Wall clock time and date at job start Tue Mar 31 2020 05:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47218 * 2 1 4 4 C 1.36935 * 119.99594 * 273.62365 * 3 2 1 5 5 H 1.07998 * 119.99903 * 137.78416 * 4 3 2 6 6 C 1.38814 * 120.00134 * 317.77683 * 4 3 2 7 7 N 1.31616 * 120.00029 * 157.81276 * 6 4 3 8 8 Si 1.86799 * 119.99782 * 337.81565 * 6 4 3 9 9 H 1.48493 * 109.47261 * 95.57857 * 8 6 4 10 10 H 1.48507 * 109.46805 * 215.57753 * 8 6 4 11 11 H 1.48496 * 109.47201 * 335.57459 * 8 6 4 12 12 S 1.65595 * 119.99806 * 93.61979 * 3 2 1 13 13 O 1.42102 * 106.39904 * 156.46367 * 12 3 2 14 14 O 1.42100 * 106.40664 * 23.54271 * 12 3 2 15 15 C 1.76205 * 107.22086 * 269.99823 * 12 3 2 16 16 C 1.38563 * 119.84542 * 270.03022 * 15 12 3 17 17 C 1.38055 * 120.39809 * 179.70014 * 16 15 12 18 18 C 1.38707 * 120.09307 * 0.55177 * 17 16 15 19 19 O 1.35638 * 120.15873 * 179.72594 * 18 17 16 20 20 C 1.40203 * 119.68629 * 359.44779 * 18 17 16 21 21 C 1.47402 * 120.19468 * 180.30167 * 20 18 17 22 22 O 1.21512 * 119.99669 * 359.97438 * 21 20 18 23 23 O 1.34749 * 120.00047 * 180.02562 * 21 20 18 24 24 C 1.45201 * 117.00196 * 179.97438 * 23 21 20 25 25 C 1.37763 * 119.84233 * 89.99935 * 15 12 3 26 26 H 1.09008 * 109.47245 * 183.93861 * 1 2 3 27 27 H 1.09004 * 109.47301 * 303.93927 * 1 2 3 28 28 H 1.09000 * 109.47297 * 63.93931 * 1 2 3 29 29 H 1.08993 * 109.46749 * 239.99598 * 2 1 3 30 30 H 1.08998 * 109.46908 * 120.00103 * 2 1 3 31 31 H 0.97000 * 119.99952 * 179.97438 * 7 6 4 32 32 H 1.07997 * 119.80191 * 359.96861 * 16 15 12 33 33 H 1.08003 * 119.95620 * 180.27658 * 17 16 15 34 34 H 0.96698 * 113.99570 * 269.72524 * 19 18 17 35 35 H 1.09004 * 109.46995 * 300.00055 * 24 23 21 36 36 H 1.09001 * 109.46476 * 60.00060 * 24 23 21 37 37 H 1.08996 * 109.46792 * 179.97438 * 24 23 21 38 38 H 1.08000 * 120.04994 * 0.04964 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1759 2.0516 -1.1836 5 1 1.8673 3.0834 -1.2649 6 6 2.7324 1.4052 -2.2787 7 7 2.5001 1.8521 -3.4947 8 14 3.8108 -0.0991 -2.0266 9 1 2.9910 -1.3275 -2.1811 10 1 4.9009 -0.1013 -3.0352 11 1 4.3982 -0.0642 -0.6632 12 16 2.3797 2.1316 1.4313 13 8 3.3031 3.1659 1.1200 14 8 2.6560 1.0988 2.3673 15 6 0.9099 2.9280 1.9884 16 6 0.6457 4.2334 1.6062 17 6 -0.5054 4.8662 2.0310 18 6 -1.4014 4.2008 2.8547 19 8 -2.5300 4.8232 3.2774 20 6 -1.1378 2.8799 3.2436 21 6 -2.0855 2.1600 4.1133 22 8 -3.0985 2.7115 4.4957 23 8 -1.8280 0.8906 4.4851 24 6 -2.8049 0.2438 5.3428 25 6 0.0287 2.2495 2.8014 26 1 -0.3634 -1.0253 0.0706 27 1 -0.3634 0.5738 0.8526 28 1 -0.3634 0.4515 -0.9232 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8892 1.4005 -4.2599 32 1 1.3422 4.7574 0.9687 33 1 -0.7064 5.8823 1.7251 34 1 -2.4272 5.2994 4.1127 35 1 -2.9028 0.8069 6.2710 36 1 -3.7687 0.2105 4.8347 37 1 -2.4768 -0.7713 5.5660 38 1 0.2390 1.2323 3.0969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271499552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:37 Heat of formation + Delta-G solvation = -154.043802 kcal Electronic energy + Delta-G solvation = -27009.934568 eV Core-core repulsion = 22946.053534 eV Total energy + Delta-G solvation = -4063.881033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.81468 -39.30727 -36.99352 -36.44075 -36.32364 -36.14095 -34.92533 -32.14888 -31.76890 -30.24236 -29.53930 -27.85313 -24.44733 -24.26769 -23.09594 -22.36002 -21.37020 -18.83854 -18.65648 -18.07245 -17.48481 -16.86466 -16.49683 -16.47024 -16.15576 -15.80986 -15.54120 -15.31643 -14.36917 -14.19811 -13.58830 -13.55411 -13.38365 -13.28038 -13.06346 -12.73602 -12.53337 -12.40146 -12.31676 -12.21817 -11.60521 -11.32016 -11.23634 -11.14462 -11.08532 -10.93592 -10.92667 -10.68743 -10.52340 -10.29833 -10.10225 -9.90280 -9.26068 -9.21183 -8.89111 -8.11962 -6.46622 -4.08717 0.41781 0.85338 1.25882 2.35975 2.52914 3.10374 3.27008 3.29843 3.34153 3.87688 3.99374 4.19876 4.42725 4.52906 4.68720 4.87844 4.93917 4.98825 5.01606 5.15117 5.23173 5.35001 5.51874 5.68373 5.69876 5.76486 5.96810 5.98657 5.99579 6.08599 6.21538 6.27637 6.50353 6.53671 6.81446 7.07690 7.38556 7.61738 7.62060 8.20747 9.03850 9.08911 10.62615 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.004600 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.440565 B = 6085.690115 C = 6637.947400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.863 5.863 4 C -0.291 4.291 5 H 0.104 0.896 6 C 0.074 3.926 7 N -0.854 5.854 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.261 1.261 12 S 2.632 3.368 13 O -0.958 6.958 14 O -0.993 6.993 15 C -0.676 4.676 16 C 0.038 3.962 17 C -0.179 4.179 18 C 0.215 3.785 19 O -0.479 6.479 20 C -0.186 4.186 21 C 0.513 3.487 22 O -0.496 6.496 23 O -0.354 6.354 24 C 0.038 3.962 25 C 0.049 3.951 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.275 0.725 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.400 0.600 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.132 0.009 12.739 15.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.696 5.696 4 C -0.428 4.428 5 H 0.121 0.879 6 C -0.136 4.136 7 N -0.491 5.491 8 Si 0.698 3.302 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 S 2.729 3.271 13 O -0.948 6.948 14 O -0.983 6.983 15 C -0.759 4.759 16 C 0.019 3.981 17 C -0.198 4.198 18 C 0.169 3.831 19 O -0.291 6.291 20 C -0.189 4.189 21 C 0.358 3.642 22 O -0.385 6.385 23 O -0.271 6.271 24 C -0.056 4.056 25 C 0.030 3.970 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.902 -0.039 12.793 15.036 hybrid contribution -0.232 -0.360 0.430 0.607 sum -8.134 -0.399 13.223 15.529 Atomic orbital electron populations 1.22170 0.96799 1.00733 1.02610 1.21480 0.94101 0.84073 1.02247 1.52908 1.77322 1.20501 1.18846 1.18624 1.39637 0.99281 0.85261 0.87874 1.25461 0.95226 0.98128 0.94833 1.69827 1.40403 1.40905 0.98001 0.86998 0.81250 0.82699 0.79301 1.19860 1.21227 1.18542 1.05132 0.73618 0.74133 0.74204 1.93473 1.58216 1.59258 1.83820 1.93433 1.83335 1.56622 1.64880 1.31525 1.25078 1.06811 1.12481 1.21175 0.94502 0.91644 0.90776 1.21514 0.94461 1.01888 1.01955 1.18631 0.84126 0.88955 0.91396 1.84712 1.30448 1.69926 1.43972 1.19547 0.97498 0.95832 1.06022 1.20868 0.84644 0.80272 0.78406 1.90846 1.26688 1.67756 1.53220 1.86588 1.49947 1.27470 1.63065 1.23282 0.91695 0.97440 0.93144 1.21153 0.88735 0.99173 0.87985 0.92760 0.93596 0.91217 0.91120 0.90715 0.91429 0.82763 0.83541 0.74135 0.91912 0.91794 0.87823 0.82686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 10.22 37.16 0.38 -2.42 16 2 C 0.11 2.14 5.30 -4.04 -0.02 2.11 16 3 N -0.86 -19.24 2.37 -59.91 -0.14 -19.38 16 4 C -0.29 -7.31 9.27 -15.06 -0.14 -7.45 16 5 H 0.10 2.68 8.06 -52.49 -0.42 2.26 16 6 C 0.07 1.92 5.30 -17.43 -0.09 1.83 16 7 N -0.85 -23.05 13.97 55.49 0.78 -22.27 16 8 Si 0.87 20.14 25.26 -169.99 -4.29 15.85 16 9 H -0.27 -5.88 6.71 56.52 0.38 -5.50 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 12 S 2.63 55.35 5.65 -107.50 -0.61 54.75 16 13 O -0.96 -22.51 16.48 -57.17 -0.94 -23.45 16 14 O -0.99 -21.55 15.83 -57.17 -0.90 -22.45 16 15 C -0.68 -11.73 5.97 -39.64 -0.24 -11.97 16 16 C 0.04 0.59 9.50 -39.53 -0.38 0.22 16 17 C -0.18 -2.37 9.98 -39.48 -0.39 -2.77 16 18 C 0.22 2.99 6.72 -38.67 -0.26 2.73 16 19 O -0.48 -5.97 11.58 -40.50 -0.47 -6.44 16 20 C -0.19 -2.80 5.89 -104.86 -0.62 -3.42 16 21 C 0.51 7.56 7.89 34.46 0.27 7.83 16 22 O -0.50 -7.83 14.95 -26.60 -0.40 -8.23 16 23 O -0.35 -4.66 9.82 -40.63 -0.40 -5.05 16 24 C 0.04 0.35 10.57 101.05 1.07 1.42 16 25 C 0.05 0.78 7.78 -39.18 -0.31 0.47 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.04 0.73 6.79 -51.93 -0.35 0.38 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.07 1.47 3.73 -51.93 -0.19 1.27 16 30 H 0.07 1.38 6.94 -51.93 -0.36 1.02 16 31 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.15 2.31 7.60 -52.49 -0.40 1.91 16 33 H 0.15 1.52 8.06 -52.48 -0.42 1.09 16 34 H 0.40 3.13 9.06 45.56 0.41 3.54 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.16 2.35 7.15 -52.49 -0.38 1.98 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -32.27 337.61 -6.40 -38.67 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -3.38 Total: 4.35 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.72 Total: -11.42 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.63 Total: -41.65 kcal Atomic # 8 Polarization: -62.52 SS G_CDS: -3.11 Total: -65.63 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.29 Total: 15.85 kcal Atomic # 16 Polarization: 55.35 SS G_CDS: -0.61 Total: 54.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.27 -6.40 -38.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271499552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.376 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds