Wall clock time and date at job start Tue Mar 31 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47084 * 178.16390 * 3 2 1 5 5 C 1.37101 * 120.00065 * 264.23229 * 4 3 2 6 6 H 1.07994 * 119.99864 * 197.71746 * 5 4 3 7 7 C 1.38954 * 119.99544 * 17.72036 * 5 4 3 8 8 N 1.31414 * 120.00377 * 21.39958 * 7 5 4 9 9 Si 1.86804 * 119.99541 * 201.39647 * 7 5 4 10 10 H 1.48500 * 109.46846 * 90.00437 * 9 7 5 11 11 H 1.48497 * 109.46813 * 209.99760 * 9 7 5 12 12 H 1.48497 * 109.47458 * 330.00105 * 9 7 5 13 13 C 1.34777 * 120.00167 * 84.22793 * 4 3 2 14 14 O 1.21298 * 120.00035 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00088 * 0.02562 * 13 4 3 16 16 N 1.46496 * 109.47235 * 179.97438 * 15 13 4 17 17 S 1.65599 * 119.99842 * 164.99844 * 16 15 13 18 18 O 1.42101 * 106.40338 * 178.54289 * 17 16 15 19 19 O 1.42103 * 106.40529 * 311.46019 * 17 16 15 20 20 C 1.76203 * 107.21880 * 65.00389 * 17 16 15 21 21 C 1.33391 * 125.20412 * 89.99777 * 20 17 16 22 22 C 1.38416 * 114.91815 * 179.97438 * 21 20 17 23 23 C 1.33390 * 114.92367 * 0.02562 * 22 21 20 24 24 S 1.75879 * 109.59481 * 359.75630 * 23 22 21 25 25 H 1.09001 * 109.47554 * 58.16336 * 3 2 1 26 26 H 1.09008 * 109.47499 * 298.15879 * 3 2 1 27 27 H 0.96997 * 119.99839 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.46760 * 59.99773 * 15 13 4 29 29 H 1.09002 * 109.47135 * 300.00301 * 15 13 4 30 30 H 0.97001 * 120.00217 * 345.00135 * 16 15 13 31 31 H 1.08000 * 122.53957 * 359.95859 * 21 20 17 32 32 H 1.08005 * 122.53799 * 180.02562 * 22 21 20 33 33 H 1.08008 * 125.20079 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3814 -0.0443 5 6 3.4364 1.9499 -1.2444 6 1 4.0523 2.8368 -1.2662 7 6 2.9893 1.3850 -2.4325 8 7 1.9363 0.5988 -2.4310 9 14 3.8850 1.7433 -4.0322 10 1 4.9502 0.7298 -4.2407 11 1 2.9222 1.6889 -5.1615 12 1 4.4946 3.0958 -3.9661 13 6 3.2093 2.0928 1.0948 14 8 3.6136 3.2359 1.0582 15 6 2.8353 1.4678 2.4141 16 7 3.0470 2.4376 3.4914 17 16 2.3829 2.1738 4.9853 18 8 2.7936 3.2599 5.8045 19 8 1.0197 1.8387 4.7650 20 6 3.1486 0.7325 5.6494 21 6 4.2563 0.7232 6.3925 22 6 4.6725 -0.5313 6.8034 23 6 3.9030 -1.5409 6.3937 24 16 2.5655 -0.9136 5.4393 25 1 2.9716 -0.5413 -0.8730 26 1 2.9716 -0.4842 0.9061 27 1 1.6244 0.2042 -3.2603 28 1 3.4565 0.5894 2.5891 29 1 1.7863 1.1723 2.3917 30 1 3.5762 3.2343 3.3298 31 1 4.7883 1.6262 6.6535 32 1 5.5534 -0.6813 7.4100 33 1 4.0728 -2.5838 6.6177 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299724703.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:44 Heat of formation + Delta-G solvation = -24.780202 kcal Electronic energy + Delta-G solvation = -23306.333786 eV Core-core repulsion = 19587.270570 eV Total energy + Delta-G solvation = -3719.063215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.034 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.10265 -38.07470 -37.13409 -36.05200 -35.84979 -34.73209 -34.06428 -31.98260 -30.12707 -27.79761 -27.09118 -24.67444 -24.33261 -20.62896 -19.72411 -19.32256 -18.70437 -18.09288 -17.59782 -16.54423 -16.30442 -16.00901 -15.83053 -15.22535 -14.73607 -14.57006 -14.40111 -13.87272 -13.48352 -13.20088 -13.10888 -12.88964 -12.75656 -12.50379 -12.08941 -12.03230 -11.99026 -11.96459 -11.67917 -11.57179 -11.33578 -11.22900 -11.05946 -10.66179 -10.47007 -10.43709 -9.65019 -9.51188 -9.38118 -8.86022 -8.77758 -8.18560 -6.60946 -4.11406 0.15299 0.44532 1.21035 1.55916 2.21580 3.01754 3.02754 3.17692 3.21741 3.40352 3.67036 3.71617 3.91108 4.03767 4.46419 4.60388 4.63952 4.79174 4.99686 5.08019 5.10607 5.20239 5.40178 5.53542 5.64576 5.70333 5.78970 5.98494 6.00572 6.39211 7.14191 7.37784 7.74867 8.14162 8.67480 8.85432 9.05217 9.54453 10.44851 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.018095 B = 0.003774 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.015433 B = 7417.417269 C = 7754.585963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.238 3.762 3 C 0.217 3.783 4 N -0.435 5.435 5 C -0.316 4.316 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.873 5.873 9 Si 0.930 3.070 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.451 3.549 14 O -0.565 6.565 15 C 0.099 3.901 16 N -1.094 6.094 17 S 2.721 3.279 18 O -0.953 6.953 19 O -0.949 6.949 20 C -0.793 4.793 21 C 0.007 3.993 22 C -0.164 4.164 23 C -0.177 4.177 24 S 0.220 5.780 25 H 0.132 0.868 26 H 0.085 0.915 27 H 0.275 0.725 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.429 0.571 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.351 -8.156 14.628 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.081 4.081 3 C 0.089 3.911 4 N -0.155 5.155 5 C -0.443 4.443 6 H 0.129 0.871 7 C -0.170 4.170 8 N -0.511 5.511 9 Si 0.757 3.243 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.238 3.762 14 O -0.447 6.447 15 C -0.032 4.032 16 N -0.859 5.859 17 S 2.805 3.195 18 O -0.943 6.943 19 O -0.939 6.939 20 C -0.994 4.994 21 C -0.028 4.028 22 C -0.195 4.195 23 C -0.315 4.315 24 S 0.485 5.515 25 H 0.149 0.851 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.114 0.886 30 H 0.269 0.731 31 H 0.173 0.827 32 H 0.167 0.833 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.779 -8.043 14.113 16.678 hybrid contribution 2.597 0.254 -0.300 2.627 sum 6.377 -7.789 13.814 17.092 Atomic orbital electron populations 1.80935 1.13474 1.07894 1.11767 1.29223 0.95311 0.92991 0.90560 1.18817 0.81839 0.86556 1.03874 1.43610 1.55971 1.09600 1.06338 1.19762 1.30263 1.13595 0.80708 0.87082 1.25321 0.94859 0.97009 0.99859 1.69864 1.19563 1.32381 1.29276 0.85849 0.78965 0.79283 0.80230 1.20056 1.21039 1.19265 1.19766 0.84958 0.86698 0.84769 1.90541 1.50533 1.17653 1.85977 1.21144 1.02603 0.91369 0.88061 1.55111 1.71663 1.33790 1.25315 1.01204 0.73552 0.72584 0.72135 1.93591 1.83379 1.50436 1.66905 1.93624 1.30647 1.84572 1.85029 1.36062 1.16915 1.22270 1.24130 1.20067 0.92005 0.99607 0.91141 1.20429 1.02802 0.91550 1.04756 1.26287 0.98874 1.03953 1.02398 1.84419 1.24387 0.93931 1.48734 0.85065 0.89684 0.91396 0.89791 0.88604 0.73141 0.82699 0.83345 0.80957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.73 18.54 42.15 0.78 -9.95 16 2 C 0.24 5.04 12.95 -20.76 -0.27 4.77 16 3 C 0.22 3.97 4.91 -6.83 -0.03 3.94 16 4 N -0.43 -9.50 2.60 -117.93 -0.31 -9.81 16 5 C -0.32 -7.71 9.32 -14.93 -0.14 -7.85 16 6 H 0.11 2.86 7.39 -52.49 -0.39 2.47 16 7 C 0.03 0.80 4.87 -17.47 -0.08 0.71 16 8 N -0.87 -21.04 9.48 55.50 0.53 -20.52 16 9 Si 0.93 18.77 29.60 -169.99 -5.03 13.74 16 10 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 11 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 C 0.45 9.55 7.63 -10.98 -0.08 9.47 16 14 O -0.56 -13.69 15.38 5.54 0.09 -13.60 16 15 C 0.10 1.61 5.31 -5.20 -0.03 1.58 16 16 N -1.09 -16.83 5.93 -11.66 -0.07 -16.90 16 17 S 2.72 40.04 5.88 -107.50 -0.63 39.40 16 18 O -0.95 -15.48 17.80 -57.17 -1.02 -16.49 16 19 O -0.95 -16.68 17.38 -57.17 -0.99 -17.68 16 20 C -0.79 -9.47 6.55 29.04 0.19 -9.28 16 21 C 0.01 0.07 9.84 -41.21 -0.41 -0.33 16 22 C -0.16 -1.32 10.18 -41.21 -0.42 -1.74 16 23 C -0.18 -1.38 11.23 29.04 0.33 -1.05 16 24 S 0.22 2.30 23.21 -107.50 -2.50 -0.20 16 25 H 0.13 2.44 6.46 -51.93 -0.34 2.10 16 26 H 0.09 1.11 6.68 -51.92 -0.35 0.76 16 27 H 0.28 6.44 8.31 -40.82 -0.34 6.11 16 28 H 0.08 1.04 7.42 -51.93 -0.39 0.65 16 29 H 0.10 1.61 7.12 -51.93 -0.37 1.24 16 30 H 0.43 6.66 7.70 -34.47 -0.27 6.39 16 31 H 0.16 1.31 8.05 -52.49 -0.42 0.89 16 32 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -33.35 325.16 -7.69 -41.05 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -2.49 Total: 5.85 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.95 Total: 0.21 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.93 Total: -57.17 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.93 Total: -47.77 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Atomic # 16 Polarization: 42.33 SS G_CDS: -3.13 Total: 39.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.35 -7.69 -41.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299724703.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.268 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds