Wall clock time and date at job start Tue Mar 31 2020 05:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46920 * 184.49831 * 3 2 1 5 5 C 1.36937 * 119.99645 * 86.84169 * 4 3 2 6 6 H 1.08007 * 119.99928 * 173.11283 * 5 4 3 7 7 C 1.38805 * 120.00341 * 352.82802 * 5 4 3 8 8 N 1.31619 * 119.99958 * 335.44500 * 7 5 4 9 9 Si 1.86801 * 120.00439 * 155.43902 * 7 5 4 10 10 H 1.48503 * 109.46998 * 90.00022 * 9 7 5 11 11 H 1.48496 * 109.47460 * 210.00694 * 9 7 5 12 12 H 1.48506 * 109.46784 * 330.00667 * 9 7 5 13 13 S 1.65593 * 120.00257 * 266.83975 * 4 3 2 14 14 O 1.42100 * 106.40406 * 23.53926 * 13 4 3 15 15 O 1.42102 * 106.40389 * 156.46012 * 13 4 3 16 16 C 1.76204 * 107.21997 * 270.00025 * 13 4 3 17 17 C 1.33854 * 122.44108 * 269.70807 * 16 13 4 18 18 S 1.70620 * 110.95989 * 179.88777 * 17 16 13 19 19 C 1.75830 * 91.56419 * 0.31502 * 18 17 16 20 20 C 1.46389 * 125.46684 * 179.78488 * 19 18 17 21 21 O 1.21630 * 120.00333 * 180.02562 * 20 19 18 22 22 O 1.34905 * 119.99606 * 0.04330 * 20 19 18 23 23 C 1.45200 * 116.99960 * 179.97438 * 22 20 19 24 24 C 1.36758 * 109.07384 * 359.82236 * 19 18 17 25 25 H 4.40642 * 5.51363 * 180.02562 * 4 1 2 26 26 H 1.09002 * 109.46970 * 64.50267 * 3 2 1 27 27 H 1.08994 * 109.47306 * 304.50109 * 3 2 1 28 28 H 0.96998 * 120.00252 * 179.97438 * 8 7 5 29 29 H 1.08006 * 124.52581 * 359.97438 * 17 16 13 30 30 H 1.09000 * 109.47055 * 300.00609 * 23 22 20 31 31 H 1.09002 * 109.46888 * 59.99813 * 23 22 20 32 32 H 1.08996 * 109.47095 * 180.02562 * 23 22 20 33 33 H 1.07999 * 123.35815 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3778 0.1083 5 6 3.3000 1.9502 1.3412 6 1 3.7630 2.9222 1.4272 7 6 2.8682 1.2840 2.4797 8 7 1.9080 0.3880 2.3935 9 14 3.6500 1.6587 4.1344 10 1 2.9037 2.7586 4.7967 11 1 3.6056 0.4453 4.9891 12 1 5.0625 2.0705 3.9325 13 16 3.4838 2.2423 -1.2600 14 8 2.7283 1.6547 -2.3102 15 8 3.3839 3.6145 -0.9043 16 6 5.1788 1.9497 -1.6424 17 6 6.1654 2.7196 -1.1674 18 16 7.6850 2.1727 -1.7175 19 6 6.9395 0.8647 -2.6257 20 6 7.6551 -0.1226 -3.4357 21 8 7.0372 -0.9886 -4.0253 22 8 9.0001 -0.0722 -3.5278 23 6 9.6430 -1.0833 -4.3479 24 6 5.5837 0.9180 -2.4547 25 1 -1.0502 -0.0005 0.0002 26 1 3.0095 -0.4416 -0.9276 27 1 3.0096 -0.5812 0.8469 28 1 1.6065 -0.0779 3.1891 29 1 6.0191 3.5724 -0.5210 30 1 9.4134 -2.0724 -3.9517 31 1 9.2763 -1.0079 -5.3716 32 1 10.7219 -0.9288 -4.3357 33 1 4.8995 0.2186 -2.9121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281148839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:10 Heat of formation + Delta-G solvation = -60.809660 kcal Electronic energy + Delta-G solvation = -23406.064259 eV Core-core repulsion = 19653.145938 eV Total energy + Delta-G solvation = -3752.918321 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.49454 -39.05689 -38.20160 -37.92332 -37.47918 -36.76524 -33.55563 -32.80114 -31.70297 -28.74856 -28.24408 -26.46988 -25.60669 -23.82490 -21.05065 -20.24491 -20.14046 -19.62957 -18.63114 -18.26338 -18.04920 -17.66523 -17.52117 -17.07204 -16.33003 -16.10277 -15.26851 -15.16186 -14.89822 -14.82637 -14.39491 -14.27231 -14.17517 -14.00570 -13.44834 -13.19533 -13.16118 -13.05673 -12.79636 -12.63510 -12.60065 -12.30431 -12.04725 -11.94148 -11.90117 -11.80690 -11.35625 -10.92045 -10.51387 -10.37903 -10.00450 -9.91136 -8.05638 -5.73569 -0.91964 -0.51981 0.27482 0.51654 0.65425 1.50889 1.51246 1.54105 1.57956 1.63830 2.09732 2.43291 2.54372 2.76981 2.91830 3.19524 3.43925 3.70998 3.88889 3.99850 4.11979 4.28119 4.32888 4.36965 4.41953 4.66033 4.73353 4.82859 5.00110 5.12151 5.29989 5.56027 5.70800 6.47318 6.48947 7.08111 7.28387 7.41131 8.91277 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.004441 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.056603 B = 6303.662119 C = 6780.112977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.136 4.136 3 C 0.253 3.747 4 N -0.857 5.857 5 C -0.351 4.351 6 H 0.110 0.890 7 C 0.004 3.996 8 N -0.884 5.884 9 Si 0.965 3.035 10 H -0.285 1.285 11 H -0.285 1.285 12 H -0.257 1.257 13 S 2.696 3.304 14 O -0.994 6.994 15 O -0.986 6.986 16 C -0.712 4.712 17 C -0.118 4.118 18 S 0.388 5.612 19 C -0.304 4.304 20 C 0.547 3.453 21 O -0.526 6.526 22 O -0.354 6.354 23 C 0.029 3.971 24 C 0.020 3.980 25 H 0.229 0.771 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.263 0.737 29 H 0.205 0.795 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.636 -0.232 -7.185 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.139 4.139 3 C 0.127 3.873 4 N -0.689 5.689 5 C -0.479 4.479 6 H 0.128 0.872 7 C -0.199 4.199 8 N -0.523 5.523 9 Si 0.790 3.210 10 H -0.211 1.211 11 H -0.211 1.211 12 H -0.181 1.181 13 S 2.787 3.213 14 O -0.984 6.984 15 O -0.976 6.976 16 C -0.812 4.812 17 C -0.259 4.259 18 S 0.655 5.345 19 C -0.423 4.423 20 C 0.392 3.608 21 O -0.417 6.417 22 O -0.271 6.271 23 C -0.063 4.063 24 C -0.012 4.012 25 H 0.246 0.754 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.222 0.778 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.159 0.841 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 17.418 0.403 -7.536 18.983 hybrid contribution -1.448 -0.890 0.769 1.866 sum 15.970 -0.488 -6.766 17.351 Atomic orbital electron populations 1.25070 0.96447 1.00701 1.06585 1.23645 0.95406 0.99512 0.95352 1.17928 0.84397 0.83932 1.01001 1.52962 1.74556 1.22367 1.19029 1.19375 1.41595 1.04782 0.82188 0.87223 1.25720 0.95392 0.97259 1.01570 1.70313 1.23620 1.28361 1.29986 0.85388 0.79700 0.77210 0.78690 1.21146 1.21075 1.18065 1.01415 0.74890 0.72979 0.72044 1.93482 1.69661 1.78924 1.56345 1.93446 1.87009 1.33349 1.83825 1.29857 1.27563 1.08329 1.15419 1.25924 0.98602 1.02042 0.99322 1.82559 1.02182 1.15303 1.34425 1.23778 0.97107 1.07480 1.13939 1.19570 0.81582 0.81880 0.77787 1.90893 1.69152 1.36564 1.45117 1.86556 1.19343 1.54824 1.66366 1.23684 0.99097 0.89665 0.93901 1.20315 0.94215 0.94491 0.92180 0.75418 0.90210 0.88169 0.92685 0.77775 0.91690 0.91555 0.84094 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.28 19.25 74.32 1.43 -10.84 16 2 C -0.14 -6.75 11.24 31.13 0.35 -6.40 16 3 C 0.25 11.80 5.10 84.57 0.43 12.23 16 4 N -0.86 -40.78 2.88 -352.52 -1.02 -41.79 16 5 C -0.35 -17.53 9.38 84.03 0.79 -16.74 16 6 H 0.11 5.30 7.40 -2.91 -0.02 5.28 16 7 C 0.00 0.19 4.93 84.86 0.42 0.61 16 8 N -0.88 -46.20 8.94 21.65 0.19 -46.00 16 9 Si 0.97 39.51 29.62 68.60 2.03 41.54 16 10 H -0.29 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.29 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 13 S 2.70 117.14 5.66 -56.49 -0.32 116.82 16 14 O -0.99 -46.65 16.64 -128.00 -2.13 -48.78 16 15 O -0.99 -46.37 16.49 -128.00 -2.11 -48.48 16 16 C -0.71 -24.38 5.87 21.08 0.12 -24.25 16 17 C -0.12 -3.23 10.40 66.82 0.70 -2.53 16 18 S 0.39 8.01 22.92 -56.49 -1.29 6.71 16 19 C -0.30 -8.48 6.45 24.05 0.16 -8.33 16 20 C 0.55 15.07 7.92 69.94 0.55 15.62 16 21 O -0.53 -17.35 16.64 19.41 0.32 -17.03 16 22 O -0.35 -7.42 10.42 -58.20 -0.61 -8.03 16 23 C 0.03 0.40 10.57 113.37 1.20 1.60 16 24 C 0.02 0.65 9.53 21.73 0.21 0.86 16 25 H 0.23 8.31 7.80 -4.41 -0.03 8.27 16 26 H 0.08 3.27 7.68 -2.39 -0.02 3.25 16 27 H 0.10 4.80 6.42 -2.39 -0.02 4.78 16 28 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 29 H 0.21 4.89 7.97 -2.91 -0.02 4.87 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.16 5.29 7.98 -2.91 -0.02 5.27 16 Total: -1.00 -70.06 330.16 2.58 -67.48 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.16 Total: 15.75 kcal Atomic # 6 Polarization: -44.53 SS G_CDS: 6.35 Total: -38.18 kcal Atomic # 7 Polarization: -86.97 SS G_CDS: -0.82 Total: -87.80 kcal Atomic # 8 Polarization: -117.79 SS G_CDS: -4.52 Total: -122.31 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Atomic # 16 Polarization: 125.14 SS G_CDS: -1.61 Total: 123.53 kcal Total: -70.06 2.58 -67.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281148839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.666 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds