Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46741 * 2 1 4 4 O 1.42906 * 109.46960 * 174.65014 * 3 2 1 5 5 N 1.46499 * 109.47053 * 120.00110 * 2 1 3 6 6 S 1.65597 * 119.99809 * 305.24554 * 5 2 1 7 7 O 1.42100 * 106.39949 * 183.00007 * 6 5 2 8 8 O 1.42098 * 106.40391 * 315.91692 * 6 5 2 9 9 C 1.76197 * 107.22038 * 69.46159 * 6 5 2 10 10 C 1.38639 * 119.75025 * 256.22927 * 9 6 5 11 11 C 1.37614 * 120.25242 * 179.71856 * 10 9 6 12 12 C 1.40717 * 119.74188 * 0.56994 * 11 10 9 13 13 C 1.41393 * 120.24398 * 179.68177 * 12 11 10 14 14 H 1.07998 * 120.00326 * 28.13955 * 13 12 11 15 15 C 1.39950 * 119.99978 * 208.13597 * 13 12 11 16 16 N 1.30822 * 119.99757 * 12.35193 * 15 13 12 17 17 Si 1.86795 * 120.00178 * 192.34885 * 15 13 12 18 18 H 1.48503 * 109.47091 * 60.00323 * 17 15 13 19 19 H 1.48499 * 109.47416 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46922 * 300.00295 * 17 15 13 21 21 C 1.40722 * 119.51132 * 359.70311 * 12 11 10 22 22 C 1.37624 * 119.74365 * 0.02562 * 21 12 11 23 23 C 1.50699 * 109.46904 * 240.00216 * 2 1 3 24 24 O 1.20820 * 120.00300 * 24.99922 * 23 2 1 25 25 O 1.34234 * 119.99529 * 204.99849 * 23 2 1 26 26 H 1.09000 * 109.47162 * 199.07484 * 1 2 3 27 27 H 1.08997 * 109.46877 * 319.08069 * 1 2 3 28 28 H 1.09005 * 109.46964 * 79.07646 * 1 2 3 29 29 H 1.08994 * 109.47383 * 294.64599 * 3 2 1 30 30 H 1.08998 * 109.47395 * 54.64969 * 3 2 1 31 31 H 0.96699 * 114.00227 * 179.97438 * 4 3 2 32 32 H 0.97000 * 120.00038 * 125.24757 * 5 2 1 33 33 H 1.08004 * 119.86816 * 359.97438 * 10 9 6 34 34 H 1.08000 * 120.13452 * 180.27512 * 11 10 9 35 35 H 0.97002 * 120.00363 * 179.97438 * 16 15 13 36 36 H 1.07995 * 120.12601 * 179.97438 * 21 12 11 37 37 H 1.07993 * 119.86975 * 179.97438 * 22 21 12 38 38 H 0.96701 * 116.99353 * 180.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4635 1.4445 0.1256 5 7 2.0184 -0.6906 1.1962 6 16 1.5140 -0.2046 2.6967 7 8 2.2101 -1.0131 3.6353 8 8 1.5730 1.2152 2.6995 9 6 -0.1894 -0.6321 2.8384 10 6 -1.1580 0.3527 2.7206 11 6 -2.4916 0.0294 2.8237 12 6 -2.8701 -1.3048 3.0616 13 6 -4.2370 -1.6478 3.1761 14 1 -4.9855 -1.0625 2.6627 15 6 -4.6201 -2.7457 3.9548 16 7 -3.7586 -3.3059 4.7644 17 14 -6.3616 -3.4113 3.8382 18 1 -6.6324 -3.8478 2.4449 19 1 -6.5122 -4.5676 4.7577 20 1 -7.3247 -2.3473 4.2197 21 6 -1.8781 -2.2953 3.1851 22 6 -0.5507 -1.9498 3.0728 23 6 2.0323 -0.7104 -1.2305 24 8 1.3396 -0.7702 -2.2186 25 8 3.2494 -1.2766 -1.2287 26 1 -0.3633 -0.9712 0.3358 27 1 -0.3633 0.7765 0.6731 28 1 -0.3633 0.1948 -1.0091 29 1 1.7570 1.9279 -0.9340 30 1 1.6005 1.9833 0.8382 31 1 3.8565 2.3280 0.1324 32 1 2.6371 -1.4326 1.1092 33 1 -0.8648 1.3770 2.5431 34 1 -3.2448 0.7975 2.7272 35 1 -4.0242 -4.0667 5.3044 36 1 -2.1574 -3.3223 3.3681 37 1 0.2123 -2.7082 3.1677 38 1 3.5281 -1.7206 -2.0413 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313560100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -192.958639 kcal Electronic energy + Delta-G solvation = -27074.230971 eV Core-core repulsion = 23008.662464 eV Total energy + Delta-G solvation = -4065.568507 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.086 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.66083 -37.84475 -37.52868 -36.41853 -36.24618 -35.18856 -35.10351 -34.05249 -30.42451 -30.13926 -29.46797 -26.38680 -25.71064 -24.63156 -21.55151 -21.21852 -20.46806 -18.83374 -18.43280 -17.78148 -17.63569 -17.28743 -16.88573 -16.24071 -15.85470 -15.50780 -14.95433 -14.56225 -14.38645 -14.14340 -13.49259 -13.42278 -13.22171 -13.00706 -12.66952 -12.35007 -12.23786 -12.15923 -11.80181 -11.75021 -11.61171 -11.53147 -11.46912 -11.35386 -11.31461 -11.12756 -10.83299 -10.59378 -10.42934 -9.86130 -9.79768 -9.73668 -9.53978 -9.23779 -7.95276 -7.72398 -7.11547 -4.83844 1.12919 2.06623 2.19736 2.79870 2.87223 2.88282 2.89769 2.92292 3.55754 3.66093 3.98564 4.22674 4.47376 4.74276 4.93885 5.07365 5.20469 5.21132 5.34915 5.55971 5.78685 5.84950 5.99933 6.01778 6.10527 6.30794 6.45964 6.62995 6.68940 6.87093 6.98729 7.16506 7.30062 7.36212 7.57695 7.58597 7.73260 7.81933 7.93782 8.29166 8.48484 8.60257 9.79359 Molecular weight = 329.09amu Principal moments of inertia in cm(-1) A = 0.019172 B = 0.003863 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.111451 B = 7247.082110 C = 7770.746727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.211 3.789 3 C 0.047 3.953 4 O -0.559 6.559 5 N -1.107 6.107 6 S 2.698 3.302 7 O -0.978 6.978 8 O -0.981 6.981 9 C -0.787 4.787 10 C -0.002 4.002 11 C -0.233 4.233 12 C 0.141 3.859 13 C -0.437 4.437 14 H 0.087 0.913 15 C 0.071 3.929 16 N -0.771 5.771 17 Si 0.919 3.081 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.262 1.262 21 C -0.178 4.178 22 C -0.015 4.015 23 C 0.497 3.503 24 O -0.510 6.510 25 O -0.499 6.499 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.380 0.620 32 H 0.419 0.581 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.289 0.711 36 H 0.123 0.877 37 H 0.099 0.901 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 3.787 -8.921 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.120 3.880 3 C -0.033 4.033 4 O -0.364 6.364 5 N -0.863 5.863 6 S 2.796 3.204 7 O -0.968 6.968 8 O -0.972 6.972 9 C -0.883 4.883 10 C -0.022 4.022 11 C -0.254 4.254 12 C 0.138 3.862 13 C -0.465 4.465 14 H 0.105 0.895 15 C -0.151 4.151 16 N -0.394 5.394 17 Si 0.743 3.257 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.198 4.198 22 C -0.035 4.035 23 C 0.337 3.663 24 O -0.397 6.397 25 O -0.310 6.310 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.227 0.773 32 H 0.254 0.746 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.338 3.690 -8.003 11.467 hybrid contribution -0.896 -0.736 -0.760 1.386 sum 6.442 2.955 -8.762 11.270 Atomic orbital electron populations 1.22745 0.89237 1.06555 1.05543 1.20007 0.95425 0.91069 0.81496 1.23101 0.83125 0.93991 1.03064 1.86492 1.18999 1.33590 1.97274 1.55712 1.61199 1.48027 1.21407 1.01183 0.74769 0.73114 0.71297 1.93519 1.74133 1.70574 1.58610 1.93399 1.87911 1.29987 1.85890 1.29165 1.20143 1.02490 1.36546 1.20155 0.92939 0.95897 0.93208 1.21057 0.94454 0.95968 1.13885 1.17858 0.93386 0.90659 0.84322 1.19905 0.93234 1.09426 1.23893 0.89524 1.26118 1.00558 0.95188 0.93242 1.69786 1.36510 1.17651 1.15436 0.86165 0.80909 0.79035 0.79638 1.18437 1.19929 1.18597 1.21362 0.91325 0.99889 1.07226 1.20191 0.96558 0.92663 0.94092 1.23149 0.78658 0.75203 0.89261 1.90723 1.57182 1.56485 1.35343 1.84567 1.34412 1.66746 1.45232 0.88677 0.89001 0.89177 0.92534 0.87591 0.77295 0.74623 0.87374 0.88095 0.89935 0.85931 0.88295 0.73443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 6.86 37.16 0.25 -2.41 16 2 C 0.21 2.99 0.87 -132.97 -0.12 2.88 16 3 C 0.05 0.60 5.42 37.16 0.20 0.80 16 4 O -0.56 -6.91 13.17 -35.23 -0.46 -7.37 16 5 N -1.11 -16.83 5.23 -0.40 0.00 -16.84 16 6 S 2.70 49.96 5.48 -107.50 -0.59 49.37 16 7 O -0.98 -21.03 17.67 -57.17 -1.01 -22.04 16 8 O -0.98 -18.60 13.83 -57.17 -0.79 -19.39 16 9 C -0.79 -16.13 3.88 -39.29 -0.15 -16.28 16 10 C 0.00 -0.04 7.11 -39.66 -0.28 -0.32 16 11 C -0.23 -5.13 9.80 -38.87 -0.38 -5.51 16 12 C 0.14 3.42 5.55 -106.82 -0.59 2.82 16 13 C -0.44 -10.38 9.06 -37.74 -0.34 -10.72 16 14 H 0.09 1.93 7.88 -52.49 -0.41 1.52 16 15 C 0.07 1.60 5.23 -17.34 -0.09 1.51 16 16 N -0.77 -18.24 10.88 55.55 0.60 -17.64 16 17 Si 0.92 16.82 29.58 -169.99 -5.03 11.80 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 21 C -0.18 -4.26 8.67 -38.87 -0.34 -4.59 16 22 C -0.01 -0.32 9.51 -39.66 -0.38 -0.70 16 23 C 0.50 6.74 6.91 36.01 0.25 6.99 16 24 O -0.51 -7.82 16.46 -18.74 -0.31 -8.13 16 25 O -0.50 -5.47 12.59 -39.27 -0.49 -5.96 16 26 H 0.09 1.52 7.21 -51.93 -0.37 1.15 16 27 H 0.09 1.33 5.09 -51.93 -0.26 1.07 16 28 H 0.09 1.21 7.14 -51.93 -0.37 0.84 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 1.45 5.55 -51.93 -0.29 1.17 16 31 H 0.38 3.00 9.12 45.56 0.42 3.41 16 32 H 0.42 5.81 7.99 -34.47 -0.28 5.54 16 33 H 0.11 1.95 6.93 -52.48 -0.36 1.59 16 34 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 36 H 0.12 3.01 6.23 -52.49 -0.33 2.69 16 37 H 0.10 2.01 7.94 -52.49 -0.42 1.59 16 38 H 0.41 2.52 9.10 45.56 0.41 2.94 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -31.49 329.75 -7.32 -38.81 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -2.24 Total: 17.97 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -1.97 Total: -25.55 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.60 Total: -34.47 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -3.07 Total: -62.89 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.80 kcal Atomic # 16 Polarization: 49.96 SS G_CDS: -0.59 Total: 49.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.49 -7.32 -38.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313560100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.151 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds