Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.46760 * 2 1 4 4 N 1.30837 * 126.06205 * 90.02606 * 3 2 1 5 5 N 1.28441 * 110.96701 * 179.97438 * 4 3 2 6 6 H 0.96994 * 125.18825 * 180.02562 * 5 4 3 7 7 C 1.36708 * 109.62330 * 359.97438 * 5 4 3 8 8 C 1.47066 * 126.89924 * 179.97438 * 7 5 4 9 9 O 1.21642 * 119.99935 * 180.02562 * 8 7 5 10 10 N 1.34773 * 120.00059 * 0.03023 * 8 7 5 11 11 C 1.46504 * 120.00316 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.46411 * 35.00023 * 11 10 8 13 13 C 1.50695 * 109.47292 * 154.99617 * 11 10 8 14 14 H 1.08004 * 120.00025 * 0.02562 * 13 11 10 15 15 C 1.37880 * 120.00044 * 180.02562 * 13 11 10 16 16 N 1.31511 * 120.00046 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00012 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47045 * 60.00218 * 17 15 13 19 19 H 1.48500 * 109.47106 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47476 * 300.00224 * 17 15 13 21 21 C 1.52999 * 109.46822 * 275.00099 * 11 10 8 22 22 C 1.52997 * 109.47317 * 64.99847 * 21 11 10 23 23 C 1.38509 * 106.20238 * 0.24428 * 7 5 4 24 24 Br 1.89094 * 127.33712 * 179.75538 * 23 7 5 25 25 H 1.09002 * 109.47618 * 299.99949 * 1 2 3 26 26 H 1.09003 * 109.47101 * 60.00671 * 1 2 3 27 27 H 1.09010 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47462 * 239.99522 * 2 1 3 29 29 H 1.09003 * 109.47101 * 119.99328 * 2 1 3 30 30 H 0.97003 * 119.99708 * 359.97438 * 10 8 7 31 31 H 0.96998 * 120.00524 * 180.02562 * 16 15 13 32 32 H 1.08996 * 109.46929 * 304.98951 * 21 11 10 33 33 H 1.09002 * 109.46716 * 184.99756 * 21 11 10 34 34 H 1.09002 * 109.47153 * 299.99641 * 22 21 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 22 21 11 36 36 H 1.09004 * 109.47261 * 59.99813 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2893 2.1469 1.0577 5 7 2.7030 3.3160 0.7232 6 1 2.9523 4.0192 1.3430 7 6 2.7393 3.4176 -0.6396 8 6 3.1532 4.5887 -1.4270 9 8 3.1363 4.5413 -2.6424 10 7 3.5514 5.7144 -0.8020 11 6 3.9643 6.8809 -1.5864 12 1 3.3608 6.9418 -2.4920 13 6 3.7694 8.1311 -0.7679 14 1 3.3776 8.0636 0.2363 15 6 4.0913 9.3613 -1.3010 16 7 4.5679 9.4436 -2.5240 17 14 3.8504 10.9110 -0.2862 18 1 4.6735 10.8280 0.9471 19 1 4.2677 12.0934 -1.0817 20 1 2.4181 11.0436 0.0827 21 6 5.4403 6.7441 -1.9652 22 6 5.6182 5.5451 -2.8987 23 6 2.3020 2.1982 -1.1299 24 35 2.1134 1.6917 -2.9420 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 3.5645 5.7523 0.1672 31 1 4.7948 10.3089 -2.8989 32 1 6.0344 6.5943 -1.0638 33 1 5.7709 7.6510 -2.4716 34 1 5.2876 4.6382 -2.3924 35 1 6.6697 5.4480 -3.1690 36 1 5.0241 5.6951 -3.8002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279837146.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = 23.575080 kcal Electronic energy + Delta-G solvation = -20365.747304 eV Core-core repulsion = 17125.389762 eV Total energy + Delta-G solvation = -3240.357542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.63216 -38.95273 -35.24655 -34.65516 -32.57494 -31.97694 -31.22317 -30.01345 -29.27820 -27.08288 -24.27550 -23.71597 -22.54569 -20.54564 -20.15131 -19.45838 -18.81026 -16.67005 -15.92902 -15.52434 -15.48154 -14.59872 -14.47025 -14.26576 -13.93069 -13.53873 -13.28233 -12.76091 -12.55002 -12.17043 -11.68634 -11.62302 -11.55388 -11.33082 -11.13710 -11.08908 -10.91456 -10.87354 -10.42414 -10.28784 -9.98890 -9.70415 -9.24803 -9.24668 -9.15559 -8.71912 -8.59953 -8.02605 -6.21288 -4.31950 1.23430 1.73908 2.31368 2.85679 3.19502 3.25647 3.25932 3.63212 3.68371 4.26935 4.44359 4.75892 4.87684 5.10364 5.22793 5.25940 5.36439 5.47216 5.77065 5.93416 6.04588 6.18330 6.32556 6.38568 6.57474 6.78454 6.95612 7.10566 7.17297 7.28515 7.49726 7.58427 7.76874 7.82568 8.06367 8.41091 8.61415 8.84303 9.35156 10.83872 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.003893 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.637566 B = 7190.870065 C = 7962.624907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.059 3.941 4 N -0.271 5.271 5 N -0.372 5.372 6 H 0.450 0.550 7 C 0.019 3.981 8 C 0.565 3.435 9 O -0.502 6.502 10 N -0.700 5.700 11 C 0.273 3.727 12 H 0.055 0.945 13 C -0.540 4.540 14 H 0.060 0.940 15 C 0.069 3.931 16 N -0.879 5.879 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 C -0.128 4.128 22 C -0.139 4.139 23 C -0.149 4.149 24 Br 0.013 6.987 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.382 0.618 31 H 0.267 0.733 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.037 0.963 35 H 0.024 0.976 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 -16.797 4.294 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.101 4.101 4 N -0.103 5.103 5 N -0.088 5.088 6 H 0.296 0.704 7 C -0.114 4.114 8 C 0.346 3.654 9 O -0.376 6.376 10 N -0.348 5.348 11 C 0.172 3.828 12 H 0.072 0.928 13 C -0.578 4.578 14 H 0.078 0.922 15 C -0.135 4.135 16 N -0.516 5.516 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.202 1.202 21 C -0.167 4.167 22 C -0.196 4.196 23 C -0.240 4.240 24 Br 0.097 6.903 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.214 0.786 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.705 -16.829 3.714 17.865 hybrid contribution 0.183 1.541 1.004 1.848 sum -4.522 -15.288 4.717 16.626 Atomic orbital electron populations 1.21720 0.94130 1.01982 1.02561 1.19931 0.96318 0.88070 1.03667 1.21901 1.03219 0.97941 0.87074 1.73110 1.17324 0.93076 1.26784 1.43560 1.47896 1.11801 1.05498 0.70400 1.22178 1.06933 0.97949 0.84313 1.16904 0.79579 0.81493 0.87384 1.90891 1.53265 1.81728 1.11719 1.46491 1.64724 1.13857 1.09773 1.18893 0.92110 0.79827 0.91999 0.92753 1.21134 1.45121 0.90685 1.00876 0.92176 1.24864 0.94486 0.99053 0.95049 1.69869 1.42199 1.25370 1.14161 0.86504 0.78655 0.81990 0.79938 1.20147 1.21027 1.20156 1.21951 0.98282 0.98897 0.97533 1.21853 0.98369 0.98840 1.00565 1.22217 1.12800 0.95472 0.93538 1.96642 1.96702 1.90602 1.06404 0.92477 0.92168 0.91887 0.89630 0.90039 0.78627 0.92340 0.95008 0.88043 0.94373 0.95663 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.89 37.15 0.37 -0.94 16 2 C -0.04 -0.41 6.38 -27.88 -0.18 -0.59 16 3 C 0.06 0.80 6.48 -82.44 -0.53 0.27 16 4 N -0.27 -3.68 12.14 33.65 0.41 -3.27 16 5 N -0.37 -4.91 6.85 33.49 0.23 -4.69 16 6 H 0.45 4.56 8.22 -190.46 -1.57 2.99 16 7 C 0.02 0.31 7.16 -82.01 -0.59 -0.27 16 8 C 0.56 10.83 6.37 -12.68 -0.08 10.75 16 9 O -0.50 -11.05 12.69 5.24 0.07 -10.98 16 10 N -0.70 -13.50 5.02 -56.13 -0.28 -13.78 16 11 C 0.27 6.47 2.24 -69.08 -0.15 6.32 16 12 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.54 -13.53 8.73 -34.44 -0.30 -13.83 16 14 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 15 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 16 N -0.88 -23.75 11.30 55.43 0.63 -23.12 16 17 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 21 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 22 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 23 C -0.15 -2.31 6.73 -38.91 -0.26 -2.57 16 24 Br 0.01 0.19 32.39 -68.01 -2.20 -2.01 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 28 H 0.09 0.79 8.02 -51.93 -0.42 0.38 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.38 6.16 7.72 -40.82 -0.32 5.84 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 2.62 5.96 -51.93 -0.31 2.31 16 34 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -29.05 320.35 -8.78 -37.83 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.78 Total: 5.28 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.65 Total: -4.97 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.98 Total: -44.86 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -2.20 Total: -2.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.05 -8.78 -37.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279837146.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.405 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds