Wall clock time and date at job start Tue Mar 31 2020 04:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47060 * 256.47462 * 3 2 1 5 5 C 1.36932 * 120.00255 * 273.32003 * 4 3 2 6 6 H 1.07998 * 120.00074 * 186.85248 * 5 4 3 7 7 C 1.38813 * 120.00053 * 6.84409 * 5 4 3 8 8 N 1.31618 * 119.99868 * 23.65309 * 7 5 4 9 9 Si 1.86801 * 120.00187 * 203.65240 * 7 5 4 10 10 H 1.48500 * 109.46979 * 84.98567 * 9 7 5 11 11 H 1.48499 * 109.46671 * 204.98518 * 9 7 5 12 12 H 1.48496 * 109.46825 * 324.98545 * 9 7 5 13 13 S 1.65602 * 119.99884 * 93.31420 * 4 3 2 14 14 O 1.42111 * 106.40240 * 23.53975 * 13 4 3 15 15 O 1.42097 * 106.40244 * 156.45813 * 13 4 3 16 16 C 1.76200 * 107.21953 * 270.00288 * 13 4 3 17 17 C 1.37414 * 122.44483 * 114.70688 * 16 13 4 18 18 C 1.36755 * 113.28795 * 179.82331 * 17 16 13 19 19 C 1.46388 * 125.46406 * 180.18408 * 18 17 16 20 20 O 1.21631 * 120.00318 * 0.30169 * 19 18 17 21 21 O 1.34899 * 119.99879 * 180.29949 * 19 18 17 22 22 S 1.75838 * 109.07171 * 0.42149 * 18 17 16 23 23 C 1.33856 * 122.44244 * 294.99955 * 16 13 4 24 24 C 1.50699 * 124.52172 * 359.97438 * 23 16 13 25 25 H 4.40641 * 5.51420 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47159 * 136.47919 * 3 2 1 27 27 H 1.09004 * 109.47612 * 16.47292 * 3 2 1 28 28 H 0.96997 * 120.00520 * 179.97438 * 8 7 5 29 29 H 1.08001 * 123.35553 * 0.02562 * 17 16 13 30 30 H 0.96698 * 116.99859 * 179.97438 * 21 19 18 31 31 H 1.08996 * 109.47208 * 89.99920 * 24 23 16 32 32 H 1.08993 * 109.47572 * 210.00204 * 24 23 16 33 33 H 1.09002 * 109.46881 * 330.00172 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.3239 1.3430 5 6 3.2971 1.6313 1.7160 6 1 3.7599 1.8692 2.6623 7 6 2.8675 2.6510 0.8777 8 7 1.9238 2.4194 -0.0100 9 14 3.6288 4.3517 1.0095 10 1 4.8721 4.4017 0.1989 11 1 2.6676 5.3647 0.5046 12 1 3.9520 4.6406 2.4298 13 16 3.4889 -0.8919 2.4099 14 8 3.7610 -2.0462 1.6270 15 8 4.4136 -0.3499 3.3428 16 6 2.0164 -1.2392 3.3132 17 6 1.3596 -2.4424 3.2178 18 6 0.2411 -2.5114 4.0017 19 6 -0.6522 -3.6663 4.1072 20 8 -0.4205 -4.6749 3.4680 21 8 -1.7324 -3.6121 4.9134 22 16 0.0443 -0.9879 4.8574 23 6 1.4530 -0.3482 4.1380 24 6 1.9910 1.0355 4.3968 25 1 -1.0501 0.0002 -0.0002 26 1 3.0090 0.7460 -0.7077 27 1 3.0099 -0.9847 -0.2914 28 1 1.6233 3.1320 -0.5956 29 1 1.6951 -3.2539 2.5891 30 1 -2.2929 -4.3992 4.9499 31 1 1.5576 1.7336 3.6807 32 1 1.7291 1.3438 5.4089 33 1 3.0755 1.0298 4.2879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302330729.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:46 Heat of formation + Delta-G solvation = -57.579739 kcal Electronic energy + Delta-G solvation = -24234.522095 eV Core-core repulsion = 20481.743834 eV Total energy + Delta-G solvation = -3752.778261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 329.027 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97613 -37.60943 -36.45887 -36.07317 -35.91232 -34.55722 -32.12818 -31.86441 -31.18862 -27.60625 -26.65560 -24.06349 -23.62586 -22.70675 -19.46392 -18.58700 -18.47239 -17.82018 -17.02104 -16.98655 -16.63382 -15.91832 -15.59185 -15.12559 -14.70498 -14.45718 -13.76768 -13.75367 -13.45206 -13.28123 -13.01962 -12.56246 -12.42898 -11.99540 -11.85003 -11.80461 -11.49620 -11.29627 -11.17903 -11.05129 -10.87232 -10.77299 -10.57290 -10.56479 -10.35818 -9.98308 -9.70340 -9.30602 -8.94100 -8.58870 -8.41798 -8.39953 -6.71293 -4.10734 0.59799 1.42102 1.75326 2.12883 2.21843 3.00152 3.04440 3.07329 3.07911 3.12007 3.71894 3.90317 4.12629 4.49267 4.57380 4.92993 5.06149 5.31266 5.40395 5.51542 5.67310 5.87918 5.98488 6.07135 6.19602 6.35403 6.44906 6.54080 6.60637 6.67695 6.92031 7.05281 7.15513 7.89594 8.02235 8.43678 8.83804 8.87073 10.19073 Molecular weight = 329.03amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.005146 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.188020 B = 5439.952670 C = 5486.224946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.110 4.110 3 C 0.235 3.765 4 N -0.791 5.791 5 C -0.247 4.247 6 H 0.126 0.874 7 C 0.030 3.970 8 N -0.814 5.814 9 Si 0.929 3.071 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.263 1.263 13 S 2.541 3.459 14 O -0.994 6.994 15 O -0.979 6.979 16 C -0.705 4.705 17 C 0.048 3.952 18 C -0.298 4.298 19 C 0.564 3.436 20 O -0.513 6.513 21 O -0.516 6.516 22 S 0.217 5.783 23 C -0.053 4.053 24 C -0.128 4.128 25 H 0.195 0.805 26 H 0.119 0.881 27 H 0.082 0.918 28 H 0.278 0.722 29 H 0.160 0.840 30 H 0.413 0.587 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -0.527 5.202 7.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 C -0.113 4.113 3 C 0.110 3.890 4 N -0.613 5.613 5 C -0.395 4.395 6 H 0.144 0.856 7 C -0.183 4.183 8 N -0.452 5.452 9 Si 0.754 3.246 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.187 1.187 13 S 2.637 3.363 14 O -0.983 6.983 15 O -0.969 6.969 16 C -0.793 4.793 17 C 0.015 3.985 18 C -0.416 4.416 19 C 0.408 3.592 20 O -0.403 6.403 21 O -0.328 6.328 22 S 0.485 5.515 23 C -0.175 4.175 24 C -0.186 4.186 25 H 0.212 0.788 26 H 0.137 0.863 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.177 0.823 30 H 0.271 0.729 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.289 -0.560 6.189 8.160 hybrid contribution -0.481 -0.246 -0.739 0.916 sum -5.770 -0.806 5.450 7.978 Atomic orbital electron populations 1.24188 0.95300 1.07246 1.01849 1.23345 0.94521 0.94703 0.98703 1.18525 0.83911 1.00841 0.85750 1.55309 1.71566 1.17434 1.17000 1.20206 1.31038 0.80397 1.07858 0.85645 1.25613 0.95133 1.00459 0.97121 1.70220 1.21605 1.34198 1.19222 0.85871 0.79120 0.79873 0.79712 1.19515 1.20706 1.18726 1.11614 0.77956 0.73979 0.72777 1.93346 1.85582 1.50518 1.68894 1.93332 1.61926 1.78322 1.63294 1.31075 1.30487 0.99786 1.17956 1.20399 0.89325 0.96200 0.92563 1.23291 1.04653 0.98954 1.14714 1.19332 0.78461 0.85811 0.75595 1.90932 1.72966 1.32270 1.44156 1.84609 1.37720 1.47204 1.63251 1.82788 1.22844 1.04186 1.41682 1.24221 0.97036 1.00328 0.95910 1.21272 1.05158 0.89506 1.02704 0.78800 0.86333 0.90024 0.91080 0.82286 0.72900 0.87505 0.91056 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.44 19.25 29.55 0.57 -4.87 16 2 C -0.11 -2.38 11.26 -37.12 -0.42 -2.80 16 3 C 0.23 5.01 5.45 -6.83 -0.04 4.97 16 4 N -0.79 -17.37 2.88 -62.77 -0.18 -17.55 16 5 C -0.25 -5.33 7.43 -15.06 -0.11 -5.45 16 6 H 0.13 2.63 5.73 -52.49 -0.30 2.33 16 7 C 0.03 0.63 4.97 -17.43 -0.09 0.54 16 8 N -0.81 -17.73 8.87 55.49 0.49 -17.24 16 9 Si 0.93 16.73 29.62 -169.99 -5.03 11.69 16 10 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 11 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 12 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 13 S 2.54 56.89 5.22 -107.50 -0.56 56.33 16 14 O -0.99 -23.92 15.92 -57.17 -0.91 -24.83 16 15 O -0.98 -23.15 14.79 -57.17 -0.85 -24.00 16 16 C -0.71 -14.47 5.81 -41.42 -0.24 -14.71 16 17 C 0.05 0.96 9.50 -40.42 -0.38 0.57 16 18 C -0.30 -5.36 6.45 -36.84 -0.24 -5.60 16 19 C 0.56 9.29 8.30 34.01 0.28 9.57 16 20 O -0.51 -9.66 17.63 -19.37 -0.34 -10.00 16 21 O -0.52 -6.31 13.29 -41.04 -0.55 -6.85 16 22 S 0.22 3.42 22.87 -107.50 -2.46 0.97 16 23 C -0.05 -0.97 6.27 -35.85 -0.22 -1.20 16 24 C -0.13 -2.15 8.59 36.00 0.31 -1.84 16 25 H 0.19 3.33 7.80 -54.09 -0.42 2.91 16 26 H 0.12 2.51 6.38 -51.93 -0.33 2.18 16 27 H 0.08 1.66 6.95 -51.93 -0.36 1.30 16 28 H 0.28 5.79 8.31 -40.82 -0.34 5.45 16 29 H 0.16 3.21 7.76 -52.49 -0.41 2.80 16 30 H 0.41 2.86 9.11 45.56 0.42 3.27 16 31 H 0.11 1.82 7.38 -51.93 -0.38 1.44 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 2.11 4.34 -51.93 -0.23 1.88 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -29.13 317.58 -7.75 -36.89 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -1.57 Total: 10.61 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.58 Total: -20.80 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.31 Total: -34.79 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -2.64 Total: -65.68 kcal Atomic # 14 Polarization: 16.73 SS G_CDS: -5.03 Total: 11.69 kcal Atomic # 16 Polarization: 60.31 SS G_CDS: -3.02 Total: 57.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.13 -7.75 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302330729.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.694 kcal (2) G-P(sol) polarization free energy of solvation -29.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds