Wall clock time and date at job start Tue Mar 31 2020 05:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47173 * 2 1 4 4 N 1.30837 * 126.06634 * 90.02338 * 3 2 1 5 5 N 1.28439 * 110.96680 * 180.02562 * 4 3 2 6 6 H 0.97003 * 125.18461 * 179.97438 * 5 4 3 7 7 C 1.36705 * 109.62723 * 359.97438 * 5 4 3 8 8 C 1.47064 * 126.89978 * 179.97438 * 7 5 4 9 9 O 1.21637 * 119.99859 * 180.02562 * 8 7 5 10 10 N 1.34777 * 120.00029 * 0.02960 * 8 7 5 11 11 C 1.46501 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47030 * 324.99761 * 11 10 8 13 13 C 1.50700 * 109.47229 * 205.00369 * 11 10 8 14 14 H 1.07998 * 119.99966 * 359.97438 * 13 11 10 15 15 C 1.37878 * 120.00064 * 180.02562 * 13 11 10 16 16 N 1.31507 * 119.99923 * 180.02562 * 15 13 11 17 17 Si 1.86797 * 119.99701 * 359.97438 * 15 13 11 18 18 H 1.48506 * 109.46840 * 90.00760 * 17 15 13 19 19 H 1.48504 * 109.46912 * 209.99808 * 17 15 13 20 20 H 1.48497 * 109.47580 * 330.00471 * 17 15 13 21 21 C 1.52999 * 109.47135 * 84.99801 * 11 10 8 22 22 C 1.52997 * 109.47317 * 295.00335 * 21 11 10 23 23 C 1.38516 * 106.19907 * 0.24671 * 7 5 4 24 24 Br 1.89101 * 127.33050 * 179.75548 * 23 7 5 25 25 H 1.08994 * 109.47301 * 60.00366 * 1 2 3 26 26 H 1.08998 * 109.47388 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47320 * 300.00389 * 1 2 3 28 28 H 1.09002 * 109.47320 * 239.99611 * 2 1 3 29 29 H 1.09007 * 109.47139 * 119.99370 * 2 1 3 30 30 H 0.96998 * 119.99765 * 0.02562 * 10 8 7 31 31 H 0.97005 * 119.99936 * 179.97438 * 16 15 13 32 32 H 1.08996 * 109.46929 * 174.99439 * 21 11 10 33 33 H 1.09002 * 109.46716 * 55.00244 * 21 11 10 34 34 H 1.09002 * 109.47153 * 299.99641 * 22 21 11 35 35 H 1.09001 * 109.46832 * 179.97438 * 22 21 11 36 36 H 1.09004 * 109.47261 * 59.99813 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2895 2.1469 1.0576 5 7 2.7022 3.3162 0.7230 6 1 2.9508 4.0198 1.3429 7 6 2.7378 3.4181 -0.6398 8 6 3.1506 4.5896 -1.4272 9 8 3.1332 4.5423 -2.6425 10 7 3.5483 5.7155 -0.8022 11 6 3.9601 6.8823 -1.5866 12 1 4.4679 6.5505 -2.4923 13 6 4.8974 7.7325 -0.7681 14 1 5.1597 7.4338 0.2360 15 6 5.4191 8.8922 -1.3009 16 7 6.2374 9.6338 -0.5869 17 14 4.9647 9.4092 -3.0375 18 1 3.7531 10.2670 -2.9975 19 1 6.0900 10.1698 -3.6379 20 1 4.6897 8.2020 -3.8574 21 6 2.7260 7.7034 -1.9655 22 6 1.8340 6.8825 -2.8989 23 6 2.3011 2.1984 -1.1300 24 35 2.1120 1.6922 -2.9421 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.5626 5.7530 0.1670 31 1 6.6047 10.4496 -0.9619 32 1 3.0386 8.6167 -2.4718 33 1 2.1696 7.9601 -1.0640 34 1 2.3904 6.6258 -3.8004 35 1 0.9546 7.4673 -3.1685 36 1 1.5214 5.9692 -2.3925 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279837157.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:49 Heat of formation + Delta-G solvation = 31.834983 kcal Electronic energy + Delta-G solvation = -20459.494688 eV Core-core repulsion = 17219.495323 eV Total energy + Delta-G solvation = -3239.999365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 329.048 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.70931 -39.18862 -35.52667 -34.71762 -32.59622 -32.09741 -31.71747 -30.15422 -29.36943 -27.59893 -24.33043 -23.66666 -22.54336 -20.69522 -20.44129 -19.68842 -18.94688 -16.83375 -16.08673 -15.95341 -15.50630 -14.89106 -14.58457 -14.27305 -13.96127 -13.61232 -13.45893 -13.10832 -12.65012 -12.43695 -12.05501 -11.89753 -11.72344 -11.59890 -11.25169 -11.16258 -11.01811 -10.92484 -10.71804 -10.11171 -10.01937 -9.64125 -9.37997 -9.31579 -9.31005 -8.87694 -8.79184 -8.27538 -6.30350 -4.34422 1.13258 1.65603 2.25201 2.78603 3.17447 3.30313 3.34079 3.46119 3.51042 4.23507 4.37609 4.68854 4.76547 5.03300 5.18211 5.20858 5.27580 5.37834 5.73391 5.87471 5.88934 5.94544 5.98755 6.08384 6.13192 6.54071 6.60309 6.70893 6.73730 6.86300 7.05191 7.16073 7.35839 7.73311 7.95339 8.30916 8.54737 8.68442 9.29061 10.81406 Molecular weight = 329.05amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.004131 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.243626 B = 6775.805741 C = 7510.584226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.060 3.940 4 N -0.267 5.267 5 N -0.370 5.370 6 H 0.451 0.549 7 C 0.016 3.984 8 C 0.568 3.432 9 O -0.504 6.504 10 N -0.693 5.693 11 C 0.245 3.755 12 H 0.055 0.945 13 C -0.540 4.540 14 H 0.080 0.920 15 C 0.081 3.919 16 N -0.889 5.889 17 Si 0.883 3.117 18 H -0.275 1.275 19 H -0.293 1.293 20 H -0.259 1.259 21 C -0.140 4.140 22 C -0.145 4.145 23 C -0.146 4.146 24 Br 0.013 6.987 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.389 0.611 31 H 0.269 0.731 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.033 0.967 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -17.365 0.292 20.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.101 4.101 4 N -0.100 5.100 5 N -0.086 5.086 6 H 0.298 0.702 7 C -0.117 4.117 8 C 0.350 3.650 9 O -0.378 6.378 10 N -0.342 5.342 11 C 0.142 3.858 12 H 0.072 0.928 13 C -0.578 4.578 14 H 0.098 0.902 15 C -0.123 4.123 16 N -0.525 5.525 17 Si 0.712 3.288 18 H -0.201 1.201 19 H -0.220 1.220 20 H -0.183 1.183 21 C -0.178 4.178 22 C -0.203 4.203 23 C -0.238 4.238 24 Br 0.097 6.903 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.222 0.778 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.620 -17.383 -0.117 20.371 hybrid contribution 0.092 1.180 -0.335 1.230 sum -10.529 -16.204 -0.451 19.329 Atomic orbital electron populations 1.21718 0.94109 1.02031 1.02527 1.19941 0.96321 0.88023 1.03755 1.21914 1.03190 0.97979 0.87017 1.73133 1.17087 0.92987 1.26744 1.43583 1.47730 1.11825 1.05436 0.70247 1.22010 1.07421 0.97814 0.84406 1.16898 0.79369 0.81364 0.87343 1.90885 1.53170 1.81997 1.11772 1.46126 1.64756 1.13284 1.09987 1.19249 0.91837 0.81750 0.92957 0.92757 1.20985 1.27401 1.07052 1.02376 0.90223 1.24815 0.94137 0.95713 0.97665 1.69855 1.30755 1.14652 1.37273 0.86909 0.77288 0.79590 0.85037 1.20140 1.22035 1.18301 1.22300 0.97972 0.98760 0.98756 1.21890 0.98621 0.99432 1.00338 1.22222 1.12616 0.95364 0.93565 1.96648 1.96674 1.90655 1.06337 0.92210 0.91848 0.92458 0.89600 0.89951 0.77837 0.92133 0.92496 0.92260 0.92603 0.94772 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.04 -0.40 6.38 -27.88 -0.18 -0.57 16 3 C 0.06 0.77 6.48 -82.44 -0.53 0.23 16 4 N -0.27 -3.50 12.14 33.65 0.41 -3.09 16 5 N -0.37 -4.68 6.85 33.50 0.23 -4.45 16 6 H 0.45 4.39 8.22 -190.46 -1.57 2.82 16 7 C 0.02 0.25 7.16 -82.01 -0.59 -0.33 16 8 C 0.57 10.25 6.37 -12.68 -0.08 10.17 16 9 O -0.50 -10.36 12.68 5.24 0.07 -10.30 16 10 N -0.69 -12.69 5.02 -56.12 -0.28 -12.98 16 11 C 0.24 5.46 1.83 -69.08 -0.13 5.33 16 12 H 0.05 1.34 6.64 -51.93 -0.34 1.00 16 13 C -0.54 -13.88 9.31 -34.44 -0.32 -14.21 16 14 H 0.08 2.14 7.98 -52.49 -0.42 1.72 16 15 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 16 N -0.89 -25.55 13.96 55.43 0.77 -24.78 16 17 Si 0.88 21.01 24.41 -169.99 -4.15 16.86 16 18 H -0.27 -6.34 6.83 56.52 0.39 -5.96 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 21 C -0.14 -2.94 5.11 -26.73 -0.14 -3.07 16 22 C -0.15 -2.80 8.51 37.16 0.32 -2.49 16 23 C -0.15 -2.16 6.73 -38.90 -0.26 -2.42 16 24 Br 0.01 0.18 32.40 -68.01 -2.20 -2.02 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.76 8.02 -51.93 -0.42 0.34 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.39 6.05 7.72 -40.82 -0.32 5.74 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.27 3.21 -51.93 -0.17 1.11 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.13 7.84 -51.93 -0.41 0.73 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.98 5.64 -51.93 -0.29 0.69 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -30.24 313.58 -7.72 -37.95 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.65 Total: 4.20 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.64 Total: -6.12 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 1.13 Total: -45.30 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Atomic # 35 Polarization: 0.18 SS G_CDS: -2.20 Total: -2.02 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.24 -7.72 -37.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279837157.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.789 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds