Wall clock time and date at job start Tue Mar 31 2020 05:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 119.99447 * 2 1 4 4 H 1.48499 * 109.47176 * 270.00031 * 3 2 1 5 5 H 1.48504 * 109.47386 * 30.00233 * 3 2 1 6 6 H 1.48504 * 109.46946 * 150.00052 * 3 2 1 7 7 C 1.37870 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99717 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99993 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47353 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47445 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.53977 * 291.62365 * 11 10 9 13 13 O 1.42102 * 110.53976 * 68.37356 * 11 10 9 14 14 N 1.65593 * 104.45079 * 179.97438 * 11 10 9 15 15 C 1.46499 * 119.99833 * 64.99683 * 14 11 10 16 16 H 1.08990 * 109.47673 * 335.00151 * 15 14 11 17 17 C 1.50707 * 109.46949 * 95.00377 * 15 14 11 18 18 O 1.20819 * 119.99672 * 0.02562 * 17 15 14 19 19 O 1.34224 * 119.99911 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.47273 * 214.99844 * 15 14 11 21 21 C 1.38268 * 119.94675 * 319.73118 * 20 15 14 22 22 C 1.38144 * 120.05746 * 179.72160 * 21 20 15 23 23 C 1.38734 * 119.94380 * 0.52705 * 22 21 20 24 24 O 1.35898 * 120.05521 * 179.72502 * 23 22 21 25 25 C 1.38735 * 119.88613 * 359.74712 * 23 22 21 26 26 C 1.38147 * 119.94429 * 359.97438 * 25 23 22 27 27 H 0.96999 * 120.00929 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47328 * 60.00039 * 9 7 2 29 29 H 1.09004 * 109.47043 * 299.99849 * 9 7 2 30 30 H 1.09001 * 109.46962 * 59.99704 * 10 9 7 31 31 H 1.09004 * 109.46832 * 299.99868 * 10 9 7 32 32 H 0.97001 * 120.00285 * 245.00211 * 14 11 10 33 33 H 0.96701 * 116.99821 * 179.97438 * 19 17 15 34 34 H 1.08000 * 119.97006 * 359.97438 * 21 20 15 35 35 H 1.07997 * 120.02792 * 180.29923 * 22 21 20 36 36 H 0.96698 * 114.00203 * 270.01973 * 24 23 22 37 37 H 1.08000 * 120.02462 * 179.97438 * 25 23 22 38 38 H 1.08005 * 119.96854 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1938 0.0000 10 6 4.0217 -2.6363 -0.0014 11 16 5.8357 -2.6362 -0.0014 12 8 6.3342 -2.1446 -1.2380 13 8 6.3343 -2.1470 1.2360 14 7 6.2490 -4.2397 -0.0023 15 6 5.9125 -5.0823 -1.1525 16 1 5.0561 -4.6575 -1.6760 17 6 7.0915 -5.1481 -2.0890 18 8 8.1085 -4.5527 -1.8226 19 8 7.0120 -5.8689 -3.2185 20 6 5.5718 -6.4706 -0.6757 21 6 6.3090 -7.0522 0.3392 22 6 5.9949 -8.3225 0.7820 23 6 4.9458 -9.0192 0.1999 24 8 4.6385 -10.2711 0.6299 25 6 4.2113 -8.4356 -0.8222 26 6 4.5257 -7.1628 -1.2574 27 1 -0.4851 0.8400 -0.0004 28 1 3.8745 -0.6806 0.8905 29 1 3.8752 -0.6794 -0.8895 30 1 3.6587 -3.1492 -0.8921 31 1 3.6581 -3.1512 0.8880 32 1 6.7139 -4.6212 0.7588 33 1 7.7937 -5.8806 -3.7877 34 1 7.1284 -6.5113 0.7890 35 1 6.5680 -8.7744 1.5781 36 1 5.1064 -10.9745 0.1595 37 1 3.3944 -8.9761 -1.2772 38 1 3.9539 -6.7080 -2.0528 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275191608.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:43 Heat of formation + Delta-G solvation = -175.418242 kcal Electronic energy + Delta-G solvation = -25982.584655 eV Core-core repulsion = 21917.776756 eV Total energy + Delta-G solvation = -4064.807899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85389 -39.81430 -37.57418 -36.80769 -36.34542 -35.64986 -35.02895 -34.00802 -31.54644 -31.43815 -30.48690 -27.08066 -26.05039 -23.29320 -22.88998 -21.41113 -21.36466 -19.25618 -18.77751 -18.32440 -17.96021 -17.42004 -16.99336 -16.64808 -16.07295 -15.77985 -15.59428 -15.49099 -15.04818 -14.78634 -14.33099 -13.92293 -13.81911 -13.73884 -13.30547 -12.84211 -12.66631 -12.50106 -12.23336 -11.94631 -11.79562 -11.76348 -11.71265 -11.57344 -11.29000 -11.24875 -11.12295 -10.82898 -10.49396 -10.23895 -10.04141 -9.61464 -9.36095 -9.33670 -8.93374 -8.68765 -6.19045 -4.20850 0.47140 0.73335 0.98436 2.02756 2.55696 2.89802 3.25173 3.32807 3.34221 3.36981 3.79992 3.99247 4.12773 4.30117 4.33776 4.51329 4.59458 4.65215 4.90321 4.99955 5.07948 5.12548 5.29582 5.39458 5.41727 5.55135 5.62743 5.84803 6.04181 6.10316 6.20263 6.30867 6.38265 6.70287 6.76159 6.89115 7.26627 7.50975 7.72029 8.33142 8.81663 9.40386 10.93138 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.013595 B = 0.003707 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.058474 B = 7550.793093 C = 8633.996070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.582 4.582 11 S 2.582 3.418 12 O -0.954 6.954 13 O -0.956 6.956 14 N -1.101 6.101 15 C 0.214 3.786 16 H 0.134 0.866 17 C 0.467 3.533 18 O -0.487 6.487 19 O -0.512 6.512 20 C -0.104 4.104 21 C -0.087 4.087 22 C -0.143 4.143 23 C 0.113 3.887 24 O -0.499 6.499 25 C -0.141 4.141 26 C -0.072 4.072 27 H 0.267 0.733 28 H 0.034 0.966 29 H 0.029 0.971 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.419 0.581 33 H 0.411 0.589 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.391 0.609 37 H 0.135 0.865 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -20.641 -3.746 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.715 4.715 11 S 2.680 3.320 12 O -0.944 6.944 13 O -0.946 6.946 14 N -0.857 5.857 15 C 0.103 3.897 16 H 0.152 0.848 17 C 0.305 3.695 18 O -0.372 6.372 19 O -0.324 6.324 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.161 4.161 23 C 0.069 3.931 24 O -0.309 6.309 25 C -0.159 4.159 26 C -0.091 4.091 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.143 0.857 31 H 0.150 0.850 32 H 0.255 0.745 33 H 0.270 0.730 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.248 0.752 37 H 0.153 0.847 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.444 -19.243 -3.174 23.135 hybrid contribution 0.784 0.072 -0.353 0.863 sum 13.228 -19.171 -3.527 23.558 Atomic orbital electron populations 1.69873 1.06199 1.27311 1.49827 1.24971 0.94811 0.99147 0.94081 0.86943 0.80731 0.83731 0.79159 1.19644 1.20718 1.18602 1.20820 0.87655 0.94966 1.52485 0.90302 1.19428 1.00007 0.87170 0.98036 1.30334 1.20447 1.09575 1.11177 1.06038 0.79259 0.72070 0.74640 1.93589 1.78213 1.77221 1.45344 1.93579 1.79181 1.76890 1.44953 1.55890 1.74527 1.30160 1.25136 1.18841 0.94065 0.91073 0.85734 0.84846 1.23734 0.89741 0.75372 0.80630 1.90747 1.31471 1.41203 1.73824 1.84500 1.47390 1.66961 1.33533 1.19463 0.98248 0.94068 0.98770 1.20844 0.99066 0.94700 0.95892 1.21376 0.97668 0.95638 1.01442 1.18562 0.94142 0.86467 0.93928 1.84836 1.69421 1.13711 1.62967 1.21435 1.01075 0.96376 0.97058 1.20951 0.95502 0.93857 0.98790 0.92332 0.94798 0.95261 0.85696 0.84999 0.74512 0.73045 0.85291 0.84984 0.75239 0.84727 0.84354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.52 -14.17 9.66 -34.44 -0.33 -14.51 16 8 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 10 C -0.58 -10.10 5.90 37.16 0.22 -9.88 16 11 S 2.58 43.50 5.38 -107.50 -0.58 42.93 16 12 O -0.95 -18.79 17.78 -57.54 -1.02 -19.82 16 13 O -0.96 -18.75 18.08 -57.54 -1.04 -19.79 16 14 N -1.10 -13.86 4.80 -6.88 -0.03 -13.89 16 15 C 0.21 2.36 2.78 -70.23 -0.20 2.17 16 16 H 0.13 1.25 7.01 -51.93 -0.36 0.88 16 17 C 0.47 5.69 7.63 36.01 0.27 5.96 16 18 O -0.49 -7.62 17.19 -18.74 -0.32 -7.94 16 19 O -0.51 -4.52 13.34 -39.24 -0.52 -5.04 16 20 C -0.10 -0.98 4.88 -104.60 -0.51 -1.49 16 21 C -0.09 -0.77 9.14 -39.60 -0.36 -1.13 16 22 C -0.14 -1.18 9.99 -39.43 -0.39 -1.58 16 23 C 0.11 0.96 6.71 -39.21 -0.26 0.70 16 24 O -0.50 -3.73 13.50 -19.42 -0.26 -3.99 16 25 C -0.14 -1.15 9.99 -39.43 -0.39 -1.54 16 26 C -0.07 -0.61 9.66 -39.61 -0.38 -0.99 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 29 H 0.03 0.66 7.57 -51.93 -0.39 0.27 16 30 H 0.12 1.85 7.44 -51.92 -0.39 1.46 16 31 H 0.13 2.07 8.14 -51.92 -0.42 1.65 16 32 H 0.42 4.45 7.05 -34.47 -0.24 4.21 16 33 H 0.41 1.99 9.10 45.56 0.41 2.40 16 34 H 0.13 1.01 6.83 -52.49 -0.36 0.65 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.39 0.96 9.06 45.56 0.41 1.37 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.14 0.93 8.03 -52.48 -0.42 0.51 16 LS Contribution 347.96 15.07 5.24 5.24 Total: -1.00 -39.25 347.96 -7.55 -46.80 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -2.57 Total: 5.41 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.55 Total: -20.60 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.74 Total: -39.76 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -3.17 Total: -56.59 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Atomic # 16 Polarization: 43.50 SS G_CDS: -0.58 Total: 42.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -39.25 -7.55 -46.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275191608.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.613 kcal (2) G-P(sol) polarization free energy of solvation -39.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds