Wall clock time and date at job start Tue Mar 31 2020 05:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47082 * 74.82074 * 3 2 1 5 5 C 1.36936 * 119.99892 * 273.24945 * 4 3 2 6 6 H 1.07996 * 120.00016 * 186.70401 * 5 4 3 7 7 C 1.38811 * 120.00007 * 6.70549 * 5 4 3 8 8 N 1.31611 * 120.00302 * 25.18904 * 7 5 4 9 9 Si 1.86809 * 119.99829 * 205.19444 * 7 5 4 10 10 H 1.48495 * 109.47072 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47025 * 120.00091 * 9 7 5 12 12 H 1.48503 * 109.46799 * 239.99685 * 9 7 5 13 13 S 1.65602 * 120.00148 * 93.25423 * 4 3 2 14 14 O 1.42098 * 106.40215 * 23.53877 * 13 4 3 15 15 O 1.42098 * 106.40057 * 156.45766 * 13 4 3 16 16 C 1.76200 * 107.21488 * 269.99893 * 13 4 3 17 17 C 1.32738 * 124.70102 * 90.00339 * 16 13 4 18 18 C 1.44467 * 113.08668 * 180.02562 * 17 16 13 19 19 C 1.47038 * 123.47294 * 179.97438 * 18 17 16 20 20 O 1.21555 * 119.99972 * 359.97438 * 19 18 17 21 21 O 1.34803 * 119.99803 * 179.97438 * 19 18 17 22 22 C 1.45198 * 116.99353 * 179.97438 * 21 19 18 23 23 C 1.36105 * 113.05347 * 359.97438 * 18 17 16 24 24 S 1.70451 * 110.80238 * 359.72969 * 23 18 17 25 25 H 4.40632 * 5.51460 * 180.02562 * 4 1 2 26 26 H 1.09006 * 109.47109 * 314.81745 * 3 2 1 27 27 H 1.09000 * 109.47315 * 194.81895 * 3 2 1 28 28 H 0.97002 * 120.00181 * 180.02562 * 8 7 5 29 29 H 1.07995 * 123.45807 * 0.02562 * 17 16 13 30 30 H 1.09004 * 109.47329 * 299.98983 * 22 21 19 31 31 H 1.08995 * 109.47526 * 59.99744 * 22 21 19 32 32 H 1.09003 * 109.46784 * 179.97438 * 22 21 19 33 33 H 1.07997 * 124.59681 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.3608 -1.3330 5 6 3.2998 -1.6783 -1.6676 6 1 3.7607 -1.9429 -2.6078 7 6 2.8752 -2.6737 -0.7983 8 7 1.9121 -2.4274 0.0642 9 14 3.6707 -4.3631 -0.8528 10 1 4.7198 -4.3825 -1.9035 11 1 4.2841 -4.6640 0.4656 12 1 2.6399 -5.3858 -1.1641 13 16 3.4867 0.8239 -2.4352 14 8 3.7567 2.0011 -1.6865 15 8 4.4122 0.2566 -3.3521 16 6 2.0134 1.1418 -3.3479 17 6 1.0954 2.0399 -3.0121 18 6 -0.0119 2.0917 -3.9385 19 6 -1.1551 3.0037 -3.7858 20 8 -1.2018 3.7668 -2.8407 21 8 -2.1514 2.9936 -4.6938 22 6 -3.2483 3.9205 -4.4791 23 6 0.1122 1.2094 -4.9674 24 16 1.5601 0.3204 -4.8311 25 1 -1.0499 0.0001 -0.0002 26 1 3.0096 -0.7236 0.7290 27 1 3.0089 0.9943 0.2628 28 1 1.6156 -3.1229 0.6719 29 1 1.1687 2.6673 -2.1362 30 1 -3.7228 3.7063 -3.5214 31 1 -2.8660 4.9412 -4.4750 32 1 -3.9794 3.8098 -5.2799 33 1 -0.6067 1.0921 -5.7647 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281444402.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:18 Heat of formation + Delta-G solvation = -67.378686 kcal Electronic energy + Delta-G solvation = -23682.437808 eV Core-core repulsion = 19929.234633 eV Total energy + Delta-G solvation = -3753.203175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52114 -38.43565 -38.16698 -37.68804 -37.35086 -36.35614 -33.87302 -32.94507 -31.47736 -28.68962 -28.42182 -26.17093 -25.69600 -23.51903 -20.80762 -20.45146 -19.80241 -19.41427 -18.71630 -18.48058 -18.15259 -17.46263 -17.41328 -16.62234 -16.44751 -16.15321 -15.28836 -15.16234 -14.84528 -14.71486 -14.26960 -14.12952 -13.97751 -13.81314 -13.60285 -13.12240 -13.06842 -12.70802 -12.67793 -12.57529 -12.40732 -12.30133 -12.11102 -11.91462 -11.88534 -11.58402 -11.43580 -11.01986 -10.67045 -10.35988 -10.15632 -9.60344 -8.45269 -5.85633 -0.59910 -0.19070 0.41484 0.43799 0.77181 1.52549 1.59286 1.64833 1.72336 1.86605 2.04227 2.32673 2.44356 2.77532 2.84323 3.22100 3.71520 3.82514 3.90255 3.98339 4.17634 4.28110 4.29705 4.50062 4.56745 4.65801 4.71459 4.92489 5.01237 5.17400 5.19201 5.35463 5.44495 6.27578 6.58286 6.65261 7.08425 7.18445 8.44873 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.015847 B = 0.004748 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.442498 B = 5896.183505 C = 6203.846172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.145 4.145 3 C 0.231 3.769 4 N -0.785 5.785 5 C -0.247 4.247 6 H 0.125 0.875 7 C 0.002 3.998 8 N -0.818 5.818 9 Si 0.995 3.005 10 H -0.258 1.258 11 H -0.268 1.268 12 H -0.272 1.272 13 S 2.514 3.486 14 O -1.017 7.017 15 O -1.002 7.002 16 C -0.794 4.794 17 C 0.014 3.986 18 C -0.197 4.197 19 C 0.536 3.464 20 O -0.538 6.538 21 O -0.353 6.353 22 C 0.029 3.971 23 C -0.155 4.155 24 S 0.325 5.675 25 H 0.222 0.778 26 H 0.117 0.883 27 H 0.085 0.915 28 H 0.286 0.714 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 0.740 -7.089 10.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.147 4.147 3 C 0.106 3.894 4 N -0.606 5.606 5 C -0.399 4.399 6 H 0.143 0.857 7 C -0.211 4.211 8 N -0.455 5.455 9 Si 0.816 3.184 10 H -0.181 1.181 11 H -0.193 1.193 12 H -0.198 1.198 13 S 2.614 3.386 14 O -1.007 7.007 15 O -0.992 6.992 16 C -0.987 4.987 17 C -0.017 4.017 18 C -0.214 4.214 19 C 0.380 3.620 20 O -0.430 6.430 21 O -0.269 6.269 22 C -0.064 4.064 23 C -0.295 4.295 24 S 0.592 5.408 25 H 0.239 0.761 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -6.954 0.570 -7.850 10.503 hybrid contribution -1.720 0.869 1.011 2.176 sum -8.674 1.439 -6.839 11.139 Atomic orbital electron populations 1.24878 0.96100 1.05673 1.00445 1.23518 0.94976 0.96156 1.00081 1.18571 0.84364 1.00623 0.85804 1.55925 1.70394 1.17391 1.16842 1.20647 1.30185 0.80872 1.08214 0.85720 1.26478 0.95053 1.03377 0.96233 1.70316 1.20854 1.35853 1.18524 0.84830 0.78625 0.75551 0.79370 1.18124 1.19333 1.19767 1.13517 0.78453 0.73985 0.72672 1.93286 1.86225 1.50441 1.70766 1.93291 1.63405 1.77772 1.64723 1.37164 1.31487 1.12821 1.17205 1.20625 0.89570 0.94187 0.97292 1.19557 0.97020 1.04214 1.00594 1.20415 0.81724 0.80330 0.79512 1.90830 1.78969 1.40503 1.32685 1.86531 1.31256 1.59895 1.49221 1.23639 0.86378 0.91753 1.04657 1.26633 1.04032 0.97264 1.01567 1.82687 1.09312 1.33995 1.14790 0.76100 0.86578 0.89675 0.90343 0.84408 0.91974 0.91855 0.84107 0.76446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.36 19.25 74.32 1.43 -8.93 16 2 C -0.14 -6.44 11.25 31.12 0.35 -6.09 16 3 C 0.23 10.32 5.45 84.57 0.46 10.78 16 4 N -0.79 -36.69 2.88 -352.52 -1.02 -37.71 16 5 C -0.25 -11.35 9.48 84.03 0.80 -10.55 16 6 H 0.13 5.67 7.22 -2.91 -0.02 5.65 16 7 C 0.00 0.09 4.92 84.86 0.42 0.51 16 8 N -0.82 -35.98 8.96 21.65 0.19 -35.78 16 9 Si 0.99 34.01 29.62 68.60 2.03 36.04 16 10 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 11 H -0.27 -8.96 7.11 99.48 0.71 -8.26 16 12 H -0.27 -9.11 7.11 99.48 0.71 -8.40 16 13 S 2.51 119.70 5.79 -56.49 -0.33 119.37 16 14 O -1.02 -52.30 16.34 -128.00 -2.09 -54.39 16 15 O -1.00 -50.45 16.65 -128.00 -2.13 -52.58 16 16 C -0.79 -33.47 6.51 66.65 0.43 -33.04 16 17 C 0.01 0.57 9.72 22.68 0.22 0.80 16 18 C -0.20 -6.89 5.98 -19.88 -0.12 -7.01 16 19 C 0.54 17.91 7.92 70.13 0.56 18.46 16 20 O -0.54 -20.97 16.59 19.66 0.33 -20.64 16 21 O -0.35 -9.02 10.22 -57.15 -0.58 -9.61 16 22 C 0.03 0.51 10.57 113.37 1.20 1.71 16 23 C -0.16 -4.42 10.56 67.32 0.71 -3.71 16 24 S 0.32 10.74 22.86 -56.49 -1.29 9.45 16 25 H 0.22 7.48 7.80 -4.42 -0.03 7.45 16 26 H 0.12 5.10 6.41 -2.38 -0.02 5.09 16 27 H 0.09 3.68 6.95 -2.39 -0.02 3.67 16 28 H 0.29 11.67 8.31 -92.71 -0.77 10.89 16 29 H 0.14 6.06 8.05 -2.91 -0.02 6.04 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.22 4.20 8.02 -2.91 -0.02 4.18 16 Total: -1.00 -63.83 330.01 2.72 -61.10 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 1.16 Total: 21.83 kcal Atomic # 6 Polarization: -43.52 SS G_CDS: 6.46 Total: -37.07 kcal Atomic # 7 Polarization: -72.67 SS G_CDS: -0.82 Total: -73.49 kcal Atomic # 8 Polarization: -132.74 SS G_CDS: -4.48 Total: -137.22 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Atomic # 16 Polarization: 130.43 SS G_CDS: -1.62 Total: 128.82 kcal Total: -63.83 2.72 -61.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281444402.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.278 kcal (2) G-P(sol) polarization free energy of solvation -63.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds