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.134 4.134 23 C 0.125 3.875 24 O -0.196 6.196 25 C -0.083 4.083 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.169 0.831 30 H 0.168 0.832 31 H 0.248 0.752 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.176 0.824 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.453 -6.538 9.626 16.327 hybrid contribution -0.058 -0.023 -1.439 1.440 sum -11.511 -6.561 8.187 15.575 Atomic orbital electron populations 1.23260 0.75975 1.03654 1.02660 1.86537 1.23533 1.32625 1.84778 1.20853 0.88633 0.81660 0.73740 1.90895 1.66261 1.35605 1.44129 1.18626 0.89643 0.92179 1.12009 1.21390 0.93569 0.97314 0.94370 1.20787 0.94692 0.96476 0.97629 1.31456 1.28915 0.98506 1.09154 1.02127 0.73351 0.73589 0.73627 1.93580 1.81234 1.42489 1.77319 1.93546 1.79330 1.45531 1.77726 1.55435 1.67831 1.32787 1.30116 1.19131 0.96278 0.82587 0.89852 1.21136 1.21341 1.11917 1.02712 0.91524 1.24958 0.95483 0.94988 0.98647 1.69906 1.33879 1.13654 1.35399 0.86457 0.80576 0.77687 0.82125 1.20038 1.21098 1.19972 1.21079 0.92149 0.99418 1.00748 1.18998 0.89789 0.86169 0.92509 1.86278 1.34372 1.12380 1.86562 1.23357 0.98593 0.83657 1.02665 0.91888 0.91782 0.87990 0.83074 0.83195 0.75195 0.95998 0.94287 0.92337 0.82448 0.87553 0.91095 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.21 9.82 -40.66 -0.40 -4.61 16 3 C 0.51 7.41 7.89 34.46 0.27 7.69 16 4 O -0.48 -8.16 14.95 -26.60 -0.40 -8.55 16 5 C -0.12 -1.81 5.88 -104.86 -0.62 -2.43 16 6 C -0.05 -0.60 9.61 -39.18 -0.38 -0.98 16 7 C -0.08 -1.04 9.49 -39.64 -0.38 -1.42 16 8 C -0.60 -9.49 5.95 -39.53 -0.24 -9.72 16 9 S 2.69 47.10 5.73 -107.50 -0.62 46.48 16 10 O -0.96 -19.29 16.74 -57.17 -0.96 -20.25 16 11 O -0.97 -17.48 17.26 -57.17 -0.99 -18.47 16 12 N -1.10 -20.89 5.99 -11.65 -0.07 -20.96 16 13 C 0.24 5.75 5.98 -5.19 -0.03 5.71 16 14 C -0.53 -13.71 9.27 -34.44 -0.32 -14.03 16 15 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 18 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.11 -1.85 8.50 -39.47 -0.34 -2.18 16 23 C 0.17 2.78 6.70 -38.67 -0.26 2.52 16 24 O -0.28 -4.51 8.57 -40.50 -0.35 -4.86 16 25 C 0.01 0.15 9.81 101.05 0.99 1.14 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.15 1.44 7.61 -52.49 -0.40 1.04 16 30 H 0.15 1.72 7.60 -52.48 -0.40 1.32 16 31 H 0.41 7.08 8.54 -34.47 -0.29 6.79 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.16 2.46 5.84 -52.49 -0.31 2.16 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.92 7.65 -51.93 -0.40 0.52 16 38 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -33.57 347.63 -7.38 -40.95 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.25 Total: 4.34 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -0.32 Total: -10.75 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.67 Total: -44.78 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -3.09 Total: -56.73 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 47.10 SS G_CDS: -0.62 Total: 46.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.57 -7.38 -40.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253428933.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.142 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds