Wall clock time and date at job start Tue Mar 31 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47366 * 2 1 4 4 C 1.36942 * 119.99838 * 275.97178 * 3 2 1 5 5 H 1.07997 * 119.99742 * 146.59775 * 4 3 2 6 6 C 1.38809 * 119.99947 * 326.59793 * 4 3 2 7 7 N 1.31613 * 120.00432 * 336.10456 * 6 4 3 8 8 Si 1.86806 * 119.99831 * 156.10490 * 6 4 3 9 9 H 1.48503 * 109.46811 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47212 * 120.00018 * 8 6 4 11 11 H 1.48497 * 109.47180 * 240.00317 * 8 6 4 12 12 S 1.65597 * 119.99797 * 95.97499 * 3 2 1 13 13 O 1.42101 * 106.39876 * 156.46145 * 12 3 2 14 14 O 1.42096 * 106.40598 * 23.53899 * 12 3 2 15 15 C 1.76197 * 107.21627 * 269.99835 * 12 3 2 16 16 C 1.38560 * 119.84750 * 90.00099 * 15 12 3 17 17 C 1.38054 * 120.40621 * 180.02562 * 16 15 12 18 18 C 1.38704 * 120.08785 * 359.97438 * 17 16 15 19 19 O 1.35645 * 120.15615 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99496 * 0.02779 * 19 18 17 21 21 C 1.40195 * 119.69497 * 0.02562 * 18 17 16 22 22 C 1.47397 * 120.20174 * 180.02562 * 21 18 17 23 23 O 1.21508 * 120.00096 * 359.71847 * 22 21 18 24 24 O 1.34750 * 120.00021 * 179.97438 * 22 21 18 25 25 C 1.37764 * 119.84853 * 270.28122 * 15 12 3 26 26 H 1.09000 * 109.47227 * 300.00422 * 1 2 3 27 27 H 1.09007 * 109.47008 * 60.00102 * 1 2 3 28 28 H 1.09003 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46788 * 239.99672 * 2 1 3 30 30 H 1.08998 * 109.46946 * 120.00499 * 2 1 3 31 31 H 0.97003 * 120.00384 * 180.02562 * 7 6 4 32 32 H 1.08005 * 119.79514 * 0.02562 * 16 15 12 33 33 H 1.08002 * 119.95635 * 179.97438 * 17 16 15 34 34 H 1.08996 * 109.47810 * 59.99737 * 20 19 18 35 35 H 1.09005 * 109.46803 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.46869 * 299.99247 * 20 19 18 37 37 H 0.96705 * 116.99933 * 179.97438 * 24 22 21 38 38 H 1.08004 * 120.04868 * 359.97438 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1303 2.0678 -1.1795 5 1 1.9553 3.1333 -1.2028 6 6 2.4686 1.3944 -2.3452 7 7 3.1245 0.2552 -2.2805 8 14 1.9928 2.1051 -4.0060 9 1 1.2664 3.3849 -3.8070 10 1 3.2178 2.3503 -4.8088 11 1 1.1155 1.1447 -4.7224 12 16 2.4351 2.1120 1.4264 13 8 3.3461 3.1507 1.0938 14 8 2.7471 1.0666 2.3368 15 6 0.9882 2.9002 2.0507 16 6 0.1339 2.2066 2.8927 17 6 -1.0032 2.8128 3.3882 18 6 -1.2978 4.1241 3.0453 19 8 -2.4149 4.7208 3.5309 20 6 -3.2453 3.9396 4.3924 21 6 -0.4361 4.8296 2.1937 22 6 -0.7381 6.2237 1.8225 23 8 -1.7390 6.7633 2.2508 24 8 0.0932 6.8982 1.0040 25 6 0.7085 4.2014 1.6949 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.3613 -0.2152 -3.0951 32 1 0.3590 1.1854 3.1630 33 1 -1.6642 2.2652 4.0436 34 1 -2.6734 3.6323 5.2679 35 1 -4.1024 4.5345 4.7084 36 1 -3.5941 3.0561 3.8577 37 1 -0.1469 7.8099 0.7887 38 1 1.3752 4.7368 1.0350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273639991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:40 Heat of formation + Delta-G solvation = -160.191741 kcal Electronic energy + Delta-G solvation = -26997.600593 eV Core-core repulsion = 22933.452965 eV Total energy + Delta-G solvation = -4064.147628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.76931 -39.40956 -37.51337 -36.21652 -35.92731 -35.89159 -34.73143 -31.75484 -31.62653 -30.46151 -29.25958 -27.65944 -24.73921 -24.62929 -22.63573 -21.81341 -21.47334 -18.69708 -18.43329 -18.03111 -17.53835 -16.76216 -16.31785 -16.23061 -16.11749 -15.84482 -15.33493 -14.74654 -14.56747 -14.38456 -13.91126 -13.51214 -13.23193 -13.05579 -12.95809 -12.78822 -12.34871 -12.19356 -11.99162 -11.49893 -11.46458 -11.43763 -11.28482 -11.05534 -10.99439 -10.93633 -10.86985 -10.60902 -10.39933 -10.21285 -10.17255 -9.81852 -9.23402 -9.12161 -8.66105 -7.74595 -6.27750 -3.95940 0.62025 1.01755 1.46252 2.49727 2.92748 3.03394 3.19300 3.28862 3.33206 3.50849 4.12910 4.43826 4.50949 4.63984 4.71773 4.88650 4.90268 5.01890 5.05636 5.20326 5.24723 5.34985 5.57520 5.68469 5.82266 5.99761 6.03354 6.17365 6.25674 6.33031 6.48351 6.52548 6.54640 6.90067 7.04709 7.27146 7.40447 7.77339 7.97778 8.41188 8.98830 9.36270 10.73936 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004950 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.916774 B = 5655.004448 C = 6389.175083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.840 5.840 4 C -0.286 4.286 5 H 0.093 0.907 6 C 0.040 3.960 7 N -0.856 5.856 8 Si 0.913 3.087 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.281 1.281 12 S 2.636 3.364 13 O -0.968 6.968 14 O -0.995 6.995 15 C -0.704 4.704 16 C 0.052 3.948 17 C -0.245 4.245 18 C 0.227 3.773 19 O -0.283 6.283 20 C 0.018 3.982 21 C -0.190 4.190 22 C 0.532 3.468 23 O -0.505 6.505 24 O -0.509 6.509 25 C 0.080 3.920 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.267 0.733 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.413 0.587 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 4.151 8.334 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.019 4.019 3 N -0.672 5.672 4 C -0.421 4.421 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.496 5.496 8 Si 0.739 3.261 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.207 1.207 12 S 2.731 3.269 13 O -0.957 6.957 14 O -0.985 6.985 15 C -0.786 4.786 16 C 0.033 3.967 17 C -0.265 4.265 18 C 0.178 3.822 19 O -0.193 6.193 20 C -0.077 4.077 21 C -0.192 4.192 22 C 0.377 3.623 23 O -0.395 6.395 24 O -0.321 6.321 25 C 0.061 3.939 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.134 0.866 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.271 0.729 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -10.099 4.019 8.971 14.094 hybrid contribution -1.231 0.819 -0.769 1.667 sum -11.330 4.839 8.203 14.801 Atomic orbital electron populations 1.22206 0.98775 1.00016 1.01239 1.21400 0.91573 0.84004 1.04895 1.52622 1.76509 1.20621 1.17474 1.19131 1.45205 0.94029 0.83780 0.88928 1.25289 0.95048 0.96818 0.99567 1.69971 1.33907 1.16869 1.28847 0.86098 0.78534 0.79264 0.82155 1.19142 1.20755 1.20686 1.04708 0.73649 0.73946 0.74570 1.93453 1.59246 1.59462 1.83573 1.93414 1.82627 1.55852 1.66596 1.31551 1.26078 1.06334 1.14672 1.20970 0.89298 0.98954 0.87466 1.21256 1.02075 0.94530 1.08618 1.19146 0.84516 0.90405 0.88138 1.86333 1.31915 1.40445 1.60644 1.23241 0.94307 0.97006 0.93098 1.18417 0.99941 0.92619 1.08266 1.20436 0.80143 0.86400 0.75357 1.90905 1.26818 1.69293 1.52457 1.84617 1.52989 1.31977 1.62529 1.21168 0.91416 0.91734 0.89578 0.94607 0.92165 0.93359 0.86553 0.92186 0.92282 0.83486 0.83904 0.92141 0.87772 0.92052 0.72901 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.20 37.16 0.38 -2.52 16 2 C 0.11 2.32 6.01 -4.04 -0.02 2.30 16 3 N -0.84 -19.60 2.85 -59.91 -0.17 -19.77 16 4 C -0.29 -7.13 8.87 -15.06 -0.13 -7.26 16 5 H 0.09 2.25 7.94 -52.49 -0.42 1.83 16 6 C 0.04 1.00 4.98 -17.43 -0.09 0.91 16 7 N -0.86 -22.24 11.27 55.49 0.63 -21.62 16 8 Si 0.91 19.49 29.62 -169.99 -5.03 14.45 16 9 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 S 2.64 58.25 5.65 -107.50 -0.61 57.64 16 13 O -0.97 -24.00 16.48 -57.17 -0.94 -24.94 16 14 O -1.00 -22.92 15.81 -57.17 -0.90 -23.82 16 15 C -0.70 -12.76 5.97 -39.64 -0.24 -13.00 16 16 C 0.05 0.80 8.50 -39.53 -0.34 0.46 16 17 C -0.25 -3.23 9.03 -39.48 -0.36 -3.58 16 18 C 0.23 3.36 6.70 -38.68 -0.26 3.10 16 19 O -0.28 -3.91 8.57 -40.52 -0.35 -4.26 16 20 C 0.02 0.16 9.81 101.05 0.99 1.15 16 21 C -0.19 -3.10 5.89 -104.86 -0.62 -3.72 16 22 C 0.53 8.34 8.26 34.46 0.28 8.62 16 23 O -0.51 -8.74 15.95 -26.59 -0.42 -9.17 16 24 O -0.51 -6.54 12.68 -40.63 -0.52 -7.05 16 25 C 0.08 1.40 9.08 -39.18 -0.36 1.05 16 26 H 0.03 0.57 7.11 -51.93 -0.37 0.20 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.12 2.75 5.31 -51.92 -0.28 2.48 16 30 H 0.06 1.24 6.90 -51.93 -0.36 0.88 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.15 2.03 7.60 -52.48 -0.40 1.63 16 33 H 0.14 1.35 6.30 -52.49 -0.33 1.02 16 34 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 37 H 0.41 3.12 9.11 45.56 0.42 3.53 16 38 H 0.16 2.81 7.16 -52.48 -0.38 2.43 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -33.50 338.98 -7.27 -40.77 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -3.31 Total: 5.15 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.75 Total: -12.49 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.45 Total: -41.38 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -3.13 Total: -69.25 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.45 kcal Atomic # 16 Polarization: 58.25 SS G_CDS: -0.61 Total: 57.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.50 -7.27 -40.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273639991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.423 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds