Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00562 * 2 1 4 4 C 1.50695 * 109.47497 * 180.02562 * 3 2 1 5 5 C 1.37969 * 119.92341 * 270.02259 * 4 3 2 6 6 C 1.39605 * 119.84728 * 179.97438 * 5 4 3 7 7 C 1.47730 * 120.15326 * 179.97438 * 6 5 4 8 8 O 1.21465 * 120.00071 * 179.97438 * 7 6 5 9 9 O 1.34713 * 119.99322 * 0.02562 * 7 6 5 10 10 C 1.45200 * 116.99622 * 179.97438 * 9 7 6 11 11 C 1.39651 * 119.70238 * 359.77066 * 6 5 4 12 12 C 1.37922 * 119.84332 * 0.48455 * 11 6 5 13 13 S 1.76199 * 119.92383 * 179.77153 * 12 11 6 14 14 O 1.42106 * 106.40481 * 23.26322 * 13 12 11 15 15 O 1.42100 * 106.40287 * 156.17956 * 13 12 11 16 16 N 1.65599 * 107.21905 * 269.72150 * 13 12 11 17 17 C 1.36930 * 120.00052 * 64.99938 * 16 13 12 18 18 H 1.07997 * 120.00144 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00086 * 180.02562 * 17 16 13 20 20 N 1.31617 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99900 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46891 * 90.00183 * 21 19 17 23 23 H 1.48502 * 109.46679 * 209.99729 * 21 19 17 24 24 H 1.48499 * 109.47017 * 329.99822 * 21 19 17 25 25 C 1.38343 * 119.92871 * 90.00321 * 4 3 2 26 26 H 1.08999 * 109.47140 * 299.99887 * 1 2 3 27 27 H 1.08999 * 109.47015 * 59.99839 * 1 2 3 28 28 H 1.09001 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46659 * 59.99956 * 3 2 1 30 30 H 1.09003 * 109.46782 * 300.00585 * 3 2 1 31 31 H 1.08001 * 120.07599 * 359.95544 * 5 4 3 32 32 H 1.08998 * 109.47395 * 299.99980 * 10 9 7 33 33 H 1.09001 * 109.47302 * 60.00173 * 10 9 7 34 34 H 1.08999 * 109.47294 * 179.97438 * 10 9 7 35 35 H 1.07997 * 120.08034 * 180.24946 * 11 6 5 36 36 H 0.97005 * 120.00149 * 245.00298 * 16 13 12 37 37 H 0.96999 * 119.99863 * 180.02562 * 20 19 17 38 38 H 1.07999 * 119.84372 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1991 1.1313 1.1948 6 6 5.5908 1.0205 1.1924 7 6 6.3327 0.9616 2.4685 8 8 7.5435 0.8647 2.4631 9 8 5.6663 1.0143 3.6380 10 6 6.4599 0.9507 4.8523 11 6 6.2781 0.9613 -0.0218 12 6 5.5796 1.0226 -1.2095 13 16 6.4452 0.9542 -2.7428 14 8 7.6834 0.3098 -2.4762 15 8 5.5152 0.4819 -3.7078 16 7 6.8111 2.5120 -3.1691 17 6 7.6712 3.2485 -2.3992 18 1 8.1113 2.8134 -1.5142 19 6 7.9774 4.5545 -2.7563 20 7 7.4407 5.0850 -3.8347 21 14 9.1503 5.5595 -1.7056 22 1 10.5403 5.3641 -2.1902 23 1 8.7908 6.9973 -1.7997 24 1 9.0520 5.1161 -0.2917 25 6 4.2002 1.1321 -1.1999 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6887 1.8463 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.6612 1.1741 2.1304 32 1 7.0162 0.0136 4.8742 33 1 7.1575 1.7879 4.8748 34 1 5.8018 1.0033 5.7196 35 1 7.3543 0.8715 -0.0308 36 1 6.4160 2.9027 -3.9643 37 1 7.6550 5.9974 -4.0844 38 1 3.6578 1.1757 -2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291816718.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = -174.536650 kcal Electronic energy + Delta-G solvation = -26026.055660 eV Core-core repulsion = 21961.285990 eV Total energy + Delta-G solvation = -4064.769670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.54301 -39.11477 -37.57649 -36.39724 -36.12425 -34.75620 -34.71005 -32.17861 -31.55688 -31.03548 -27.83947 -27.42482 -25.42464 -24.60273 -24.14265 -22.48830 -20.52362 -18.69402 -18.25488 -17.78856 -17.15941 -16.60182 -16.46473 -16.34909 -16.14027 -15.93729 -15.55334 -15.05581 -14.98710 -14.55717 -14.21687 -13.72819 -13.51847 -13.44368 -12.79113 -12.55247 -12.47008 -12.24093 -12.08372 -11.96909 -11.64630 -11.41291 -11.35057 -11.14228 -11.04910 -10.91994 -10.87241 -10.61090 -10.55699 -10.38448 -10.09370 -9.98925 -9.82626 -9.17656 -8.90997 -8.35935 -6.56682 -3.97521 0.71366 1.09872 1.50148 2.47595 2.63149 3.16193 3.21034 3.24365 3.46610 3.95030 4.03625 4.40406 4.58881 4.68649 4.73757 4.94833 4.98875 5.03801 5.07064 5.07644 5.10962 5.17804 5.21092 5.32073 5.36330 5.41495 5.48501 5.57825 5.73758 5.96297 6.19374 6.24534 6.35118 6.40993 6.82056 6.96211 6.97394 7.39486 7.73725 8.58021 8.69504 9.13701 10.58422 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.008856 B = 0.005175 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.840433 B = 5409.511536 C = 7109.411833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.106 3.894 4 C -0.134 4.134 5 C -0.006 4.006 6 C -0.156 4.156 7 C 0.512 3.488 8 O -0.499 6.499 9 O -0.358 6.358 10 C 0.037 3.963 11 C 0.052 3.948 12 C -0.671 4.671 13 S 2.604 3.396 14 O -0.966 6.966 15 O -0.999 6.999 16 N -0.941 5.941 17 C -0.272 4.272 18 H 0.106 0.894 19 C 0.034 3.966 20 N -0.871 5.871 21 Si 0.922 3.078 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.267 1.267 25 C 0.033 3.967 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.153 0.847 36 H 0.411 0.589 37 H 0.276 0.724 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 -3.603 12.282 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.030 3.970 4 C -0.135 4.135 5 C -0.025 4.025 6 C -0.158 4.158 7 C 0.357 3.643 8 O -0.387 6.387 9 O -0.275 6.275 10 C -0.057 4.057 11 C 0.033 3.967 12 C -0.749 4.749 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.987 6.987 16 N -0.693 5.693 17 C -0.413 4.413 18 H 0.123 0.877 19 C -0.175 4.175 20 N -0.513 5.513 21 Si 0.748 3.252 22 H -0.198 1.198 23 H -0.206 1.206 24 H -0.191 1.191 25 C 0.014 3.986 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.157 0.843 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.171 0.829 36 H 0.247 0.753 37 H 0.086 0.914 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.242 -4.642 11.982 16.432 hybrid contribution -0.129 1.395 1.031 1.739 sum -10.372 -3.247 13.013 16.954 Atomic orbital electron populations 1.22758 0.81014 1.02826 1.00018 1.87991 1.19590 1.27488 1.95418 1.21314 0.89147 0.85120 1.01414 1.19590 0.94458 1.06030 0.93383 1.21394 0.92599 0.90249 0.98255 1.19125 0.93746 1.12489 0.90469 1.21150 0.86100 0.72852 0.84216 1.90859 1.14749 1.45264 1.87865 1.86527 1.41534 1.84403 1.15045 1.23265 0.96372 1.02726 0.83331 1.21097 1.00998 0.85386 0.89213 1.32345 1.05880 1.13204 1.23423 1.07095 0.73795 0.75905 0.73898 1.93490 1.41954 1.74644 1.85510 1.93418 1.64106 1.81246 1.59973 1.51876 1.50522 1.35433 1.31482 1.19402 1.16841 0.95815 1.09233 0.87655 1.25274 0.98734 0.96607 0.96884 1.69690 1.42417 1.15912 1.23240 0.85983 0.80298 0.78748 0.80170 1.19826 1.20615 1.19100 1.21059 0.92513 0.86722 0.98309 0.94097 0.93861 0.89589 0.92091 0.91736 0.84339 0.91801 0.91731 0.88111 0.82943 0.75270 0.91383 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.93 10.69 -35.23 -0.38 -5.31 16 3 C 0.11 1.26 6.06 36.00 0.22 1.48 16 4 C -0.13 -2.00 5.50 -104.68 -0.58 -2.57 16 5 C -0.01 -0.09 9.27 -39.17 -0.36 -0.46 16 6 C -0.16 -2.65 5.87 -104.98 -0.62 -3.27 16 7 C 0.51 8.41 7.90 34.61 0.27 8.69 16 8 O -0.50 -9.42 16.14 -19.24 -0.31 -9.73 16 9 O -0.36 -4.76 9.82 -40.53 -0.40 -5.16 16 10 C 0.04 0.36 10.56 101.05 1.07 1.43 16 11 C 0.05 1.00 9.07 -39.17 -0.36 0.65 16 12 C -0.67 -13.05 5.88 -39.64 -0.23 -13.29 16 13 S 2.60 57.27 5.70 -107.50 -0.61 56.66 16 14 O -0.97 -23.59 16.97 -57.17 -0.97 -24.56 16 15 O -1.00 -22.97 17.27 -57.17 -0.99 -23.95 16 16 N -0.94 -22.12 5.75 31.50 0.18 -21.93 16 17 C -0.27 -6.73 9.63 -15.06 -0.15 -6.88 16 18 H 0.11 2.52 7.82 -52.49 -0.41 2.11 16 19 C 0.03 0.83 5.50 -17.43 -0.10 0.74 16 20 N -0.87 -22.39 13.06 55.49 0.72 -21.66 16 21 Si 0.92 19.49 29.55 -169.99 -5.02 14.46 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 25 C 0.03 0.57 9.17 -39.49 -0.36 0.21 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.14 1.63 7.61 -52.49 -0.40 1.23 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.15 3.03 7.20 -52.49 -0.38 2.65 16 36 H 0.41 9.70 8.02 -34.47 -0.28 9.43 16 37 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.14 2.28 7.61 -52.49 -0.40 1.88 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -32.17 353.26 -6.90 -39.07 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.37 Total: 8.70 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.08 Total: -11.91 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.91 Total: -43.60 kcal Atomic # 8 Polarization: -65.67 SS G_CDS: -3.04 Total: -68.72 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Atomic # 16 Polarization: 57.27 SS G_CDS: -0.61 Total: 56.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.17 -6.90 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291816718.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.467 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds