Wall clock time and date at job start Tue Mar 31 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47082 * 74.82074 * 3 2 1 5 5 C 1.36936 * 119.99892 * 273.24945 * 4 3 2 6 6 H 1.07996 * 120.00016 * 186.70401 * 5 4 3 7 7 C 1.38811 * 120.00007 * 6.70549 * 5 4 3 8 8 N 1.31611 * 120.00302 * 25.18904 * 7 5 4 9 9 Si 1.86809 * 119.99829 * 205.19444 * 7 5 4 10 10 H 1.48495 * 109.47072 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47025 * 120.00091 * 9 7 5 12 12 H 1.48503 * 109.46799 * 239.99685 * 9 7 5 13 13 S 1.65602 * 120.00148 * 93.25423 * 4 3 2 14 14 O 1.42098 * 106.40215 * 23.53877 * 13 4 3 15 15 O 1.42098 * 106.40057 * 156.45766 * 13 4 3 16 16 C 1.76200 * 107.21488 * 269.99893 * 13 4 3 17 17 C 1.32738 * 124.70102 * 90.00339 * 16 13 4 18 18 C 1.44467 * 113.08668 * 180.02562 * 17 16 13 19 19 C 1.47038 * 123.47294 * 179.97438 * 18 17 16 20 20 O 1.21555 * 119.99972 * 359.97438 * 19 18 17 21 21 O 1.34803 * 119.99803 * 179.97438 * 19 18 17 22 22 C 1.45198 * 116.99353 * 179.97438 * 21 19 18 23 23 C 1.36105 * 113.05347 * 359.97438 * 18 17 16 24 24 S 1.70451 * 110.80238 * 359.72969 * 23 18 17 25 25 H 4.40632 * 5.51460 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.47109 * 314.81745 * 3 2 1 27 27 H 1.09000 * 109.47315 * 194.81895 * 3 2 1 28 28 H 0.97002 * 120.00181 * 180.02562 * 8 7 5 29 29 H 1.07995 * 123.45807 * 0.02562 * 17 16 13 30 30 H 1.09004 * 109.47329 * 299.98983 * 22 21 19 31 31 H 1.08995 * 109.47526 * 59.99744 * 22 21 19 32 32 H 1.09003 * 109.46784 * 179.97438 * 22 21 19 33 33 H 1.07997 * 124.59681 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.3608 -1.3330 5 6 3.2998 -1.6783 -1.6676 6 1 3.7607 -1.9429 -2.6078 7 6 2.8752 -2.6737 -0.7983 8 7 1.9121 -2.4274 0.0642 9 14 3.6707 -4.3631 -0.8528 10 1 4.7198 -4.3825 -1.9035 11 1 4.2841 -4.6640 0.4656 12 1 2.6399 -5.3858 -1.1641 13 16 3.4867 0.8239 -2.4352 14 8 3.7567 2.0011 -1.6865 15 8 4.4122 0.2566 -3.3521 16 6 2.0134 1.1418 -3.3479 17 6 1.0954 2.0399 -3.0121 18 6 -0.0119 2.0917 -3.9385 19 6 -1.1551 3.0037 -3.7858 20 8 -1.2018 3.7668 -2.8407 21 8 -2.1514 2.9936 -4.6938 22 6 -3.2483 3.9205 -4.4791 23 6 0.1122 1.2094 -4.9674 24 16 1.5601 0.3204 -4.8311 25 1 -1.0499 0.0001 -0.0002 26 1 3.0096 -0.7236 0.7290 27 1 3.0089 0.9943 0.2628 28 1 1.6156 -3.1229 0.6719 29 1 1.1687 2.6673 -2.1362 30 1 -3.7228 3.7063 -3.5214 31 1 -2.8660 4.9412 -4.4750 32 1 -3.9794 3.8098 -5.2799 33 1 -0.6067 1.0921 -5.7647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281444402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:19 Heat of formation + Delta-G solvation = -49.029640 kcal Electronic energy + Delta-G solvation = -23681.642134 eV Core-core repulsion = 19929.234633 eV Total energy + Delta-G solvation = -3752.407501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.26020 -37.06590 -36.45864 -36.08861 -35.81294 -34.49978 -32.16653 -31.23954 -30.07688 -27.70771 -26.70753 -24.86223 -23.97376 -22.11547 -19.43297 -18.78970 -18.22647 -17.77996 -17.42036 -16.73736 -16.46648 -16.29531 -16.12440 -15.01529 -14.77984 -14.51197 -13.83155 -13.58146 -13.52381 -13.34178 -12.73105 -12.66075 -12.61090 -12.34650 -12.08759 -11.97259 -11.36568 -11.12142 -11.01931 -10.85770 -10.82115 -10.81140 -10.55167 -10.47726 -10.36770 -10.11698 -9.80499 -9.33311 -9.04361 -8.81255 -8.45965 -8.20106 -6.77146 -4.10172 0.77092 1.49687 1.82902 1.94423 2.20307 2.80350 2.98767 3.07661 3.15587 3.24928 3.70444 3.90370 4.13035 4.46862 4.54965 4.94091 4.99177 5.02392 5.08189 5.09256 5.41594 5.51730 5.57334 5.67839 5.95166 6.17702 6.24611 6.34424 6.57575 6.64711 6.90039 7.03879 7.12077 7.84446 8.00358 8.38327 8.81197 8.86622 10.12613 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.004748 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.442498 B = 5896.183505 C = 6203.846172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.116 4.116 3 C 0.232 3.768 4 N -0.781 5.781 5 C -0.229 4.229 6 H 0.128 0.872 7 C 0.028 3.972 8 N -0.804 5.804 9 Si 0.933 3.067 10 H -0.258 1.258 11 H -0.273 1.273 12 H -0.277 1.277 13 S 2.516 3.484 14 O -0.990 6.990 15 O -0.979 6.979 16 C -0.757 4.757 17 C 0.018 3.982 18 C -0.172 4.172 19 C 0.531 3.469 20 O -0.506 6.506 21 O -0.359 6.359 22 C 0.038 3.962 23 C -0.189 4.189 24 S 0.295 5.705 25 H 0.195 0.805 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.280 0.720 29 H 0.157 0.843 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 2.066 -5.703 8.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.119 4.119 3 C 0.106 3.894 4 N -0.602 5.602 5 C -0.380 4.380 6 H 0.145 0.855 7 C -0.187 4.187 8 N -0.442 5.442 9 Si 0.757 3.243 10 H -0.182 1.182 11 H -0.198 1.198 12 H -0.203 1.203 13 S 2.611 3.389 14 O -0.980 6.980 15 O -0.969 6.969 16 C -0.947 4.947 17 C -0.012 4.012 18 C -0.190 4.190 19 C 0.374 3.626 20 O -0.395 6.395 21 O -0.277 6.277 22 C -0.056 4.056 23 C -0.329 4.329 24 S 0.563 5.437 25 H 0.212 0.788 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.175 0.825 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.150 1.871 -6.469 8.478 hybrid contribution -2.138 0.452 0.638 2.277 sum -7.288 2.324 -5.831 9.619 Atomic orbital electron populations 1.24184 0.95277 1.06784 1.01589 1.23292 0.94475 0.95097 0.98992 1.18570 0.84025 1.00621 0.86143 1.55851 1.70084 1.17419 1.16817 1.20399 1.29504 0.80519 1.07587 0.85483 1.25742 0.95122 1.00737 0.97082 1.70258 1.20548 1.34789 1.18609 0.85736 0.79544 0.79651 0.79366 1.18153 1.19813 1.20264 1.13313 0.78293 0.74400 0.72856 1.93346 1.85436 1.49209 1.70007 1.93349 1.61950 1.77511 1.64065 1.37545 1.31651 1.10890 1.14646 1.20627 0.88570 0.94686 0.97280 1.19574 0.96798 1.02573 1.00074 1.20536 0.81386 0.81097 0.79575 1.90845 1.78194 1.39215 1.31242 1.86556 1.31266 1.59201 1.50627 1.23232 0.87055 0.92416 1.02923 1.26211 1.04697 0.99939 1.02072 1.82850 1.08889 1.34731 1.17214 0.78783 0.86486 0.89774 0.90932 0.82548 0.91854 0.91934 0.88210 0.80731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.40 19.25 29.55 0.57 -4.84 16 2 C -0.12 -2.56 11.25 -37.13 -0.42 -2.98 16 3 C 0.23 5.03 5.45 -6.83 -0.04 5.00 16 4 N -0.78 -17.85 2.88 -62.78 -0.18 -18.03 16 5 C -0.23 -5.23 9.48 -15.06 -0.14 -5.38 16 6 H 0.13 2.87 7.22 -52.49 -0.38 2.49 16 7 C 0.03 0.61 4.92 -17.43 -0.09 0.52 16 8 N -0.80 -17.98 8.96 55.49 0.50 -17.48 16 9 Si 0.93 17.12 29.62 -169.99 -5.04 12.09 16 10 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 11 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 12 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 13 S 2.52 58.04 5.79 -107.50 -0.62 57.42 16 14 O -0.99 -24.33 16.34 -57.17 -0.93 -25.27 16 15 O -0.98 -24.04 16.65 -57.17 -0.95 -24.99 16 16 C -0.76 -15.78 6.51 28.85 0.19 -15.59 16 17 C 0.02 0.36 9.72 -39.01 -0.38 -0.02 16 18 C -0.17 -3.11 5.98 -104.65 -0.63 -3.74 16 19 C 0.53 9.21 7.92 34.30 0.27 9.48 16 20 O -0.51 -9.88 16.59 -19.31 -0.32 -10.20 16 21 O -0.36 -5.10 10.22 -40.77 -0.42 -5.51 16 22 C 0.04 0.39 10.57 101.05 1.07 1.45 16 23 C -0.19 -2.96 10.56 29.97 0.32 -2.64 16 24 S 0.30 5.10 22.86 -107.50 -2.46 2.64 16 25 H 0.20 3.45 7.80 -54.09 -0.42 3.03 16 26 H 0.12 2.51 6.41 -51.93 -0.33 2.18 16 27 H 0.08 1.73 6.95 -51.93 -0.36 1.37 16 28 H 0.28 5.87 8.31 -40.82 -0.34 5.54 16 29 H 0.16 3.25 8.05 -52.49 -0.42 2.83 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.18 2.12 8.02 -52.49 -0.42 1.70 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -29.39 330.01 -7.46 -36.86 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -2.74 Total: 6.22 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 0.72 Total: -18.72 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.32 Total: -35.51 kcal Atomic # 8 Polarization: -63.35 SS G_CDS: -2.62 Total: -65.97 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.04 Total: 12.09 kcal Atomic # 16 Polarization: 63.14 SS G_CDS: -3.08 Total: 60.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.39 -7.46 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281444402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.171 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds