Wall clock time and date at job start Tue Mar 31 2020 05:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47039 * 89.23955 * 3 2 1 5 5 C 1.36930 * 120.00189 * 274.63345 * 4 3 2 6 6 H 1.07995 * 120.00060 * 187.39060 * 5 4 3 7 7 C 1.38810 * 120.00020 * 7.39962 * 5 4 3 8 8 N 1.31618 * 120.00131 * 12.97573 * 7 5 4 9 9 Si 1.86804 * 120.00019 * 192.98109 * 7 5 4 10 10 H 1.48507 * 109.47151 * 89.99607 * 9 7 5 11 11 H 1.48499 * 109.47232 * 209.99619 * 9 7 5 12 12 H 1.48498 * 109.47037 * 330.00049 * 9 7 5 13 13 S 1.65604 * 119.99445 * 94.63610 * 4 3 2 14 14 O 1.42104 * 106.39613 * 208.97823 * 13 4 3 15 15 O 1.42094 * 106.40646 * 341.89377 * 13 4 3 16 16 C 1.76195 * 107.21919 * 95.43974 * 13 4 3 17 17 C 1.37418 * 123.35378 * 346.02202 * 16 13 4 18 18 C 1.33864 * 115.10908 * 180.02562 * 17 16 13 19 19 S 1.70617 * 110.96002 * 359.97438 * 18 17 16 20 20 C 1.36749 * 123.35710 * 165.72925 * 16 13 4 21 21 C 1.46395 * 125.46349 * 359.97438 * 20 16 13 22 22 O 1.21632 * 119.99920 * 6.70706 * 21 20 16 23 23 O 1.34899 * 120.00102 * 186.70605 * 21 20 16 24 24 C 1.45200 * 116.99891 * 179.97438 * 23 21 20 25 25 H 4.40642 * 5.51392 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.46879 * 329.24239 * 3 2 1 27 27 H 1.08996 * 109.47190 * 209.24098 * 3 2 1 28 28 H 0.97006 * 119.99947 * 180.02562 * 8 7 5 29 29 H 1.07994 * 122.44804 * 359.97438 * 17 16 13 30 30 H 1.07997 * 124.51951 * 179.97438 * 18 17 16 31 31 H 1.08998 * 109.47156 * 180.02562 * 24 23 21 32 32 H 1.09002 * 109.47191 * 299.99850 * 24 23 21 33 33 H 1.08995 * 109.47007 * 60.00207 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0175 -1.3811 5 6 3.2728 -1.2082 -2.0428 6 1 3.7433 -1.2345 -3.0146 7 6 2.8082 -2.3816 -1.4648 8 7 2.0159 -2.3293 -0.4151 9 14 3.3077 -4.0350 -2.1765 10 1 4.5567 -4.4992 -1.5209 11 1 2.2260 -5.0239 -1.9373 12 1 3.5375 -3.8961 -3.6370 13 16 3.5190 1.4023 -2.1419 14 8 3.2906 1.1892 -3.5282 15 8 2.8891 2.4382 -1.4008 16 6 5.2546 1.6409 -1.9545 17 6 6.0235 0.9288 -1.0658 18 6 7.3243 1.2448 -1.0597 19 16 7.6585 2.4765 -2.1921 20 6 5.9717 2.5492 -2.6832 21 6 5.4226 3.4409 -3.7061 22 8 4.2204 3.4978 -3.8815 23 8 6.2500 4.1996 -4.4541 24 6 5.6359 5.0598 -5.4497 25 1 -1.0500 0.0002 0.0000 26 1 3.0097 -0.8823 0.5256 27 1 3.0090 0.8975 0.5020 28 1 1.6916 -3.1493 -0.0109 29 1 5.6086 0.1702 -0.4188 30 1 8.0636 0.7819 -0.4229 31 1 6.4111 5.6132 -5.9797 32 1 5.0748 4.4515 -6.1592 33 1 4.9608 5.7601 -4.9580 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281375073.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:14 Heat of formation + Delta-G solvation = -29.483546 kcal Electronic energy + Delta-G solvation = -24180.742355 eV Core-core repulsion = 20429.182436 eV Total energy + Delta-G solvation = -3751.559919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.35947 -37.71360 -36.47506 -36.12582 -36.01952 -34.64501 -31.71142 -31.03585 -30.43009 -27.79658 -26.48537 -25.28668 -23.68009 -22.03975 -20.18657 -18.95747 -18.46674 -17.82995 -17.25825 -16.52989 -16.43643 -16.35373 -15.98287 -15.22282 -14.65362 -14.37948 -14.02588 -13.69467 -13.51875 -13.34913 -13.18523 -12.80945 -12.63631 -12.35623 -12.14144 -11.50785 -11.25686 -11.18817 -11.01833 -10.96702 -10.88788 -10.82244 -10.68477 -10.44135 -10.23163 -10.15923 -9.71287 -9.07475 -9.05411 -8.72600 -8.66989 -8.16146 -6.21720 -3.87966 0.17936 1.12717 1.59582 1.90079 2.19333 2.52196 2.80945 3.17785 3.25768 3.29543 3.82689 4.18783 4.36862 4.52757 4.63692 4.81332 5.02565 5.05413 5.09927 5.15700 5.32280 5.46165 5.67797 5.78531 5.86939 6.04768 6.21002 6.21576 6.24639 6.85836 7.11664 7.36326 7.53217 7.60641 8.35174 8.83088 9.09308 9.22481 10.71157 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.015340 B = 0.005252 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.851365 B = 5330.457085 C = 5885.177233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.087 4.087 3 C 0.242 3.758 4 N -0.837 5.837 5 C -0.307 4.307 6 H 0.110 0.890 7 C 0.041 3.959 8 N -0.863 5.863 9 Si 0.917 3.083 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.270 1.270 13 S 2.656 3.344 14 O -0.942 6.942 15 O -0.966 6.966 16 C -0.586 4.586 17 C -0.075 4.075 18 C -0.242 4.242 19 S 0.251 5.749 20 C -0.170 4.170 21 C 0.523 3.477 22 O -0.466 6.466 23 O -0.355 6.355 24 C 0.036 3.964 25 H 0.197 0.803 26 H 0.125 0.875 27 H 0.060 0.940 28 H 0.268 0.732 29 H 0.163 0.837 30 H 0.176 0.824 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.016 7.648 -1.042 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.090 4.090 3 C 0.117 3.883 4 N -0.669 5.669 5 C -0.440 4.440 6 H 0.128 0.872 7 C -0.165 4.165 8 N -0.504 5.504 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.194 1.194 13 S 2.740 3.260 14 O -0.932 6.932 15 O -0.956 6.956 16 C -0.680 4.680 17 C -0.104 4.104 18 C -0.380 4.380 19 S 0.521 5.479 20 C -0.290 4.290 21 C 0.365 3.635 22 O -0.352 6.352 23 O -0.272 6.272 24 C -0.058 4.058 25 H 0.214 0.786 26 H 0.142 0.858 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.181 0.819 30 H 0.194 0.806 31 H 0.123 0.877 32 H 0.088 0.912 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.538 8.999 -1.881 15.547 hybrid contribution -0.666 -1.980 0.297 2.110 sum 11.872 7.018 -1.584 13.882 Atomic orbital electron populations 1.24184 0.95343 1.08196 1.02121 1.22957 0.94156 0.93867 0.98035 1.18152 0.84907 1.01470 0.83744 1.53521 1.69666 1.21487 1.22265 1.19414 1.39233 0.83534 1.01811 0.87242 1.25122 0.95635 0.99032 0.96728 1.70069 1.29659 1.27934 1.22713 0.86075 0.78212 0.81800 0.79522 1.20363 1.20917 1.19432 1.04377 0.74518 0.72810 0.74336 1.93492 1.83524 1.85260 1.30896 1.93488 1.73172 1.55655 1.73246 1.32087 1.32305 1.01589 1.02047 1.19713 0.92115 1.00023 0.98570 1.25581 1.01365 1.04703 1.06336 1.82791 1.04643 1.31035 1.29476 1.23171 0.99030 1.03633 1.03180 1.19756 0.85042 0.78732 0.79990 1.91031 1.14998 1.63161 1.66058 1.86524 1.40124 1.52870 1.47652 1.23365 0.99687 0.92997 0.89742 0.78571 0.85802 0.92253 0.92052 0.81918 0.80630 0.87744 0.91200 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.44 19.25 29.55 0.57 -5.87 16 2 C -0.09 -2.16 11.31 -37.12 -0.42 -2.58 16 3 C 0.24 5.59 5.15 -6.83 -0.04 5.55 16 4 N -0.84 -20.37 2.36 -62.78 -0.15 -20.52 16 5 C -0.31 -7.77 9.43 -15.06 -0.14 -7.91 16 6 H 0.11 2.77 7.47 -52.49 -0.39 2.38 16 7 C 0.04 1.00 5.22 -17.43 -0.09 0.91 16 8 N -0.86 -21.74 8.34 55.49 0.46 -21.28 16 9 Si 0.92 19.48 29.57 -169.99 -5.03 14.46 16 10 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 S 2.66 64.69 4.29 -107.50 -0.46 64.23 16 14 O -0.94 -25.53 15.25 -66.13 -1.01 -26.54 16 15 O -0.97 -25.04 16.81 -57.19 -0.96 -26.00 16 16 C -0.59 -11.71 5.86 -40.42 -0.24 -11.95 16 17 C -0.08 -1.25 9.74 -41.42 -0.40 -1.65 16 18 C -0.24 -3.13 10.92 29.20 0.32 -2.81 16 19 S 0.25 3.23 22.93 -107.50 -2.47 0.77 16 20 C -0.17 -3.10 6.45 -36.84 -0.24 -3.34 16 21 C 0.52 9.89 7.87 34.01 0.27 10.16 16 22 O -0.47 -10.43 13.44 -26.66 -0.36 -10.79 16 23 O -0.35 -5.23 10.43 -41.04 -0.43 -5.65 16 24 C 0.04 0.39 10.57 101.05 1.07 1.46 16 25 H 0.20 3.72 7.80 -54.09 -0.42 3.30 16 26 H 0.12 2.82 6.13 -51.93 -0.32 2.50 16 27 H 0.06 1.22 7.47 -51.93 -0.39 0.83 16 28 H 0.27 6.48 8.31 -40.82 -0.34 6.15 16 29 H 0.16 2.55 7.80 -52.49 -0.41 2.14 16 30 H 0.18 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 324.01 15.07 4.88 4.88 Total: -1.00 -33.79 324.01 -7.61 -41.40 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -2.76 Total: 3.07 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 0.66 Total: -18.02 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.32 Total: -41.79 kcal Atomic # 8 Polarization: -66.23 SS G_CDS: -2.76 Total: -68.99 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Atomic # 16 Polarization: 67.93 SS G_CDS: -2.93 Total: 65.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.79 -7.61 -41.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281375073.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.915 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds