Wall clock time and date at job start Tue Mar 31 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 116.99833 * 2 1 4 4 O 1.20831 * 120.00315 * 359.97438 * 3 2 1 5 5 C 1.50707 * 120.00075 * 180.02562 * 3 2 1 6 6 O 1.42891 * 109.47317 * 179.97438 * 5 3 2 7 7 C 1.35898 * 117.00085 * 179.97438 * 6 5 3 8 8 C 1.38733 * 120.05579 * 180.02562 * 7 6 5 9 9 C 1.38144 * 119.94432 * 180.02562 * 8 7 6 10 10 C 1.38274 * 120.05493 * 0.02562 * 9 8 7 11 11 S 1.76197 * 119.94341 * 179.97438 * 10 9 8 12 12 O 1.42097 * 106.40371 * 336.45988 * 11 10 9 13 13 O 1.42103 * 106.40032 * 203.54104 * 11 10 9 14 14 N 1.65594 * 107.22207 * 90.00133 * 11 10 9 15 15 C 1.46502 * 120.00296 * 89.99485 * 14 11 10 16 16 C 1.36936 * 120.00263 * 270.00384 * 14 11 10 17 17 H 1.08000 * 119.99911 * 23.08484 * 16 14 11 18 18 C 1.38808 * 120.00231 * 203.09662 * 16 14 11 19 19 N 1.31623 * 120.00217 * 11.88792 * 18 16 14 20 20 Si 1.86800 * 120.00106 * 191.89322 * 18 16 14 21 21 H 1.48494 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47338 * 120.00131 * 20 18 16 23 23 H 1.48504 * 109.47246 * 239.99873 * 20 18 16 24 24 C 1.38262 * 120.11020 * 0.25802 * 10 9 8 25 25 C 1.38149 * 120.05812 * 359.44774 * 24 10 9 26 26 H 1.09003 * 109.47354 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47093 * 300.00231 * 1 2 3 28 28 H 1.09004 * 109.47452 * 60.00181 * 1 2 3 29 29 H 1.08999 * 109.47188 * 59.99717 * 5 3 2 30 30 H 1.08995 * 109.46814 * 300.00246 * 5 3 2 31 31 H 1.08001 * 120.03204 * 359.97438 * 8 7 6 32 32 H 1.07995 * 119.97563 * 179.97438 * 9 8 7 33 33 H 1.09001 * 109.47035 * 95.05876 * 15 14 11 34 34 H 1.08990 * 109.47616 * 215.06116 * 15 14 11 35 35 H 1.09001 * 109.47201 * 335.06293 * 15 14 11 36 36 H 0.97000 * 120.00147 * 179.97438 * 19 18 16 37 37 H 1.08004 * 119.96977 * 179.70834 * 24 10 9 38 38 H 1.07996 * 120.03130 * 180.25765 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6452 -0.0011 7 6 5.3076 2.8935 -0.0011 8 6 5.7712 4.2011 -0.0010 9 6 7.1299 4.4509 -0.0016 10 6 8.0274 3.3990 -0.0027 11 16 9.7597 3.7210 -0.0041 12 8 9.9254 5.0232 -0.5482 13 8 10.3821 2.5659 -0.5496 14 7 10.2431 3.8100 1.5772 15 6 10.6888 2.6020 2.2761 16 6 10.2262 5.0127 2.2317 17 1 9.5791 5.8058 1.8874 18 6 11.0410 5.2126 3.3376 19 7 11.9923 4.3476 3.6192 20 14 10.7873 6.7091 4.4264 21 1 9.6618 7.5208 3.8978 22 1 10.4733 6.2678 5.8092 23 1 12.0256 7.5288 4.4377 24 6 7.5678 2.0951 -0.0087 25 6 6.2101 1.8399 -0.0021 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9564 0.7806 0.8891 31 1 5.0707 5.0230 -0.0014 32 1 7.4914 5.4685 -0.0019 33 1 11.7750 2.5299 2.2205 34 1 10.3809 2.6520 3.3204 35 1 10.2420 1.7253 1.8072 36 1 12.5619 4.4875 4.3918 37 1 8.2709 1.2752 -0.0144 38 1 5.8516 0.8212 -0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273489250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:04 Heat of formation + Delta-G solvation = -144.088878 kcal Electronic energy + Delta-G solvation = -25531.611297 eV Core-core repulsion = 21468.161942 eV Total energy + Delta-G solvation = -4063.449355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.10060 -40.10077 -37.66530 -36.76128 -36.28471 -35.42670 -34.85004 -31.37339 -31.11341 -30.67090 -29.46715 -27.40033 -26.24855 -23.44692 -23.12288 -22.77712 -21.37782 -18.88204 -18.62016 -17.83964 -17.60049 -17.38488 -17.24898 -16.56324 -16.32230 -15.89753 -15.71944 -14.66473 -14.53179 -14.31458 -13.97343 -13.79473 -13.55270 -13.38968 -13.14089 -12.90238 -12.80889 -12.50286 -12.43036 -11.87007 -11.49497 -11.31215 -11.26960 -11.21362 -11.16137 -11.04952 -10.90637 -10.81879 -10.58370 -10.32374 -10.26907 -9.98248 -9.08621 -9.03400 -8.58541 -7.89434 -6.10089 -3.82690 0.99215 1.34727 1.45091 1.66364 1.66471 3.14907 3.25197 3.33265 3.36755 3.52582 4.14445 4.15707 4.45621 4.47870 4.49326 4.63748 4.69472 4.72526 4.72907 4.76613 5.05221 5.14239 5.20443 5.38061 5.45608 5.70629 5.79767 5.93599 6.01634 6.14840 6.27982 6.37102 6.61292 6.92098 7.07514 7.21128 7.23142 7.53945 7.70245 8.50473 9.06470 9.43376 10.93848 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018160 B = 0.002898 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.503014 B = 9660.762303 C =10231.812120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.464 3.536 4 O -0.482 6.482 5 C 0.066 3.934 6 O -0.294 6.294 7 C 0.165 3.835 8 C -0.167 4.167 9 C 0.024 3.976 10 C -0.696 4.696 11 S 2.678 3.322 12 O -0.965 6.965 13 O -0.985 6.985 14 N -0.853 5.853 15 C 0.136 3.864 16 C -0.316 4.316 17 H 0.097 0.903 18 C 0.039 3.961 19 N -0.887 5.887 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.017 3.983 25 C -0.234 4.234 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.149 0.851 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.262 0.738 37 H 0.142 0.858 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.036 -10.018 -4.928 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.367 6.367 5 C -0.010 4.010 6 O -0.207 6.207 7 C 0.120 3.880 8 C -0.187 4.187 9 C 0.005 3.995 10 C -0.779 4.779 11 S 2.766 3.234 12 O -0.955 6.955 13 O -0.975 6.975 14 N -0.688 5.688 15 C -0.010 4.010 16 C -0.445 4.445 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.527 5.527 20 Si 0.743 3.257 21 H -0.194 1.194 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.002 4.002 25 C -0.253 4.253 26 H 0.124 0.876 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.156 0.844 32 H 0.167 0.833 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.041 0.959 36 H 0.073 0.927 37 H 0.160 0.840 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.837 -9.528 -5.548 20.970 hybrid contribution -0.986 0.357 1.084 1.509 sum -18.824 -9.171 -4.463 21.409 Atomic orbital electron populations 1.23351 0.75176 1.04111 1.02964 1.86443 1.24168 1.32286 1.84369 1.22978 0.90967 0.81979 0.73588 1.90740 1.66639 1.36168 1.43179 1.21899 0.88943 0.84220 1.05961 1.86075 1.21325 1.24650 1.88669 1.19133 0.80724 0.94675 0.93501 1.20526 0.96032 0.94068 1.08026 1.20814 0.91292 0.99127 0.88275 1.31696 1.29118 0.99568 1.17559 1.02137 0.74278 0.73001 0.73969 1.93481 1.85193 1.39091 1.77712 1.93478 1.73837 1.51996 1.78186 1.52649 1.75743 1.13122 1.27305 1.21113 1.00248 0.82650 0.96973 1.19134 1.23284 0.90067 1.12051 0.88518 1.25125 0.94636 0.98041 0.98736 1.70072 1.18029 1.36505 1.28114 0.86050 0.78317 0.81489 0.79816 1.19420 1.20955 1.20882 1.20729 0.95093 0.95447 0.88941 1.21276 0.94183 0.98190 1.11657 0.87565 0.91542 0.91565 0.87196 0.87110 0.84374 0.83310 0.91937 0.91982 0.95941 0.92720 0.84017 0.84838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.86 10.57 -39.24 -0.41 -3.27 16 3 C 0.46 4.66 8.03 36.01 0.29 4.95 16 4 O -0.48 -6.58 16.25 -25.48 -0.41 -6.99 16 5 C 0.07 0.57 5.33 36.01 0.19 0.76 16 6 O -0.29 -3.73 9.67 -39.37 -0.38 -4.11 16 7 C 0.16 2.26 6.69 -39.21 -0.26 1.99 16 8 C -0.17 -2.46 9.99 -39.43 -0.39 -2.85 16 9 C 0.02 0.40 9.52 -39.60 -0.38 0.02 16 10 C -0.70 -12.50 5.98 -39.56 -0.24 -12.74 16 11 S 2.68 58.40 5.60 -107.50 -0.60 57.80 16 12 O -0.96 -23.28 16.37 -57.17 -0.94 -24.22 16 13 O -0.98 -22.34 16.24 -57.17 -0.93 -23.27 16 14 N -0.85 -20.64 3.31 -66.69 -0.22 -20.86 16 15 C 0.14 3.12 8.60 59.85 0.51 3.64 16 16 C -0.32 -8.22 9.17 -15.06 -0.14 -8.35 16 17 H 0.10 2.43 7.68 -52.49 -0.40 2.03 16 18 C 0.04 1.02 5.12 -17.43 -0.09 0.93 16 19 N -0.89 -24.00 10.65 55.49 0.59 -23.41 16 20 Si 0.92 20.48 29.57 -169.99 -5.03 15.45 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.02 0.26 9.52 -39.61 -0.38 -0.11 16 25 C -0.23 -2.98 9.04 -39.43 -0.36 -3.34 16 26 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.11 0.67 7.66 -51.93 -0.40 0.28 16 30 H 0.11 0.71 7.66 -51.93 -0.40 0.31 16 31 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.15 2.39 7.61 -52.49 -0.40 1.99 16 33 H 0.06 1.54 7.35 -51.93 -0.38 1.16 16 34 H 0.06 1.45 7.31 -51.93 -0.38 1.07 16 35 H 0.02 0.43 7.61 -51.93 -0.40 0.04 16 36 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.14 1.99 7.61 -52.48 -0.40 1.59 16 38 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 LS Contribution 344.63 15.07 5.19 5.19 Total: -1.00 -34.40 344.63 -7.61 -42.01 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.31 Total: -0.50 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -0.17 Total: -13.82 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.37 Total: -44.27 kcal Atomic # 8 Polarization: -58.79 SS G_CDS: -3.07 Total: -61.86 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 16 Polarization: 58.40 SS G_CDS: -0.60 Total: 57.80 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.40 -7.61 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273489250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.078 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds