Wall clock time and date at job start Tue Mar 31 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46920 * 184.49831 * 3 2 1 5 5 C 1.36937 * 119.99645 * 86.84169 * 4 3 2 6 6 H 1.08007 * 119.99928 * 173.11283 * 5 4 3 7 7 C 1.38805 * 120.00341 * 352.82802 * 5 4 3 8 8 N 1.31619 * 119.99958 * 335.44500 * 7 5 4 9 9 Si 1.86801 * 120.00439 * 155.43902 * 7 5 4 10 10 H 1.48503 * 109.46998 * 90.00022 * 9 7 5 11 11 H 1.48496 * 109.47460 * 210.00694 * 9 7 5 12 12 H 1.48506 * 109.46784 * 330.00667 * 9 7 5 13 13 S 1.65593 * 120.00257 * 266.83975 * 4 3 2 14 14 O 1.42100 * 106.40406 * 23.53926 * 13 4 3 15 15 O 1.42102 * 106.40389 * 156.46012 * 13 4 3 16 16 C 1.76204 * 107.21997 * 270.00025 * 13 4 3 17 17 C 1.33854 * 122.44108 * 269.70807 * 16 13 4 18 18 S 1.70620 * 110.95989 * 179.88777 * 17 16 13 19 19 C 1.75830 * 91.56419 * 0.31502 * 18 17 16 20 20 C 1.46389 * 125.46684 * 179.78488 * 19 18 17 21 21 O 1.21630 * 120.00333 * 180.02562 * 20 19 18 22 22 O 1.34905 * 119.99606 * 0.04330 * 20 19 18 23 23 C 1.45200 * 116.99960 * 179.97438 * 22 20 19 24 24 C 1.36758 * 109.07384 * 359.82236 * 19 18 17 25 25 H 4.40642 * 5.51363 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46970 * 64.50267 * 3 2 1 27 27 H 1.08994 * 109.47306 * 304.50109 * 3 2 1 28 28 H 0.96998 * 120.00252 * 179.97438 * 8 7 5 29 29 H 1.08006 * 124.52581 * 359.97438 * 17 16 13 30 30 H 1.09000 * 109.47055 * 300.00609 * 23 22 20 31 31 H 1.09002 * 109.46888 * 59.99813 * 23 22 20 32 32 H 1.08996 * 109.47095 * 180.02562 * 23 22 20 33 33 H 1.07999 * 123.35815 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3778 0.1083 5 6 3.3000 1.9502 1.3412 6 1 3.7630 2.9222 1.4272 7 6 2.8682 1.2840 2.4797 8 7 1.9080 0.3880 2.3935 9 14 3.6500 1.6587 4.1344 10 1 2.9037 2.7586 4.7967 11 1 3.6056 0.4453 4.9891 12 1 5.0625 2.0705 3.9325 13 16 3.4838 2.2423 -1.2600 14 8 2.7283 1.6547 -2.3102 15 8 3.3839 3.6145 -0.9043 16 6 5.1788 1.9497 -1.6424 17 6 6.1654 2.7196 -1.1674 18 16 7.6850 2.1727 -1.7175 19 6 6.9395 0.8647 -2.6257 20 6 7.6551 -0.1226 -3.4357 21 8 7.0372 -0.9886 -4.0253 22 8 9.0001 -0.0722 -3.5278 23 6 9.6430 -1.0833 -4.3479 24 6 5.5837 0.9180 -2.4547 25 1 -1.0502 -0.0005 0.0002 26 1 3.0095 -0.4416 -0.9276 27 1 3.0096 -0.5812 0.8469 28 1 1.6065 -0.0779 3.1891 29 1 6.0191 3.5724 -0.5210 30 1 9.4134 -2.0724 -3.9517 31 1 9.2763 -1.0079 -5.3716 32 1 10.7219 -0.9288 -4.3357 33 1 4.8995 0.2186 -2.9121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281148839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:11 Heat of formation + Delta-G solvation = -40.085135 kcal Electronic energy + Delta-G solvation = -23405.165576 eV Core-core repulsion = 19653.145938 eV Total energy + Delta-G solvation = -3752.019638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.38795 -37.75940 -36.36130 -36.34342 -36.20426 -34.86038 -31.85301 -31.08000 -30.46038 -27.87096 -26.53544 -25.20264 -23.86503 -22.51315 -19.71322 -19.01313 -18.50723 -17.91306 -17.08836 -16.91417 -16.51196 -16.41624 -16.23566 -15.71272 -14.62595 -14.43472 -13.90627 -13.76885 -13.53921 -13.37966 -13.08006 -12.91173 -12.83864 -12.44838 -12.31676 -11.75230 -11.41260 -11.34640 -11.11203 -11.00019 -10.99206 -10.95528 -10.78529 -10.59527 -10.33678 -10.25372 -9.68210 -9.16298 -9.04947 -8.77693 -8.75045 -8.24571 -6.39392 -3.90307 0.33043 1.11479 1.49151 1.86822 1.96145 2.52601 2.80877 3.13853 3.21556 3.23655 3.80787 4.12246 4.31352 4.49037 4.65903 4.72092 4.89899 4.96104 4.98101 5.04404 5.19617 5.30173 5.50919 5.64620 5.68969 6.00411 6.11532 6.18459 6.22456 6.72173 6.99193 7.25323 7.41783 7.57556 8.22318 8.75278 9.03947 9.12409 10.56127 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.004441 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.056603 B = 6303.662119 C = 6780.112977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.095 4.095 3 C 0.247 3.753 4 N -0.824 5.824 5 C -0.314 4.314 6 H 0.114 0.886 7 C 0.047 3.953 8 N -0.836 5.836 9 Si 0.904 3.096 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 S 2.641 3.359 14 O -0.971 6.971 15 O -0.963 6.963 16 C -0.702 4.702 17 C -0.104 4.104 18 S 0.249 5.751 19 C -0.287 4.287 20 C 0.545 3.455 21 O -0.498 6.498 22 O -0.358 6.358 23 C 0.038 3.962 24 C 0.039 3.961 25 H 0.198 0.802 26 H 0.063 0.937 27 H 0.107 0.893 28 H 0.271 0.729 29 H 0.188 0.812 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.926 -1.070 -6.085 14.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.098 4.098 3 C 0.122 3.878 4 N -0.655 5.655 5 C -0.449 4.449 6 H 0.131 0.869 7 C -0.162 4.162 8 N -0.474 5.474 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.194 1.194 13 S 2.728 3.272 14 O -0.961 6.961 15 O -0.953 6.953 16 C -0.793 4.793 17 C -0.244 4.244 18 S 0.517 5.483 19 C -0.405 4.405 20 C 0.389 3.611 21 O -0.387 6.387 22 O -0.276 6.276 23 C -0.055 4.055 24 C 0.006 3.994 25 H 0.215 0.785 26 H 0.081 0.919 27 H 0.124 0.876 28 H 0.082 0.918 29 H 0.205 0.795 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 13.779 -0.439 -6.564 15.269 hybrid contribution -0.652 -0.776 0.895 1.352 sum 13.127 -1.216 -5.669 14.350 Atomic orbital electron populations 1.24176 0.95295 1.01637 1.07434 1.22820 0.94032 0.98482 0.94447 1.17853 0.84993 0.84338 1.00594 1.53523 1.68598 1.23130 1.20211 1.19342 1.40608 1.03020 0.81916 0.86857 1.25117 0.95153 0.96692 0.99214 1.70195 1.21117 1.25843 1.30222 0.86313 0.80218 0.78162 0.82310 1.20245 1.20709 1.19368 1.05122 0.74873 0.74339 0.72870 1.93489 1.68643 1.78622 1.55317 1.93453 1.86266 1.32236 1.83347 1.31073 1.31165 1.05396 1.11655 1.25507 0.96835 1.02053 1.00029 1.82941 1.06808 1.19696 1.38890 1.23533 0.97226 1.06136 1.13653 1.19598 0.80678 0.82496 0.78351 1.90901 1.68344 1.35490 1.44013 1.86579 1.21148 1.53821 1.66003 1.23283 0.97349 0.90461 0.94429 1.20425 0.93016 0.94441 0.91483 0.78507 0.91892 0.87554 0.91797 0.79525 0.91669 0.91722 0.87926 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.90 19.25 29.55 0.57 -5.34 16 2 C -0.10 -2.26 11.24 -37.12 -0.42 -2.67 16 3 C 0.25 5.54 5.10 -6.83 -0.03 5.50 16 4 N -0.82 -19.07 2.88 -62.77 -0.18 -19.25 16 5 C -0.31 -7.60 9.38 -15.06 -0.14 -7.74 16 6 H 0.11 2.67 7.40 -52.48 -0.39 2.28 16 7 C 0.05 1.14 4.93 -17.43 -0.09 1.05 16 8 N -0.84 -20.71 8.94 55.49 0.50 -20.22 16 9 Si 0.90 18.58 29.62 -169.99 -5.04 13.54 16 10 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 13 S 2.64 57.21 5.66 -107.50 -0.61 56.60 16 14 O -0.97 -22.57 16.64 -57.17 -0.95 -23.52 16 15 O -0.96 -22.71 16.49 -57.17 -0.94 -23.65 16 16 C -0.70 -12.58 5.87 -41.42 -0.24 -12.82 16 17 C -0.10 -1.60 10.40 29.19 0.30 -1.29 16 18 S 0.25 3.19 22.92 -107.50 -2.46 0.73 16 19 C -0.29 -4.44 6.45 -36.84 -0.24 -4.68 16 20 C 0.54 8.24 7.92 34.01 0.27 8.51 16 21 O -0.50 -8.58 16.64 -19.36 -0.32 -8.90 16 22 O -0.36 -4.44 10.42 -41.05 -0.43 -4.87 16 23 C 0.04 0.33 10.57 101.05 1.07 1.40 16 24 C 0.04 0.66 9.53 -40.42 -0.39 0.28 16 25 H 0.20 3.58 7.80 -54.08 -0.42 3.16 16 26 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 27 H 0.11 2.40 6.42 -51.93 -0.33 2.07 16 28 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 29 H 0.19 2.57 7.97 -52.48 -0.42 2.15 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.17 2.78 7.98 -52.49 -0.42 2.36 16 LS Contribution 330.16 15.07 4.98 4.98 Total: -1.00 -31.24 330.16 -7.58 -38.81 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -2.78 Total: 3.57 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 0.66 Total: -17.82 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.32 Total: -39.46 kcal Atomic # 8 Polarization: -58.30 SS G_CDS: -2.64 Total: -60.95 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.04 Total: 13.54 kcal Atomic # 16 Polarization: 60.40 SS G_CDS: -3.07 Total: 57.33 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.24 -7.58 -38.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281148839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.270 kcal (2) G-P(sol) polarization free energy of solvation -31.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds