Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45192 * 109.47466 * 2 1 4 4 C 1.34750 * 117.00064 * 179.97438 * 3 2 1 5 5 O 1.21500 * 120.00105 * 0.02562 * 4 3 2 6 6 C 1.47473 * 120.00005 * 179.97438 * 4 3 2 7 7 C 1.39813 * 120.09147 * 0.02562 * 6 4 3 8 8 C 1.37655 * 119.90436 * 180.02562 * 7 6 4 9 9 C 1.39031 * 120.09565 * 359.97438 * 8 7 6 10 10 O 1.35701 * 119.90971 * 179.97438 * 9 8 7 11 11 C 1.42897 * 116.99706 * 0.02562 * 10 9 8 12 12 C 1.38996 * 120.18789 * 359.97438 * 9 8 7 13 13 S 1.76193 * 119.95760 * 179.97438 * 12 9 8 14 14 O 1.42099 * 106.40358 * 182.28910 * 13 12 9 15 15 O 1.42104 * 106.39938 * 49.37253 * 13 12 9 16 16 N 1.65600 * 107.22113 * 295.83231 * 13 12 9 17 17 C 1.36938 * 120.00049 * 295.54756 * 16 13 12 18 18 H 1.07998 * 119.99553 * 5.09415 * 17 16 13 19 19 C 1.38806 * 120.00140 * 185.09862 * 17 16 13 20 20 N 1.31623 * 119.99983 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47312 * 60.00227 * 21 19 17 23 23 H 1.48500 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47212 * 300.00128 * 21 19 17 25 25 C 1.37706 * 120.09002 * 0.27802 * 12 9 8 26 26 H 1.09005 * 109.46796 * 300.00513 * 1 2 3 27 27 H 1.08999 * 109.47070 * 59.99346 * 1 2 3 28 28 H 1.08995 * 109.47702 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46762 * 239.99911 * 2 1 3 30 30 H 1.09007 * 109.47211 * 120.00399 * 2 1 3 31 31 H 1.08002 * 120.04877 * 359.97438 * 7 6 4 32 32 H 1.08000 * 119.95518 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.46971 * 60.00408 * 11 10 9 34 34 H 1.09003 * 109.47334 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47681 * 300.00394 * 11 10 9 36 36 H 0.97003 * 119.99915 * 115.54161 * 16 13 12 37 37 H 0.97003 * 119.99752 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.04644 * 179.70900 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5453 0.0005 5 8 4.0900 0.5818 0.0005 6 6 3.9137 2.9081 0.0000 7 6 3.0638 4.0183 -0.0005 8 6 3.5942 5.2885 -0.0016 9 6 4.9728 5.4684 -0.0015 10 8 5.4915 6.7224 -0.0031 11 6 4.5630 7.8085 -0.0041 12 6 5.8213 4.3675 0.0001 13 16 7.5675 4.6025 -0.0006 14 8 8.1468 3.3061 -0.0531 15 8 7.8469 5.5374 1.0325 16 7 7.9612 5.3487 -1.4256 17 6 7.7594 4.7021 -2.6157 18 1 7.2683 3.7404 -2.6311 19 6 8.1861 5.2827 -3.8021 20 7 8.7852 6.4545 -3.7831 21 14 7.9114 4.4002 -5.4254 22 1 6.4566 4.1874 -5.6332 23 1 8.4551 5.2241 -6.5349 24 1 8.6049 3.0873 -5.3987 25 6 5.2990 3.0933 -0.0042 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9927 3.8794 -0.0010 32 1 2.9384 6.1467 -0.0024 33 1 3.9366 7.7518 0.8861 34 1 5.1080 8.7525 -0.0058 35 1 3.9360 7.7498 -0.8938 36 1 8.3347 6.2439 -1.4172 37 1 9.0837 6.8600 -4.6122 38 1 5.9590 2.2384 -0.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284968565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -167.872151 kcal Electronic energy + Delta-G solvation = -26356.406817 eV Core-core repulsion = 22291.926142 eV Total energy + Delta-G solvation = -4064.480676 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.61699 -39.84021 -37.43514 -36.41281 -35.97894 -34.70953 -34.54135 -32.11536 -31.27162 -30.87787 -30.37574 -27.52070 -24.48940 -24.38390 -23.26202 -22.55618 -20.97201 -19.02225 -18.18173 -17.94647 -17.73886 -17.01786 -16.60500 -16.41062 -15.97322 -15.68084 -15.43470 -14.56858 -14.32064 -14.29934 -14.26857 -13.85641 -13.77720 -13.33969 -13.01069 -12.80144 -12.71972 -12.10363 -11.99396 -11.91575 -11.76680 -11.46854 -11.24600 -11.09798 -11.01910 -10.99925 -10.87277 -10.65547 -10.54810 -10.53858 -10.27315 -10.02702 -9.85161 -9.27013 -8.38579 -8.20480 -6.38431 -3.84725 0.77158 1.13724 1.58735 2.53041 2.58788 3.20983 3.22634 3.25724 3.30215 3.65407 4.10019 4.46957 4.60676 4.66430 4.72010 4.77721 4.78963 4.84642 5.06196 5.06999 5.16435 5.18963 5.20822 5.35883 5.52678 5.53486 5.62431 5.67119 5.70841 5.79740 6.05588 6.14712 6.21964 6.38943 6.63532 7.08336 7.23730 7.56660 7.78384 8.73961 8.87745 9.30177 10.77850 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004527 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.359679 B = 6183.654745 C = 7023.565590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.516 3.484 5 O -0.507 6.507 6 C -0.197 4.197 7 C 0.014 3.986 8 C -0.246 4.246 9 C 0.263 3.737 10 O -0.291 6.291 11 C 0.025 3.975 12 C -0.705 4.705 13 S 2.638 3.362 14 O -0.968 6.968 15 O -0.987 6.987 16 N -0.944 5.944 17 C -0.284 4.284 18 H 0.100 0.900 19 C 0.034 3.966 20 N -0.884 5.884 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.078 3.922 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.411 0.589 37 H 0.272 0.728 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.718 -2.259 5.475 17.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.362 3.638 5 O -0.396 6.396 6 C -0.199 4.199 7 C -0.004 4.004 8 C -0.266 4.266 9 C 0.213 3.787 10 O -0.202 6.202 11 C -0.070 4.070 12 C -0.784 4.784 13 S 2.724 3.276 14 O -0.958 6.958 15 O -0.976 6.976 16 N -0.698 5.698 17 C -0.421 4.421 18 H 0.118 0.882 19 C -0.173 4.173 20 N -0.525 5.525 21 Si 0.746 3.254 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.059 3.941 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.247 0.753 37 H 0.082 0.918 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.849 -2.811 6.146 17.230 hybrid contribution -1.158 0.072 -1.254 1.709 sum -17.008 -2.739 4.892 17.908 Atomic orbital electron populations 1.21802 0.92677 1.02915 1.03473 1.23015 0.95182 0.80207 1.02795 1.86521 1.24085 1.32284 1.84714 1.21001 0.80350 0.89785 0.72657 1.90855 1.60213 1.42342 1.46155 1.19001 0.94077 0.89963 1.16907 1.21291 0.99859 0.90923 0.88364 1.21246 0.93837 0.98650 1.12827 1.18683 0.91369 0.84119 0.84500 1.86210 1.36205 1.12147 1.85589 1.23218 0.93923 0.88411 1.01439 1.31355 1.31225 0.95523 1.20290 1.05088 0.74873 0.73835 0.73816 1.93496 1.74790 1.40298 1.87265 1.93455 1.84490 1.62820 1.56838 1.51527 1.68489 1.29921 1.19873 1.19189 1.37376 1.01686 0.83892 0.88204 1.25129 0.97121 0.95994 0.99047 1.69695 1.38259 1.15889 1.28698 0.86109 0.78745 0.79442 0.81124 1.19997 1.20775 1.19522 1.20927 0.93506 0.96033 0.83664 0.91530 0.91457 0.90264 0.91092 0.91170 0.84132 0.84210 0.92268 0.87403 0.92002 0.75325 0.91767 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.29 37.16 0.38 -0.67 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.36 -4.66 9.46 -40.63 -0.38 -5.04 16 4 C 0.52 8.26 7.89 34.49 0.27 8.53 16 5 O -0.51 -9.36 16.13 -19.27 -0.31 -9.67 16 6 C -0.20 -3.23 5.87 -104.97 -0.62 -3.85 16 7 C 0.01 0.19 9.61 -39.21 -0.38 -0.18 16 8 C -0.25 -3.44 9.01 -39.50 -0.36 -3.79 16 9 C 0.26 4.66 6.65 -39.01 -0.26 4.40 16 10 O -0.29 -5.09 9.29 -27.72 -0.26 -5.35 16 11 C 0.02 0.28 9.81 101.05 0.99 1.28 16 12 C -0.70 -14.13 5.82 -39.49 -0.23 -14.36 16 13 S 2.64 60.72 5.26 -107.50 -0.57 60.16 16 14 O -0.97 -24.23 16.67 -57.17 -0.95 -25.19 16 15 O -0.99 -23.85 17.34 -62.26 -1.08 -24.93 16 16 N -0.94 -23.27 5.74 31.49 0.18 -23.09 16 17 C -0.28 -7.33 9.63 -15.06 -0.15 -7.48 16 18 H 0.10 2.49 7.82 -52.49 -0.41 2.08 16 19 C 0.03 0.87 5.50 -17.43 -0.10 0.77 16 20 N -0.88 -23.66 13.06 55.49 0.72 -22.93 16 21 Si 0.92 20.14 29.55 -169.99 -5.02 15.12 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.08 1.47 9.08 -39.20 -0.36 1.12 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.14 1.45 7.60 -52.49 -0.40 1.05 16 32 H 0.14 1.43 6.28 -52.49 -0.33 1.10 16 33 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 34 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 36 H 0.41 10.27 8.04 -34.47 -0.28 9.99 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.16 3.09 6.91 -52.49 -0.36 2.73 16 LS Contribution 348.29 15.07 5.25 5.25 Total: -1.00 -33.39 348.29 -7.22 -40.62 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.24 Total: 8.44 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -0.56 Total: -13.37 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.91 Total: -46.02 kcal Atomic # 8 Polarization: -67.20 SS G_CDS: -2.99 Total: -70.18 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 60.72 SS G_CDS: -0.57 Total: 60.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.39 -7.22 -40.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284968565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.257 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds