Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34742 * 117.00284 * 2 1 4 4 O 1.21502 * 120.00422 * 0.02562 * 3 2 1 5 5 C 1.47469 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.39813 * 120.09192 * 359.97438 * 5 3 2 7 7 C 1.37658 * 119.90239 * 180.02562 * 6 5 3 8 8 C 1.39040 * 120.09788 * 0.02629 * 7 6 5 9 9 O 1.35697 * 119.90955 * 179.97438 * 8 7 6 10 10 C 1.42904 * 116.99943 * 0.02562 * 9 8 7 11 11 C 1.38996 * 120.18441 * 359.97438 * 8 7 6 12 12 S 1.76195 * 119.95224 * 179.97438 * 11 8 7 13 13 O 1.42102 * 106.40055 * 181.46029 * 12 11 8 14 14 O 1.42094 * 106.40345 * 48.54117 * 12 11 8 15 15 N 1.65594 * 107.21860 * 294.99848 * 12 11 8 16 16 C 1.46507 * 120.00364 * 270.00187 * 15 12 11 17 17 C 1.36934 * 120.00053 * 90.00300 * 15 12 11 18 18 H 1.08004 * 120.00231 * 22.41168 * 17 15 12 19 19 C 1.38812 * 120.00298 * 202.41834 * 17 15 12 20 20 N 1.31625 * 119.99903 * 11.09717 * 19 17 15 21 21 Si 1.86796 * 120.00364 * 191.09736 * 19 17 15 22 22 H 1.48503 * 109.47040 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47102 * 119.99767 * 21 19 17 24 24 H 1.48499 * 109.47425 * 240.00062 * 21 19 17 25 25 C 1.37703 * 120.09128 * 0.25173 * 11 8 7 26 26 H 1.09005 * 109.46931 * 300.00331 * 1 2 3 27 27 H 1.09001 * 109.46987 * 59.99417 * 1 2 3 28 28 H 1.08997 * 109.47652 * 180.02562 * 1 2 3 29 29 H 1.07990 * 120.05076 * 359.97438 * 6 5 3 30 30 H 1.07999 * 119.95464 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47367 * 300.00266 * 10 9 8 32 32 H 1.09009 * 109.46632 * 59.99855 * 10 9 8 33 33 H 1.08997 * 109.47102 * 179.97438 * 10 9 8 34 34 H 1.08998 * 109.47339 * 94.21331 * 16 15 12 35 35 H 1.08996 * 109.47216 * 214.21537 * 16 15 12 36 36 H 1.09005 * 109.46574 * 334.21905 * 16 15 12 37 37 H 0.96996 * 119.99779 * 180.02562 * 20 19 17 38 38 H 1.08001 * 120.04389 * 179.72318 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2005 0.0000 4 8 1.4022 2.2196 0.0005 5 6 3.5365 1.2776 -0.0006 6 6 4.2997 0.1062 -0.0006 7 6 5.6742 0.1826 -0.0006 8 6 6.3035 1.4225 0.0000 9 8 7.6587 1.4934 0.0005 10 6 8.3731 0.2558 -0.0001 11 6 5.5485 2.5895 0.0000 12 16 6.3524 4.1573 0.0014 13 8 5.3228 5.1361 0.0358 14 8 7.3393 4.1032 -1.0195 15 7 7.1698 4.2879 1.4356 16 6 6.5077 4.8699 2.6058 17 6 8.4645 3.8518 1.5279 18 1 9.0701 3.7656 0.6378 19 6 8.9987 3.5203 2.7655 20 7 8.2114 3.4132 3.8149 21 14 10.8349 3.2261 2.9418 22 1 11.4941 3.4075 1.6235 23 1 11.4003 4.1950 3.9149 24 1 11.0703 1.8425 3.4272 25 6 4.1731 2.5219 0.0047 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.8118 -0.8572 0.0003 30 1 6.2646 -0.7217 -0.0002 31 1 8.1094 -0.3165 0.8893 32 1 8.1099 -0.3152 -0.8907 33 1 9.4447 0.4549 -0.0001 34 1 6.0736 4.0741 3.2109 35 1 7.2372 5.4209 3.1993 36 1 5.7198 5.5478 2.2776 37 1 8.5847 3.1819 4.6797 38 1 3.5872 3.4292 0.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273367512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = -148.651993 kcal Electronic energy + Delta-G solvation = -27127.466679 eV Core-core repulsion = 23063.819452 eV Total energy + Delta-G solvation = -4063.647227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.46327 -39.59589 -37.15918 -36.20020 -35.67858 -35.62921 -34.34649 -31.45901 -31.21020 -30.42935 -27.93290 -26.94568 -26.41736 -23.53645 -23.47679 -22.65135 -20.80055 -18.77404 -18.20139 -17.62040 -17.06160 -16.83656 -16.41312 -16.28296 -15.70521 -15.43986 -15.31835 -14.57923 -14.30327 -14.13044 -13.87838 -13.50594 -13.42060 -13.16558 -12.81695 -12.58875 -12.37962 -12.19027 -11.81455 -11.65368 -11.38680 -11.21490 -11.04709 -11.00677 -10.87768 -10.79836 -10.64604 -10.58982 -10.46221 -10.17453 -10.09188 -9.75721 -9.27294 -9.06386 -8.16444 -8.06231 -6.54123 -3.98196 0.95482 1.33225 1.80920 2.66513 2.74994 3.05944 3.13686 3.19955 3.50597 3.82395 3.98647 4.48880 4.79842 4.81277 4.91176 4.99027 5.03628 5.09920 5.10424 5.29207 5.37178 5.39966 5.42801 5.74589 5.80417 5.87702 5.93703 6.21399 6.30980 6.36344 6.44346 6.52262 6.85030 6.90478 7.14412 7.28596 7.46297 7.53656 7.85393 8.32252 8.67376 9.15242 10.41977 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.016565 B = 0.004628 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.925329 B = 6048.923745 C = 6560.314852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.515 3.485 4 O -0.510 6.510 5 C -0.204 4.204 6 C 0.007 3.993 7 C -0.250 4.250 8 C 0.264 3.736 9 O -0.271 6.271 10 C 0.025 3.975 11 C -0.704 4.704 12 S 2.535 3.465 13 O -1.003 7.003 14 O -0.974 6.974 15 N -0.802 5.802 16 C 0.121 3.879 17 C -0.220 4.220 18 H 0.118 0.882 19 C 0.029 3.971 20 N -0.838 5.838 21 Si 0.923 3.077 22 H -0.261 1.261 23 H -0.277 1.277 24 H -0.279 1.279 25 C 0.069 3.931 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.272 0.728 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 -10.341 -2.238 11.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.362 3.638 4 O -0.399 6.399 5 C -0.206 4.206 6 C -0.012 4.012 7 C -0.269 4.269 8 C 0.213 3.787 9 O -0.181 6.181 10 C -0.070 4.070 11 C -0.780 4.780 12 S 2.630 3.370 13 O -0.992 6.992 14 O -0.964 6.964 15 N -0.626 5.626 16 C -0.025 4.025 17 C -0.368 4.368 18 H 0.136 0.864 19 C -0.183 4.183 20 N -0.479 5.479 21 Si 0.748 3.252 22 H -0.185 1.185 23 H -0.203 1.203 24 H -0.205 1.205 25 C 0.050 3.950 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.911 -9.340 -2.908 10.946 hybrid contribution 0.223 -1.495 0.564 1.613 sum -4.687 -10.835 -2.345 12.036 Atomic orbital electron populations 1.23229 0.76429 1.03386 1.02620 1.86535 1.23239 1.33096 1.84855 1.21127 0.89024 0.81224 0.72465 1.90838 1.66754 1.35874 1.46473 1.18990 0.88651 0.95272 1.17664 1.21215 0.93031 0.97583 0.89341 1.21261 0.95582 0.96978 1.13110 1.18753 0.83170 0.92609 0.84120 1.86398 1.14266 1.32396 1.84990 1.23158 0.97680 0.85295 1.00906 1.31709 1.02860 1.25042 1.18393 1.11629 0.72409 0.75418 0.77535 1.93334 1.58972 1.59118 1.87814 1.93362 1.58047 1.87004 1.57984 1.54148 1.16718 1.63022 1.28733 1.21333 0.96386 0.97107 0.87645 1.20085 0.83811 1.37271 0.95657 0.86415 1.25739 1.00739 0.95842 0.95983 1.70129 1.35521 1.41651 1.00597 0.85897 0.81834 0.78191 0.79260 1.18456 1.20258 1.20481 1.20860 0.92125 0.97153 0.84838 0.91885 0.91946 0.88246 0.84513 0.84551 0.92356 0.92764 0.87651 0.92975 0.90653 0.93695 0.91710 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.44 16 2 O -0.36 -4.95 9.81 -40.61 -0.40 -5.35 16 3 C 0.52 8.76 7.89 34.49 0.27 9.03 16 4 O -0.51 -9.85 16.13 -19.27 -0.31 -10.16 16 5 C -0.20 -3.63 5.87 -104.97 -0.62 -4.25 16 6 C 0.01 0.10 9.61 -39.20 -0.38 -0.27 16 7 C -0.25 -3.96 9.01 -39.50 -0.36 -4.32 16 8 C 0.26 5.19 6.65 -39.00 -0.26 4.93 16 9 O -0.27 -5.32 7.77 -28.80 -0.22 -5.54 16 10 C 0.02 0.34 9.81 101.05 0.99 1.33 16 11 C -0.70 -15.32 5.91 -39.50 -0.23 -15.56 16 12 S 2.53 61.68 5.25 -107.50 -0.56 61.12 16 13 O -1.00 -25.65 15.52 -57.17 -0.89 -26.54 16 14 O -0.97 -25.54 16.08 -62.57 -1.01 -26.55 16 15 N -0.80 -19.48 3.31 -66.68 -0.22 -19.70 16 16 C 0.12 2.77 8.92 59.85 0.53 3.31 16 17 C -0.22 -5.34 7.97 -15.06 -0.12 -5.46 16 18 H 0.12 2.89 7.16 -52.48 -0.38 2.52 16 19 C 0.03 0.66 5.13 -17.43 -0.09 0.57 16 20 N -0.84 -19.86 10.58 55.49 0.59 -19.27 16 21 Si 0.92 17.91 29.57 -169.99 -5.03 12.88 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 25 C 0.07 1.42 9.09 -39.20 -0.36 1.06 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.14 1.63 7.60 -52.49 -0.40 1.23 16 30 H 0.14 1.67 6.28 -52.49 -0.33 1.34 16 31 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 32 H 0.05 0.60 7.65 -51.92 -0.40 0.21 16 33 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.05 1.20 7.42 -51.93 -0.39 0.82 16 35 H 0.07 1.71 7.18 -51.93 -0.37 1.34 16 36 H 0.04 0.97 6.93 -51.93 -0.36 0.61 16 37 H 0.27 6.05 8.31 -40.82 -0.34 5.71 16 38 H 0.15 3.19 6.91 -52.49 -0.36 2.83 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -31.59 337.40 -6.71 -38.30 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -4.20 Total: 3.91 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 0.46 Total: -8.19 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.37 Total: -38.98 kcal Atomic # 8 Polarization: -71.31 SS G_CDS: -2.83 Total: -74.13 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 61.68 SS G_CDS: -0.56 Total: 61.12 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.59 -6.71 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273367512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.349 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds