Wall clock time and date at job start Tue Mar 31 2020 05:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47350 * 2 1 4 4 C 1.36935 * 119.99766 * 275.97121 * 3 2 1 5 5 H 1.08005 * 120.00512 * 146.59922 * 4 3 2 6 6 C 1.38812 * 120.00039 * 326.58896 * 4 3 2 7 7 N 1.31624 * 119.99966 * 336.11316 * 6 4 3 8 8 Si 1.86798 * 120.00181 * 156.10920 * 6 4 3 9 9 H 1.48505 * 109.46934 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47006 * 120.00123 * 8 6 4 11 11 H 1.48505 * 109.47139 * 240.00299 * 8 6 4 12 12 S 1.65599 * 120.00150 * 95.96303 * 3 2 1 13 13 O 1.42101 * 106.40137 * 156.46543 * 12 3 2 14 14 O 1.42099 * 106.40050 * 23.54179 * 12 3 2 15 15 C 1.76200 * 107.21780 * 270.00472 * 12 3 2 16 16 C 1.38278 * 119.94180 * 270.29473 * 15 12 3 17 17 C 1.38142 * 120.05144 * 180.30212 * 16 15 12 18 18 C 1.38734 * 119.94677 * 359.42567 * 17 16 15 19 19 O 1.35899 * 120.05635 * 180.30314 * 18 17 16 20 20 C 1.42905 * 116.99861 * 180.02562 * 19 18 17 21 21 C 1.50695 * 109.46977 * 179.97438 * 20 19 18 22 22 O 1.20823 * 120.00136 * 0.02562 * 21 20 19 23 23 O 1.34236 * 120.00274 * 179.97438 * 21 20 19 24 24 C 1.38735 * 119.88583 * 0.27761 * 18 17 16 25 25 C 1.38142 * 119.94449 * 0.02562 * 24 18 17 26 26 H 1.09001 * 109.47518 * 300.00470 * 1 2 3 27 27 H 1.09000 * 109.47001 * 60.00642 * 1 2 3 28 28 H 1.09000 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47518 * 239.99530 * 2 1 3 30 30 H 1.09007 * 109.47010 * 119.99720 * 2 1 3 31 31 H 0.97000 * 120.00189 * 179.97438 * 7 6 4 32 32 H 1.07995 * 119.97022 * 0.03066 * 16 15 12 33 33 H 1.08001 * 120.02852 * 179.70483 * 17 16 15 34 34 H 1.08998 * 109.47216 * 299.99403 * 20 19 18 35 35 H 1.09007 * 109.47293 * 59.99745 * 20 19 18 36 36 H 0.96693 * 116.99971 * 180.02562 * 23 21 20 37 37 H 1.08004 * 120.02761 * 180.02562 * 24 18 17 38 38 H 1.08001 * 119.96823 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1303 2.0678 -1.1795 5 1 1.9554 3.1333 -1.2029 6 6 2.4688 1.3944 -2.3452 7 7 3.1248 0.2551 -2.2802 8 14 1.9933 2.1049 -4.0060 9 1 1.2678 3.3853 -3.8072 10 1 3.2184 2.3501 -4.8086 11 1 1.1161 1.1444 -4.7225 12 16 2.4349 2.1122 1.4263 13 8 3.3458 3.1509 1.0939 14 8 2.7468 1.0668 2.3369 15 6 0.9879 2.9003 2.0505 16 6 0.7050 4.2062 1.6942 17 6 -0.4255 4.8283 2.1872 18 6 -1.2837 4.1381 3.0309 19 8 -2.3998 4.7460 3.5122 20 6 -3.2372 3.9749 4.3761 21 6 -4.4166 4.8080 4.8074 22 8 -4.5288 5.9451 4.4149 23 8 -5.3430 4.2863 5.6268 24 6 -1.0009 2.8260 3.3819 25 6 0.1342 2.2104 2.8912 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.3610 -0.2157 -3.0947 32 1 1.3708 4.7414 1.0335 33 1 -0.6436 5.8498 1.9125 34 1 -3.5910 3.0911 3.8452 35 1 -2.6689 3.6681 5.2542 36 1 -6.0814 4.8589 5.8755 37 1 -1.6676 2.2864 4.0382 38 1 0.3546 1.1889 3.1639 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273738366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:45 Heat of formation + Delta-G solvation = -183.726373 kcal Electronic energy + Delta-G solvation = -26092.880937 eV Core-core repulsion = 22027.712771 eV Total energy + Delta-G solvation = -4065.168166 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.76474 -40.85428 -38.60358 -38.00071 -37.64638 -37.16194 -36.54551 -33.52037 -32.38293 -31.64333 -30.89720 -29.81950 -26.46244 -24.40111 -24.08180 -23.27456 -22.45722 -20.32778 -19.84159 -19.26537 -18.75253 -18.28098 -18.03120 -17.98516 -17.78198 -16.81109 -16.47843 -16.13492 -16.06319 -15.66441 -15.21663 -14.85754 -14.61667 -14.44642 -14.29746 -14.05244 -13.90895 -13.65223 -13.60752 -13.09265 -12.90500 -12.79565 -12.71660 -12.64527 -12.55339 -12.40996 -12.17885 -12.06109 -11.92108 -11.76662 -11.66984 -11.47587 -10.89996 -10.16387 -9.73545 -9.53370 -8.14023 -5.88149 -0.30257 -0.06455 0.21900 1.02971 1.17184 1.48896 1.52681 1.64562 2.26721 2.47141 2.53650 2.78288 2.96405 3.25473 3.50492 3.64035 3.85035 3.96876 3.98853 4.12779 4.22093 4.35421 4.45142 4.50351 4.77701 4.78572 4.82813 4.88910 5.01809 5.03933 5.16196 5.33986 5.44914 5.53158 5.54517 5.67922 6.00936 6.09489 6.55378 6.86524 7.12569 7.49544 8.87617 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.017407 B = 0.003354 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.175658 B = 8346.585373 C = 8768.050691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.102 3.898 3 N -0.854 5.854 4 C -0.306 4.306 5 H 0.090 0.910 6 C -0.003 4.003 7 N -0.892 5.892 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.645 3.355 13 O -1.011 7.011 14 O -1.017 7.017 15 C -0.696 4.696 16 C 0.007 3.993 17 C -0.172 4.172 18 C 0.178 3.822 19 O -0.309 6.309 20 C 0.051 3.949 21 C 0.492 3.508 22 O -0.542 6.542 23 O -0.498 6.498 24 C -0.216 4.216 25 C 0.010 3.990 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.268 0.732 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.438 0.562 37 H 0.183 0.817 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 2.861 12.872 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.686 5.686 4 C -0.440 4.440 5 H 0.107 0.893 6 C -0.207 4.207 7 N -0.532 5.532 8 Si 0.796 3.204 9 H -0.184 1.184 10 H -0.212 1.212 11 H -0.199 1.199 12 S 2.747 3.253 13 O -1.001 7.001 14 O -1.007 7.007 15 C -0.786 4.786 16 C -0.012 4.012 17 C -0.191 4.191 18 C 0.132 3.868 19 O -0.222 6.222 20 C -0.024 4.024 21 C 0.335 3.665 22 O -0.432 6.432 23 O -0.313 6.313 24 C -0.235 4.235 25 C -0.010 4.010 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.301 0.699 37 H 0.200 0.800 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.398 3.001 13.034 21.160 hybrid contribution -0.760 0.756 -0.748 1.307 sum -17.158 3.756 12.285 21.434 Atomic orbital electron populations 1.22086 0.95683 1.01832 1.01566 1.21424 0.94212 0.83249 1.03567 1.52680 1.77198 1.21174 1.17536 1.19287 1.45633 0.94100 0.84970 0.89283 1.26042 0.94954 0.97233 1.02499 1.70082 1.35300 1.18267 1.29582 0.85207 0.77992 0.78942 0.78239 1.18354 1.21248 1.19913 1.03524 0.74745 0.73210 0.73850 1.93387 1.62380 1.60152 1.84231 1.93375 1.84063 1.56876 1.66366 1.30678 1.24379 1.07327 1.16225 1.20791 0.94823 0.91903 0.93688 1.20648 0.94928 1.02220 1.01353 1.19133 0.84920 0.91462 0.91305 1.86061 1.32918 1.41351 1.61837 1.22340 0.89098 0.93478 0.97438 1.22785 0.83363 0.85204 0.75165 1.90794 1.76593 1.21375 1.54436 1.84399 1.36285 1.50083 1.60549 1.21648 1.00766 0.94339 1.06717 1.20923 0.90883 0.99502 0.89665 0.92697 0.93344 0.90720 0.88987 0.92335 0.92246 0.84312 0.82957 0.84076 0.84024 0.69886 0.80012 0.83132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 10.20 71.98 0.73 -4.59 16 2 C 0.10 4.52 6.01 86.38 0.52 5.04 16 3 N -0.85 -41.43 2.85 -343.44 -0.98 -42.41 16 4 C -0.31 -15.87 8.87 84.03 0.75 -15.12 16 5 H 0.09 4.53 7.94 -2.91 -0.02 4.50 16 6 C 0.00 -0.18 4.98 84.86 0.42 0.24 16 7 N -0.89 -48.34 11.27 21.65 0.24 -48.10 16 8 Si 0.97 40.87 29.62 68.60 2.03 42.90 16 9 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 10 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 S 2.64 121.72 5.65 -56.49 -0.32 121.40 16 13 O -1.01 -53.12 16.50 -128.00 -2.11 -55.23 16 14 O -1.02 -48.71 15.82 -128.00 -2.03 -50.73 16 15 C -0.70 -25.01 5.97 22.28 0.13 -24.87 16 16 C 0.01 0.24 9.52 22.26 0.21 0.46 16 17 C -0.17 -4.75 9.99 22.37 0.22 -4.52 16 18 C 0.18 4.20 6.69 22.51 0.15 4.35 16 19 O -0.31 -6.50 9.67 -73.33 -0.71 -7.21 16 20 C 0.05 0.59 5.33 71.23 0.38 0.97 16 21 C 0.49 7.01 8.40 71.23 0.60 7.60 16 22 O -0.54 -13.04 17.26 28.40 0.49 -12.55 16 23 O -0.50 -3.51 13.42 -51.47 -0.69 -4.20 16 24 C -0.22 -4.50 9.04 22.37 0.20 -4.30 16 25 C 0.01 0.27 8.52 22.25 0.19 0.46 16 26 H 0.05 1.69 7.11 -2.39 -0.02 1.67 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.09 4.57 5.31 -2.39 -0.01 4.55 16 30 H 0.06 2.53 6.90 -2.38 -0.02 2.51 16 31 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 32 H 0.14 4.75 7.62 -2.91 -0.02 4.73 16 33 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 34 H 0.14 0.83 7.66 -2.39 -0.02 0.81 16 35 H 0.14 0.78 7.66 -2.38 -0.02 0.76 16 36 H 0.44 -0.29 9.10 -74.06 -0.67 -0.97 16 37 H 0.18 1.93 6.30 -2.91 -0.02 1.91 16 38 H 0.15 3.96 7.61 -2.91 -0.02 3.93 16 Total: -1.00 -78.05 342.77 0.89 -77.16 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.45 Total: 13.26 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 4.51 Total: -34.29 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -0.73 Total: -90.51 kcal Atomic # 8 Polarization: -124.88 SS G_CDS: -5.05 Total: -129.92 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 121.72 SS G_CDS: -0.32 Total: 121.40 kcal Total: -78.05 0.89 -77.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273738366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.566 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds