Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 O 1.42896 * 109.46869 * 182.10057 * 3 2 1 5 5 N 1.46497 * 109.46939 * 239.99893 * 2 1 3 6 6 S 1.65602 * 120.00134 * 48.72751 * 5 2 1 7 7 O 1.42096 * 106.39888 * 46.13619 * 6 5 2 8 8 O 1.42097 * 106.40218 * 179.05706 * 6 5 2 9 9 C 1.76203 * 107.21792 * 292.59695 * 6 5 2 10 10 C 1.38635 * 119.74800 * 279.87359 * 9 6 5 11 11 C 1.37624 * 120.24482 * 179.72122 * 10 9 6 12 12 C 1.40708 * 119.74519 * 0.56894 * 11 10 9 13 13 C 1.41402 * 120.24632 * 179.68380 * 12 11 10 14 14 H 1.07996 * 120.00100 * 206.59142 * 13 12 11 15 15 C 1.39942 * 119.99788 * 26.58785 * 13 12 11 16 16 N 1.30824 * 120.00141 * 12.62379 * 15 13 12 17 17 Si 1.86800 * 120.00022 * 192.63237 * 15 13 12 18 18 H 1.48498 * 109.47326 * 89.99645 * 17 15 13 19 19 H 1.48496 * 109.46974 * 210.00129 * 17 15 13 20 20 H 1.48507 * 109.46981 * 329.99638 * 17 15 13 21 21 C 1.40720 * 119.51483 * 359.70150 * 12 11 10 22 22 C 1.37623 * 119.74115 * 0.02562 * 21 12 11 23 23 C 1.50708 * 109.46839 * 120.00250 * 2 1 3 24 24 O 1.20823 * 119.99525 * 264.99941 * 23 2 1 25 25 O 1.34225 * 119.99863 * 84.99538 * 23 2 1 26 26 H 1.08999 * 109.47070 * 49.69579 * 1 2 3 27 27 H 1.08998 * 109.47665 * 169.69657 * 1 2 3 28 28 H 1.09001 * 109.46983 * 289.70130 * 1 2 3 29 29 H 1.09005 * 109.46976 * 62.10329 * 3 2 1 30 30 H 1.08999 * 109.47113 * 302.10383 * 3 2 1 31 31 H 0.96706 * 113.99988 * 179.97438 * 4 3 2 32 32 H 0.97003 * 120.00295 * 228.72505 * 5 2 1 33 33 H 1.07994 * 119.87954 * 359.97438 * 10 9 6 34 34 H 1.07998 * 120.12467 * 180.27599 * 11 10 9 35 35 H 0.96998 * 120.00049 * 179.97438 * 16 15 13 36 36 H 1.07993 * 120.13284 * 179.97438 * 21 12 11 37 37 H 1.07999 * 119.87395 * 179.97438 * 22 21 12 38 38 H 0.96702 * 116.99268 * 179.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4682 1.4426 -0.0494 5 7 2.0183 -0.6906 -1.1961 6 16 1.4024 -0.3052 -2.6842 7 8 1.3832 1.1139 -2.7552 8 8 2.0863 -1.1213 -3.6252 9 6 -0.2805 -0.8271 -2.7033 10 6 -0.5846 -2.1606 -2.9300 11 6 -1.8951 -2.5805 -2.9414 12 6 -2.9286 -1.6484 -2.7338 13 6 -4.2792 -2.0671 -2.7499 14 1 -5.0577 -1.3689 -3.0196 15 6 -4.6068 -3.3861 -2.4165 16 7 -3.7134 -4.1605 -1.8565 17 14 -6.3198 -4.0412 -2.7714 18 1 -6.3493 -4.6398 -4.1301 19 1 -6.6719 -5.0763 -1.7666 20 1 -7.3002 -2.9280 -2.6996 21 6 -2.6084 -0.2965 -2.5102 22 6 -1.2905 0.0999 -2.4975 23 6 2.0323 -0.7105 1.2305 24 8 2.3196 -0.0773 2.2186 25 8 2.1604 -2.0466 1.2287 26 1 -0.3633 0.6647 -0.7837 27 1 -0.3634 -1.0110 -0.1838 28 1 -0.3633 0.3464 0.9675 29 1 1.7079 1.9453 0.9083 30 1 1.6463 1.9671 -0.8705 31 1 3.8615 2.3261 -0.0526 32 1 2.7025 -1.3737 -1.1166 33 1 0.2101 -2.8732 -3.0943 34 1 -2.1296 -3.6205 -3.1138 35 1 -3.9407 -5.0746 -1.6250 36 1 -3.3937 0.4273 -2.3501 37 1 -1.0424 1.1369 -2.3266 38 1 2.4868 -2.4574 2.0410 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313560099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = -190.902401 kcal Electronic energy + Delta-G solvation = -27182.811893 eV Core-core repulsion = 23117.332551 eV Total energy + Delta-G solvation = -4065.479342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59590 -37.89332 -37.48803 -36.46517 -36.07888 -35.20511 -35.13331 -34.09483 -30.53774 -30.15883 -29.46445 -26.31903 -25.68008 -24.63164 -21.58500 -21.22943 -20.45693 -18.80790 -18.41334 -17.73280 -17.61431 -17.34953 -16.79858 -16.27443 -15.57415 -15.49057 -15.04498 -14.71235 -14.32090 -14.12179 -13.55925 -13.50354 -13.24899 -12.84130 -12.71946 -12.45006 -12.27476 -12.10657 -11.78469 -11.69518 -11.56900 -11.51084 -11.50256 -11.37104 -11.29317 -11.18108 -10.92343 -10.43445 -10.31679 -9.87862 -9.83908 -9.71262 -9.58580 -9.22090 -7.98076 -7.70850 -7.14527 -4.86311 1.12499 2.13703 2.20702 2.80952 2.86053 2.89305 2.90223 2.90822 3.54786 3.63619 4.02746 4.18878 4.46512 4.81189 4.98339 5.06345 5.24369 5.31411 5.38517 5.52499 5.76219 5.82628 5.96172 6.00147 6.10407 6.36921 6.45751 6.62172 6.65961 6.86566 6.96863 7.16807 7.27894 7.34500 7.57872 7.65032 7.72249 7.87143 7.91538 8.27980 8.46743 8.58875 9.75250 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.017686 B = 0.004093 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.770724 B = 6839.218562 C = 7459.300837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.212 3.788 3 C 0.056 3.944 4 O -0.565 6.565 5 N -1.106 6.106 6 S 2.696 3.304 7 O -0.983 6.983 8 O -0.979 6.979 9 C -0.788 4.788 10 C -0.011 4.011 11 C -0.180 4.180 12 C 0.140 3.860 13 C -0.434 4.434 14 H 0.087 0.913 15 C 0.070 3.930 16 N -0.770 5.770 17 Si 0.919 3.081 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.234 4.234 22 C -0.003 4.003 23 C 0.497 3.503 24 O -0.508 6.508 25 O -0.505 6.505 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.381 0.619 32 H 0.419 0.581 33 H 0.101 0.899 34 H 0.126 0.874 35 H 0.288 0.712 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 3.662 5.331 8.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.121 3.879 3 C -0.023 4.023 4 O -0.371 6.371 5 N -0.862 5.862 6 S 2.795 3.205 7 O -0.974 6.974 8 O -0.969 6.969 9 C -0.884 4.884 10 C -0.032 4.032 11 C -0.200 4.200 12 C 0.136 3.864 13 C -0.461 4.461 14 H 0.105 0.895 15 C -0.151 4.151 16 N -0.393 5.393 17 Si 0.742 3.258 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 C -0.255 4.255 22 C -0.023 4.023 23 C 0.337 3.663 24 O -0.394 6.394 25 O -0.316 6.316 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.228 0.772 32 H 0.253 0.747 33 H 0.119 0.881 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.847 3.683 4.686 8.349 hybrid contribution -0.788 -0.778 0.944 1.455 sum 5.059 2.905 5.630 8.107 Atomic orbital electron populations 1.22970 0.89397 1.07310 1.05395 1.19987 0.95948 0.90504 0.81483 1.22976 0.82347 0.93814 1.03193 1.86408 1.19067 1.33793 1.97784 1.55687 1.54813 1.53569 1.22161 1.01232 0.74671 0.73225 0.71398 1.93422 1.88098 1.30139 1.85706 1.93512 1.74686 1.70230 1.58499 1.29152 1.19211 1.03149 1.36930 1.20211 0.96902 0.92193 0.93867 1.21395 0.91246 1.00479 1.06882 1.17867 0.93398 0.91134 0.83987 1.19965 0.93615 0.95505 1.37062 0.89487 1.26119 1.00245 0.96519 0.92230 1.69786 1.35560 1.08162 1.25766 0.86111 0.80851 0.79358 0.79431 1.18842 1.19877 1.18240 1.21076 0.94649 0.96666 1.13082 1.20136 0.92859 0.96041 0.93256 1.23160 0.73378 0.80545 0.89217 1.90697 1.46039 1.67383 1.35316 1.84571 1.78972 1.22519 1.45501 0.88079 0.88009 0.90186 0.91742 0.88374 0.77199 0.74738 0.88128 0.85679 0.90024 0.88108 0.87258 0.73255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 6.66 37.16 0.25 -2.62 16 2 C 0.21 3.14 0.86 -132.97 -0.11 3.03 16 3 C 0.06 0.78 5.33 37.16 0.20 0.97 16 4 O -0.57 -7.65 13.10 -35.23 -0.46 -8.11 16 5 N -1.11 -17.31 5.23 -0.40 0.00 -17.31 16 6 S 2.70 49.89 5.33 -107.50 -0.57 49.32 16 7 O -0.98 -18.76 14.12 -57.17 -0.81 -19.57 16 8 O -0.98 -20.74 17.55 -57.17 -1.00 -21.75 16 9 C -0.79 -15.98 4.06 -39.29 -0.16 -16.14 16 10 C -0.01 -0.25 9.50 -39.66 -0.38 -0.63 16 11 C -0.18 -4.25 8.68 -38.87 -0.34 -4.59 16 12 C 0.14 3.33 5.57 -106.82 -0.59 2.73 16 13 C -0.43 -10.15 9.07 -37.74 -0.34 -10.49 16 14 H 0.09 1.93 7.88 -52.49 -0.41 1.52 16 15 C 0.07 1.56 5.23 -17.34 -0.09 1.46 16 16 N -0.77 -17.58 10.80 55.55 0.60 -16.98 16 17 Si 0.92 16.53 29.58 -169.99 -5.03 11.51 16 18 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 19 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 21 C -0.23 -5.06 9.80 -38.87 -0.38 -5.44 16 22 C 0.00 -0.06 6.76 -39.66 -0.27 -0.33 16 23 C 0.50 7.19 6.77 36.01 0.24 7.43 16 24 O -0.51 -8.14 16.75 -19.39 -0.32 -8.46 16 25 O -0.50 -6.09 12.78 -39.25 -0.50 -6.59 16 26 H 0.10 1.53 3.93 -51.93 -0.20 1.33 16 27 H 0.10 1.69 7.30 -51.93 -0.38 1.31 16 28 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 29 H 0.06 0.80 7.80 -51.93 -0.40 0.39 16 30 H 0.10 1.40 5.78 -51.93 -0.30 1.10 16 31 H 0.38 3.39 9.12 45.56 0.42 3.80 16 32 H 0.42 6.00 8.24 -34.47 -0.28 5.72 16 33 H 0.10 2.05 7.84 -52.49 -0.41 1.64 16 34 H 0.13 3.04 6.12 -52.49 -0.32 2.72 16 35 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 36 H 0.10 2.01 8.06 -52.49 -0.42 1.58 16 37 H 0.11 1.93 6.48 -52.49 -0.34 1.59 16 38 H 0.41 2.97 9.10 45.56 0.41 3.39 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -30.94 328.86 -7.33 -38.27 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -2.21 Total: 19.32 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.98 Total: -24.60 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.60 Total: -34.29 kcal Atomic # 8 Polarization: -61.38 SS G_CDS: -3.10 Total: -64.48 kcal Atomic # 14 Polarization: 16.53 SS G_CDS: -5.03 Total: 11.51 kcal Atomic # 16 Polarization: 49.89 SS G_CDS: -0.57 Total: 49.32 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.94 -7.33 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313560099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.631 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds