Wall clock time and date at job start Tue Mar 31 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45192 * 109.47466 * 2 1 4 4 C 1.34750 * 117.00064 * 179.97438 * 3 2 1 5 5 O 1.21500 * 120.00105 * 0.02562 * 4 3 2 6 6 C 1.47473 * 120.00005 * 179.97438 * 4 3 2 7 7 C 1.39813 * 120.09147 * 0.02562 * 6 4 3 8 8 C 1.37655 * 119.90436 * 180.02562 * 7 6 4 9 9 C 1.39031 * 120.09565 * 359.97438 * 8 7 6 10 10 O 1.35701 * 119.90971 * 179.97438 * 9 8 7 11 11 C 1.42897 * 116.99706 * 0.02562 * 10 9 8 12 12 C 1.38996 * 120.18789 * 359.97438 * 9 8 7 13 13 S 1.76193 * 119.95760 * 179.97438 * 12 9 8 14 14 O 1.42099 * 106.40358 * 182.28910 * 13 12 9 15 15 O 1.42104 * 106.39938 * 49.37253 * 13 12 9 16 16 N 1.65600 * 107.22113 * 295.83231 * 13 12 9 17 17 C 1.36938 * 120.00049 * 295.54756 * 16 13 12 18 18 H 1.07998 * 119.99553 * 5.09415 * 17 16 13 19 19 C 1.38806 * 120.00140 * 185.09862 * 17 16 13 20 20 N 1.31623 * 119.99983 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47312 * 60.00227 * 21 19 17 23 23 H 1.48500 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47212 * 300.00128 * 21 19 17 25 25 C 1.37706 * 120.09002 * 0.27802 * 12 9 8 26 26 H 1.09005 * 109.46796 * 300.00513 * 1 2 3 27 27 H 1.08999 * 109.47070 * 59.99346 * 1 2 3 28 28 H 1.08995 * 109.47702 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46762 * 239.99911 * 2 1 3 30 30 H 1.09007 * 109.47211 * 120.00399 * 2 1 3 31 31 H 1.08002 * 120.04877 * 359.97438 * 7 6 4 32 32 H 1.08000 * 119.95518 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.46971 * 60.00408 * 11 10 9 34 34 H 1.09003 * 109.47334 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47681 * 300.00394 * 11 10 9 36 36 H 0.97003 * 119.99915 * 115.54161 * 16 13 12 37 37 H 0.97003 * 119.99752 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.04644 * 179.70900 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5453 0.0005 5 8 4.0900 0.5818 0.0005 6 6 3.9137 2.9081 0.0000 7 6 3.0638 4.0183 -0.0005 8 6 3.5942 5.2885 -0.0016 9 6 4.9728 5.4684 -0.0015 10 8 5.4915 6.7224 -0.0031 11 6 4.5630 7.8085 -0.0041 12 6 5.8213 4.3675 0.0001 13 16 7.5675 4.6025 -0.0006 14 8 8.1468 3.3061 -0.0531 15 8 7.8469 5.5374 1.0325 16 7 7.9612 5.3487 -1.4256 17 6 7.7594 4.7021 -2.6157 18 1 7.2683 3.7404 -2.6311 19 6 8.1861 5.2827 -3.8021 20 7 8.7852 6.4545 -3.7831 21 14 7.9114 4.4002 -5.4254 22 1 6.4566 4.1874 -5.6332 23 1 8.4551 5.2241 -6.5349 24 1 8.6049 3.0873 -5.3987 25 6 5.2990 3.0933 -0.0042 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9927 3.8794 -0.0010 32 1 2.9384 6.1467 -0.0024 33 1 3.9366 7.7518 0.8861 34 1 5.1080 8.7525 -0.0058 35 1 3.9360 7.7498 -0.8938 36 1 8.3347 6.2439 -1.4172 37 1 9.0837 6.8600 -4.6122 38 1 5.9590 2.2384 -0.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284968565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:10 Heat of formation + Delta-G solvation = -192.286461 kcal Electronic energy + Delta-G solvation = -26357.465501 eV Core-core repulsion = 22291.926142 eV Total energy + Delta-G solvation = -4065.539359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.84156 -41.05395 -38.69099 -37.95040 -37.59629 -36.72437 -36.42091 -33.09485 -32.78150 -32.43117 -31.56103 -28.51757 -26.39242 -25.49059 -24.55604 -23.53167 -22.18955 -20.56811 -20.03108 -19.55919 -19.02651 -18.47391 -18.00116 -17.63513 -17.28671 -16.97173 -16.84273 -16.43318 -16.06120 -15.60855 -15.33571 -15.21444 -14.90487 -14.88660 -13.95000 -13.90709 -13.76651 -13.60030 -13.21096 -13.09263 -12.98557 -12.96695 -12.94785 -12.85811 -12.74003 -12.50203 -12.34612 -12.16711 -12.05024 -11.86276 -11.78853 -11.55135 -11.49696 -10.62092 -10.13459 -9.66099 -8.26706 -5.85934 -0.51172 -0.32205 -0.14783 1.27434 1.45867 1.50088 1.50556 1.56610 2.05876 2.26718 2.39402 2.66462 2.89511 3.24220 3.44103 3.52977 3.67471 3.79330 4.01852 4.08434 4.12169 4.25223 4.30565 4.35633 4.41094 4.47720 4.63457 4.73933 4.85674 4.92613 4.94973 4.98467 5.10473 5.11908 5.36414 5.37643 5.66571 6.07988 6.59722 6.79857 6.99555 7.37492 8.91825 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.004527 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.359679 B = 6183.654745 C = 7023.565590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.521 3.479 5 O -0.541 6.541 6 C -0.204 4.204 7 C 0.039 3.961 8 C -0.229 4.229 9 C 0.254 3.746 10 O -0.324 6.324 11 C 0.008 3.992 12 C -0.728 4.728 13 S 2.685 3.315 14 O -0.999 6.999 15 O -0.998 6.998 16 N -0.969 5.969 17 C -0.317 4.317 18 H 0.097 0.903 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.975 3.025 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.273 1.273 25 C 0.062 3.938 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.407 0.593 37 H 0.271 0.729 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.110 -2.097 6.024 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.367 3.633 5 O -0.433 6.433 6 C -0.206 4.206 7 C 0.021 3.979 8 C -0.248 4.248 9 C 0.204 3.796 10 O -0.235 6.235 11 C -0.085 4.085 12 C -0.815 4.815 13 S 2.775 3.225 14 O -0.990 6.990 15 O -0.988 6.988 16 N -0.723 5.723 17 C -0.449 4.449 18 H 0.115 0.885 19 C -0.213 4.213 20 N -0.571 5.571 21 Si 0.799 3.201 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.198 1.198 25 C 0.042 3.958 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.205 0.795 32 H 0.207 0.793 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.100 0.900 36 H 0.242 0.758 37 H 0.080 0.920 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -20.186 -2.625 6.610 21.403 hybrid contribution -0.045 -0.055 -1.077 1.080 sum -20.231 -2.680 5.533 21.144 Atomic orbital electron populations 1.21822 0.89671 1.04519 1.04012 1.23390 0.97418 0.78729 1.02694 1.86505 1.21910 1.34097 1.83893 1.20954 0.81220 0.89179 0.71906 1.90845 1.61278 1.43344 1.47802 1.19084 0.93145 0.91489 1.16898 1.21814 1.01634 0.89552 0.84902 1.21731 0.92313 1.00492 1.10237 1.18901 0.92804 0.83715 0.84219 1.86178 1.39036 1.12984 1.85282 1.23688 0.94070 0.86875 1.03890 1.30353 1.27975 0.97621 1.25507 1.01990 0.75214 0.72654 0.72608 1.93469 1.76303 1.41787 1.87432 1.93451 1.85306 1.63361 1.56676 1.51040 1.73135 1.28834 1.19293 1.19266 1.38460 1.02778 0.84446 0.88510 1.25826 0.96947 0.96760 1.01752 1.69792 1.40937 1.17326 1.29089 0.85260 0.79019 0.78100 0.77690 1.18886 1.20267 1.19839 1.20800 0.95142 0.94939 0.84925 0.90810 0.91023 0.88159 0.91501 0.91197 0.79547 0.79318 0.89127 0.86436 0.90011 0.75811 0.91991 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.91 6.19 71.98 0.45 1.36 16 3 O -0.35 -7.95 9.46 -56.61 -0.54 -8.49 16 4 C 0.52 15.78 7.89 70.26 0.55 16.33 16 5 O -0.54 -19.95 16.13 19.84 0.32 -19.63 16 6 C -0.20 -6.25 5.87 -20.09 -0.12 -6.37 16 7 C 0.04 0.87 9.61 22.51 0.22 1.08 16 8 C -0.23 -5.27 9.01 22.32 0.20 -5.07 16 9 C 0.25 8.47 6.65 22.64 0.15 8.63 16 10 O -0.32 -10.80 9.29 -81.69 -0.76 -11.56 16 11 C 0.01 0.15 9.81 113.37 1.11 1.26 16 12 C -0.73 -29.15 5.82 22.33 0.13 -29.02 16 13 S 2.69 127.80 5.26 -56.49 -0.30 127.50 16 14 O -1.00 -52.31 16.67 -128.00 -2.13 -54.45 16 15 O -1.00 -49.21 17.34 -123.13 -2.13 -51.34 16 16 N -0.97 -49.95 5.74 -54.27 -0.31 -50.27 16 17 C -0.32 -17.10 9.63 84.03 0.81 -16.29 16 18 H 0.10 5.08 7.82 -2.91 -0.02 5.06 16 19 C -0.01 -0.63 5.50 84.86 0.47 -0.17 16 20 N -0.93 -51.90 13.06 21.65 0.28 -51.62 16 21 Si 0.98 42.41 29.55 68.60 2.03 44.43 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.06 2.34 9.08 22.52 0.20 2.54 16 26 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.19 2.53 7.60 -2.91 -0.02 2.51 16 32 H 0.19 2.50 6.28 -2.91 -0.02 2.48 16 33 H 0.09 1.20 7.65 -2.39 -0.02 1.18 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.28 7.65 -2.39 -0.02 1.26 16 36 H 0.41 21.48 8.04 -96.74 -0.78 20.71 16 37 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.14 5.74 6.91 -2.91 -0.02 5.72 16 Total: -1.00 -76.91 348.29 1.71 -75.20 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.34 Total: 26.63 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 4.91 Total: -26.43 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -0.03 Total: -101.88 kcal Atomic # 8 Polarization: -140.22 SS G_CDS: -5.24 Total: -145.46 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 127.80 SS G_CDS: -0.30 Total: 127.50 kcal Total: -76.91 1.71 -75.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284968565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.084 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds