Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47366 * 2 1 4 4 C 1.36942 * 119.99838 * 275.97178 * 3 2 1 5 5 H 1.07997 * 119.99742 * 146.59775 * 4 3 2 6 6 C 1.38809 * 119.99947 * 326.59793 * 4 3 2 7 7 N 1.31613 * 120.00432 * 336.10456 * 6 4 3 8 8 Si 1.86806 * 119.99831 * 156.10490 * 6 4 3 9 9 H 1.48503 * 109.46811 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47212 * 120.00018 * 8 6 4 11 11 H 1.48497 * 109.47180 * 240.00317 * 8 6 4 12 12 S 1.65597 * 119.99797 * 95.97499 * 3 2 1 13 13 O 1.42101 * 106.39876 * 156.46145 * 12 3 2 14 14 O 1.42096 * 106.40598 * 23.53899 * 12 3 2 15 15 C 1.76197 * 107.21627 * 269.99835 * 12 3 2 16 16 C 1.38560 * 119.84750 * 90.00099 * 15 12 3 17 17 C 1.38054 * 120.40621 * 180.02562 * 16 15 12 18 18 C 1.38704 * 120.08785 * 359.97438 * 17 16 15 19 19 O 1.35645 * 120.15615 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99496 * 0.02779 * 19 18 17 21 21 C 1.40195 * 119.69497 * 0.02562 * 18 17 16 22 22 C 1.47397 * 120.20174 * 180.02562 * 21 18 17 23 23 O 1.21508 * 120.00096 * 359.71847 * 22 21 18 24 24 O 1.34750 * 120.00021 * 179.97438 * 22 21 18 25 25 C 1.37764 * 119.84853 * 270.28122 * 15 12 3 26 26 H 1.09000 * 109.47227 * 300.00422 * 1 2 3 27 27 H 1.09007 * 109.47008 * 60.00102 * 1 2 3 28 28 H 1.09003 * 109.47312 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46788 * 239.99672 * 2 1 3 30 30 H 1.08998 * 109.46946 * 120.00499 * 2 1 3 31 31 H 0.97003 * 120.00384 * 180.02562 * 7 6 4 32 32 H 1.08005 * 119.79514 * 0.02562 * 16 15 12 33 33 H 1.08002 * 119.95635 * 179.97438 * 17 16 15 34 34 H 1.08996 * 109.47810 * 59.99737 * 20 19 18 35 35 H 1.09005 * 109.46803 * 180.02562 * 20 19 18 36 36 H 1.09001 * 109.46869 * 299.99247 * 20 19 18 37 37 H 0.96705 * 116.99933 * 179.97438 * 24 22 21 38 38 H 1.08004 * 120.04868 * 359.97438 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1303 2.0678 -1.1795 5 1 1.9553 3.1333 -1.2028 6 6 2.4686 1.3944 -2.3452 7 7 3.1245 0.2552 -2.2805 8 14 1.9928 2.1051 -4.0060 9 1 1.2664 3.3849 -3.8070 10 1 3.2178 2.3503 -4.8088 11 1 1.1155 1.1447 -4.7224 12 16 2.4351 2.1120 1.4264 13 8 3.3461 3.1507 1.0938 14 8 2.7471 1.0666 2.3368 15 6 0.9882 2.9002 2.0507 16 6 0.1339 2.2066 2.8927 17 6 -1.0032 2.8128 3.3882 18 6 -1.2978 4.1241 3.0453 19 8 -2.4149 4.7208 3.5309 20 6 -3.2453 3.9396 4.3924 21 6 -0.4361 4.8296 2.1937 22 6 -0.7381 6.2237 1.8225 23 8 -1.7390 6.7633 2.2508 24 8 0.0932 6.8982 1.0040 25 6 0.7085 4.2014 1.6949 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.3613 -0.2152 -3.0951 32 1 0.3590 1.1854 3.1630 33 1 -1.6642 2.2652 4.0436 34 1 -2.6734 3.6323 5.2679 35 1 -4.1024 4.5345 4.7084 36 1 -3.5941 3.0561 3.8577 37 1 -0.1469 7.8099 0.7887 38 1 1.3752 4.7368 1.0350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273639991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = -184.488878 kcal Electronic energy + Delta-G solvation = -26998.654196 eV Core-core repulsion = 22933.452965 eV Total energy + Delta-G solvation = -4065.201231 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.89452 -40.51100 -38.65310 -38.03214 -37.65597 -37.05929 -36.57412 -33.52498 -32.86410 -31.64855 -30.90401 -28.43169 -26.46436 -25.92208 -23.84864 -23.31436 -22.78125 -20.31255 -19.71254 -19.21277 -18.95999 -18.34263 -18.03670 -17.41738 -17.17531 -17.12204 -16.50379 -16.38992 -16.11516 -15.66437 -15.25784 -14.94338 -14.49101 -14.37324 -14.27181 -14.07474 -13.92431 -13.61219 -13.24946 -13.08550 -12.90217 -12.79642 -12.64704 -12.59899 -12.55605 -12.44661 -12.35421 -12.06713 -11.97116 -11.90239 -11.58407 -11.47303 -10.90612 -10.42284 -9.85520 -9.55751 -8.14124 -5.88101 -0.58220 -0.32274 -0.13106 1.30768 1.49328 1.53585 1.65150 1.97479 2.00363 2.23233 2.43881 2.73091 2.94439 3.21935 3.36131 3.58997 3.70488 3.94525 4.17311 4.27573 4.31642 4.36564 4.45797 4.47094 4.60911 4.72595 4.78276 4.78800 4.87204 4.93277 5.01365 5.29949 5.34502 5.51362 5.54888 5.68082 6.01259 6.07987 6.55361 6.94857 7.12190 7.48988 8.87570 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.004950 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.916774 B = 5655.004448 C = 6389.175083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.101 3.899 3 N -0.853 5.853 4 C -0.306 4.306 5 H 0.090 0.910 6 C 0.000 4.000 7 N -0.890 5.890 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.285 1.285 11 H -0.274 1.274 12 S 2.648 3.352 13 O -1.006 7.006 14 O -1.010 7.010 15 C -0.714 4.714 16 C 0.049 3.951 17 C -0.225 4.225 18 C 0.233 3.767 19 O -0.300 6.300 20 C 0.003 3.997 21 C -0.207 4.207 22 C 0.535 3.465 23 O -0.525 6.525 24 O -0.508 6.508 25 C 0.072 3.928 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.061 0.939 31 H 0.268 0.732 32 H 0.164 0.836 33 H 0.189 0.811 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.434 0.566 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 4.212 9.621 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 N -0.685 5.685 4 C -0.440 4.440 5 H 0.107 0.893 6 C -0.204 4.204 7 N -0.530 5.530 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.211 1.211 11 H -0.199 1.199 12 S 2.748 3.252 13 O -0.996 6.996 14 O -1.000 7.000 15 C -0.802 4.802 16 C 0.029 3.971 17 C -0.244 4.244 18 C 0.183 3.817 19 O -0.210 6.210 20 C -0.090 4.090 21 C -0.209 4.209 22 C 0.381 3.619 23 O -0.417 6.417 24 O -0.323 6.323 25 C 0.052 3.948 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.181 0.819 33 H 0.206 0.794 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.296 0.704 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.769 4.063 10.208 16.845 hybrid contribution -0.510 0.880 -0.982 1.414 sum -13.279 4.944 9.226 16.909 Atomic orbital electron populations 1.22100 0.95747 1.01902 1.01538 1.21457 0.94154 0.83140 1.03808 1.52692 1.77146 1.21200 1.17448 1.19285 1.45731 0.94114 0.84886 0.89266 1.25997 0.94900 0.97175 1.02362 1.70068 1.35172 1.18198 1.29605 0.85242 0.78041 0.78933 0.78397 1.18471 1.21144 1.19933 1.03587 0.74413 0.73270 0.73936 1.93403 1.61882 1.60163 1.84164 1.93386 1.83715 1.56562 1.66368 1.30794 1.25461 1.06770 1.17152 1.21222 0.89438 0.99622 0.86773 1.21633 1.01301 0.93769 1.07685 1.19312 0.84515 0.90743 0.87115 1.86332 1.31610 1.42008 1.61100 1.23689 0.94400 0.97754 0.93194 1.18572 1.00044 0.93234 1.09099 1.20378 0.79949 0.86346 0.75260 1.90887 1.27638 1.69707 1.53437 1.84585 1.52385 1.33647 1.61654 1.21047 0.92065 0.91645 0.90016 0.92754 0.93356 0.90639 0.88856 0.92031 0.92197 0.81852 0.79363 0.90119 0.85961 0.90188 0.70370 0.83219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.20 71.98 0.73 -4.51 16 2 C 0.10 4.36 6.01 86.38 0.52 4.88 16 3 N -0.85 -40.51 2.85 -343.45 -0.98 -41.49 16 4 C -0.31 -15.63 8.87 84.03 0.75 -14.88 16 5 H 0.09 4.48 7.94 -2.91 -0.02 4.46 16 6 C 0.00 -0.01 4.98 84.86 0.42 0.41 16 7 N -0.89 -47.49 11.27 21.65 0.24 -47.25 16 8 Si 0.97 40.43 29.62 68.60 2.03 42.46 16 9 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 10 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 12 S 2.65 118.95 5.65 -56.49 -0.32 118.63 16 13 O -1.01 -51.74 16.48 -128.00 -2.11 -53.85 16 14 O -1.01 -46.76 15.81 -128.00 -2.02 -48.79 16 15 C -0.71 -25.39 5.97 22.23 0.13 -25.26 16 16 C 0.05 1.36 8.50 22.30 0.19 1.55 16 17 C -0.22 -4.99 9.03 22.34 0.20 -4.79 16 18 C 0.23 6.23 6.70 22.86 0.15 6.38 16 19 O -0.30 -7.30 8.57 -68.68 -0.59 -7.89 16 20 C 0.00 0.04 9.81 113.37 1.11 1.15 16 21 C -0.21 -6.49 5.89 -20.02 -0.12 -6.61 16 22 C 0.54 16.24 8.26 70.23 0.58 16.82 16 23 O -0.53 -17.48 15.95 26.81 0.43 -17.05 16 24 O -0.51 -12.66 12.68 -56.61 -0.72 -13.38 16 25 C 0.07 2.50 9.08 22.53 0.20 2.70 16 26 H 0.05 1.62 7.11 -2.39 -0.02 1.60 16 27 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.09 4.53 5.31 -2.38 -0.01 4.52 16 30 H 0.06 2.57 6.90 -2.39 -0.02 2.55 16 31 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 32 H 0.16 4.00 7.60 -2.91 -0.02 3.98 16 33 H 0.19 2.40 6.30 -2.91 -0.02 2.38 16 34 H 0.08 0.71 7.66 -2.39 -0.02 0.69 16 35 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.08 0.73 7.66 -2.39 -0.02 0.71 16 37 H 0.43 6.03 9.11 -74.05 -0.67 5.36 16 38 H 0.15 5.41 7.16 -2.91 -0.02 5.39 16 Total: -1.00 -74.17 338.98 1.29 -72.87 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.45 Total: 17.89 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.88 Total: -22.16 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -0.73 Total: -88.74 kcal Atomic # 8 Polarization: -135.94 SS G_CDS: -5.01 Total: -140.96 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Atomic # 16 Polarization: 118.95 SS G_CDS: -0.32 Total: 118.63 kcal Total: -74.17 1.29 -72.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273639991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.618 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds