Wall clock time and date at job start Tue Mar 31 2020 05:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.47116 * 2 1 4 4 C 1.36937 * 120.00160 * 276.28816 * 3 2 1 5 5 H 1.08006 * 120.00082 * 147.46511 * 4 3 2 6 6 C 1.38810 * 120.00128 * 327.46560 * 4 3 2 7 7 N 1.31613 * 120.00481 * 151.52623 * 6 4 3 8 8 Si 1.86801 * 119.99754 * 331.52806 * 6 4 3 9 9 H 1.48503 * 109.47258 * 95.38492 * 8 6 4 10 10 H 1.48504 * 109.47366 * 215.38820 * 8 6 4 11 11 H 1.48510 * 109.47166 * 335.38874 * 8 6 4 12 12 S 1.65603 * 120.00131 * 96.28482 * 3 2 1 13 13 O 1.42096 * 106.40401 * 165.78767 * 12 3 2 14 14 O 1.42096 * 106.39899 * 32.86853 * 12 3 2 15 15 C 1.76198 * 107.22049 * 279.32858 * 12 3 2 16 16 C 1.37810 * 119.84453 * 114.24899 * 15 12 3 17 17 C 1.39733 * 119.90014 * 180.02562 * 16 15 12 18 18 C 1.47405 * 120.19630 * 180.02562 * 17 16 15 19 19 O 1.21507 * 119.99784 * 179.72988 * 18 17 16 20 20 O 1.34746 * 119.99874 * 359.97438 * 18 17 16 21 21 C 1.40231 * 119.60158 * 0.28154 * 17 16 15 22 22 O 1.35646 * 120.15239 * 179.69610 * 21 17 16 23 23 C 1.38659 * 119.69703 * 359.44864 * 21 17 16 24 24 C 1.38105 * 120.08560 * 0.55049 * 23 21 17 25 25 C 1.50699 * 119.79757 * 179.74454 * 24 23 21 26 26 H 1.08994 * 109.47197 * 64.40049 * 1 2 3 27 27 H 1.09000 * 109.47043 * 184.40092 * 1 2 3 28 28 H 1.09006 * 109.47084 * 304.39920 * 1 2 3 29 29 H 1.08997 * 109.46868 * 239.99846 * 2 1 3 30 30 H 1.09005 * 109.47075 * 119.99911 * 2 1 3 31 31 H 0.97002 * 120.00238 * 179.97438 * 7 6 4 32 32 H 1.08000 * 120.05257 * 0.04799 * 16 15 12 33 33 H 0.96701 * 117.00556 * 359.73052 * 20 18 17 34 34 H 0.96702 * 113.99463 * 89.99695 * 22 21 17 35 35 H 1.08000 * 119.95924 * 180.27443 * 23 21 17 36 36 H 1.08996 * 109.47580 * 263.50813 * 25 24 23 37 37 H 1.09000 * 109.47314 * 23.50811 * 25 24 23 38 38 H 1.08997 * 109.46861 * 143.50486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1241 2.0700 -1.1788 5 1 1.9628 3.1378 -1.1966 6 6 2.4387 1.3960 -2.3507 7 7 2.0174 1.8578 -3.5089 8 14 3.4601 -0.1666 -2.2840 9 1 2.5590 -1.3470 -2.2750 10 1 4.3467 -0.2297 -3.4737 11 1 4.2867 -0.1654 -1.0502 12 16 2.4424 2.1096 1.4255 13 8 3.1720 3.2782 1.0776 14 8 2.9670 1.0852 2.2589 15 6 0.9549 2.6615 2.1919 16 6 0.5466 2.0985 3.3817 17 6 -0.6331 2.5350 3.9902 18 6 -1.0756 1.9377 5.2631 19 8 -2.0995 2.3234 5.7916 20 8 -0.3421 0.9674 5.8430 21 6 -1.3962 3.5408 3.3800 22 8 -2.5464 3.9686 3.9578 23 6 -0.9669 4.0997 2.1858 24 6 0.2011 3.6588 1.5955 25 6 0.6586 4.2667 0.2946 26 1 -0.3633 0.4440 -0.9267 27 1 -0.3633 -1.0246 0.0789 28 1 -0.3633 0.5806 0.8480 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.2376 1.3870 -4.3279 32 1 1.1377 1.3213 3.8432 33 1 0.4642 0.6934 5.3849 34 1 -2.4275 4.7065 4.5714 35 1 -1.5491 4.8777 1.7145 36 1 0.3348 3.6374 -0.5343 37 1 0.2259 5.2613 0.1863 38 1 1.7460 4.3413 0.2911 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273694439.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:34 Heat of formation + Delta-G solvation = -152.888533 kcal Electronic energy + Delta-G solvation = -27530.626932 eV Core-core repulsion = 23466.795995 eV Total energy + Delta-G solvation = -4063.830937 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.78905 -39.01687 -37.36960 -36.66177 -36.42842 -36.28056 -35.09660 -32.76350 -32.19193 -30.41165 -29.67714 -27.70194 -24.58704 -23.40738 -23.30587 -22.43276 -21.60762 -19.60863 -18.62451 -18.14508 -17.18460 -17.05035 -16.74070 -16.13565 -15.85298 -15.50372 -15.34925 -15.25317 -14.64598 -14.38163 -13.71165 -13.47521 -13.45820 -13.37454 -12.99973 -12.78397 -12.56647 -12.39331 -12.05847 -11.97384 -11.71531 -11.57932 -11.43909 -11.25771 -11.16382 -11.05638 -10.91484 -10.66883 -10.51615 -10.18334 -10.03087 -9.87247 -9.30660 -9.04705 -8.95935 -8.24286 -6.54845 -4.06188 0.39190 0.71772 1.11296 2.35556 3.03855 3.13789 3.22608 3.23130 3.29278 3.81582 3.83624 4.12999 4.14653 4.33254 4.43702 4.78768 4.84894 4.89811 5.11546 5.36607 5.45347 5.51527 5.56924 5.70671 5.87428 5.88339 5.92587 6.08451 6.17779 6.19636 6.41588 6.44901 6.69094 6.75027 6.94584 7.10408 7.37324 7.52753 7.54983 8.14176 8.94921 9.02127 10.53656 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.004864 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.758359 B = 5755.083246 C = 6166.997165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.864 5.864 4 C -0.311 4.311 5 H 0.125 0.875 6 C 0.076 3.924 7 N -0.848 5.848 8 Si 0.861 3.139 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.262 1.262 12 S 2.641 3.359 13 O -0.956 6.956 14 O -0.998 6.998 15 C -0.681 4.681 16 C 0.027 3.973 17 C -0.249 4.249 18 C 0.542 3.458 19 O -0.458 6.458 20 O -0.508 6.508 21 C 0.225 3.775 22 O -0.479 6.479 23 C -0.185 4.185 24 C 0.090 3.910 25 C -0.189 4.189 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.276 0.724 32 H 0.147 0.853 33 H 0.416 0.584 34 H 0.401 0.599 35 H 0.145 0.855 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 1.500 9.000 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 N -0.697 5.697 4 C -0.445 4.445 5 H 0.142 0.858 6 C -0.135 4.135 7 N -0.485 5.485 8 Si 0.689 3.311 9 H -0.200 1.200 10 H -0.215 1.215 11 H -0.186 1.186 12 S 2.739 3.261 13 O -0.945 6.945 14 O -0.987 6.987 15 C -0.764 4.764 16 C 0.007 3.993 17 C -0.253 4.253 18 C 0.384 3.616 19 O -0.343 6.343 20 O -0.320 6.320 21 C 0.178 3.822 22 O -0.291 6.291 23 C -0.204 4.204 24 C 0.088 3.912 25 C -0.244 4.244 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.274 0.726 34 H 0.260 0.740 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.548 1.422 9.657 10.769 hybrid contribution 0.476 -0.552 -0.128 0.740 sum -4.072 0.871 9.528 10.399 Atomic orbital electron populations 1.22128 0.96552 1.00647 1.02887 1.21434 0.94287 0.83864 1.02187 1.52971 1.76686 1.20604 1.19418 1.19063 1.47745 0.95579 0.82144 0.85838 1.25301 0.95447 0.97959 0.94775 1.69868 1.39549 1.40597 0.98440 0.87239 0.81729 0.83622 0.78539 1.19981 1.21499 1.18640 1.04660 0.73201 0.74207 0.74039 1.93422 1.68154 1.50094 1.82865 1.93415 1.76713 1.58030 1.70586 1.31182 1.26476 1.10520 1.08232 1.20929 0.92154 0.94210 0.91958 1.20709 0.99432 1.05889 0.99225 1.20007 0.82297 0.76845 0.82481 1.90866 1.21212 1.57755 1.64515 1.84548 1.40118 1.53182 1.54112 1.18594 0.82770 0.90078 0.90722 1.84703 1.26595 1.55317 1.62519 1.21502 0.97889 1.03821 0.97140 1.19840 0.89957 0.87944 0.93411 1.22200 1.06730 1.01891 0.93623 0.90981 0.92915 0.93445 0.91289 0.90971 0.91403 0.83522 0.72587 0.73966 0.83709 0.85931 0.90555 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 10.20 37.16 0.38 -2.26 16 2 C 0.11 2.03 5.46 -4.04 -0.02 2.01 16 3 N -0.86 -17.82 2.52 -59.91 -0.15 -17.97 16 4 C -0.31 -7.16 8.01 -15.06 -0.12 -7.28 16 5 H 0.12 2.87 4.80 -52.48 -0.25 2.62 16 6 C 0.08 1.84 5.25 -17.43 -0.09 1.75 16 7 N -0.85 -21.48 13.97 55.49 0.78 -20.71 16 8 Si 0.86 19.08 25.26 -169.99 -4.29 14.79 16 9 H -0.27 -5.70 6.60 56.52 0.37 -5.32 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.26 -5.92 7.11 56.52 0.40 -5.51 16 12 S 2.64 51.26 5.05 -107.50 -0.54 50.72 16 13 O -0.96 -20.75 14.38 -57.17 -0.82 -21.57 16 14 O -1.00 -19.97 15.72 -57.17 -0.90 -20.87 16 15 C -0.68 -10.85 5.49 -39.64 -0.22 -11.07 16 16 C 0.03 0.36 9.01 -39.18 -0.35 0.01 16 17 C -0.25 -3.37 5.89 -104.86 -0.62 -3.98 16 18 C 0.54 7.57 8.34 34.46 0.29 7.86 16 19 O -0.46 -7.67 16.01 -26.59 -0.43 -8.10 16 20 O -0.51 -5.88 13.48 -40.62 -0.55 -6.43 16 21 C 0.22 3.00 6.72 -38.68 -0.26 2.74 16 22 O -0.48 -5.93 11.58 -40.51 -0.47 -6.40 16 23 C -0.18 -2.42 9.59 -39.47 -0.38 -2.80 16 24 C 0.09 1.35 5.88 -104.57 -0.61 0.74 16 25 C -0.19 -2.93 7.88 36.01 0.28 -2.65 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.72 7.73 -51.93 -0.40 0.32 16 29 H 0.07 1.38 2.87 -51.93 -0.15 1.23 16 30 H 0.07 1.23 7.06 -51.93 -0.37 0.86 16 31 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 32 H 0.15 1.59 5.60 -52.49 -0.29 1.29 16 33 H 0.42 2.83 6.88 45.56 0.31 3.14 16 34 H 0.40 3.16 9.06 45.56 0.41 3.58 16 35 H 0.15 1.56 8.05 -52.49 -0.42 1.14 16 36 H 0.12 2.06 6.41 -51.93 -0.33 1.72 16 37 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 38 H 0.12 2.17 4.24 -51.93 -0.22 1.95 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -31.32 321.81 -6.39 -37.71 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -2.14 Total: 8.90 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.73 Total: -14.93 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.62 Total: -38.68 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -3.16 Total: -63.36 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.29 Total: 14.79 kcal Atomic # 16 Polarization: 51.26 SS G_CDS: -0.54 Total: 50.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.32 -6.39 -37.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273694439.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.176 kcal (2) G-P(sol) polarization free energy of solvation -31.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds